Wall clock time and date at job start Tue Mar 31 2020 23:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36616 * 120.92062 * 2 1 4 4 C 1.39268 * 119.90251 * 180.02562 * 3 2 1 5 5 N 1.31144 * 121.77493 * 359.97438 * 4 3 2 6 6 C 1.33626 * 121.39023 * 0.02562 * 5 4 3 7 7 C 1.40765 * 120.83312 * 179.97438 * 6 5 4 8 8 C 1.35698 * 120.11147 * 179.76388 * 7 6 5 9 9 C 1.40637 * 120.92601 * 0.51454 * 8 7 6 10 10 C 1.47762 * 119.80304 * 179.72935 * 9 8 7 11 11 O 1.21568 * 119.99741 * 179.73252 * 10 9 8 12 12 N 1.34771 * 119.99870 * 359.73469 * 10 9 8 13 13 C 1.46509 * 119.99581 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46802 * 179.97438 * 13 12 10 15 15 H 1.09003 * 112.84746 * 43.80477 * 14 13 12 16 16 C 1.53781 * 113.61341 * 174.99846 * 14 13 12 17 17 C 1.53781 * 87.08070 * 140.06609 * 16 14 13 18 18 H 1.09002 * 113.61445 * 89.11830 * 17 16 14 19 19 N 1.46497 * 113.61305 * 219.93536 * 17 16 14 20 20 C 1.36944 * 119.99791 * 203.46713 * 19 17 16 21 21 H 1.07993 * 120.00042 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99770 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99962 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47017 * 89.99868 * 24 22 20 26 26 H 1.48492 * 109.47131 * 210.00443 * 24 22 20 27 27 H 1.48501 * 109.46802 * 330.00196 * 24 22 20 28 28 C 1.53786 * 87.17350 * 334.52830 * 17 16 14 29 29 C 1.38555 * 120.39096 * 359.46006 * 9 8 7 30 30 C 1.40182 * 119.40245 * 0.27350 * 29 9 8 31 31 H 1.08998 * 109.47842 * 269.98053 * 1 2 3 32 32 H 1.09006 * 109.46994 * 29.98565 * 1 2 3 33 33 H 1.09001 * 109.47402 * 149.97917 * 1 2 3 34 34 H 1.07991 * 120.04610 * 359.97438 * 3 2 1 35 35 H 1.08006 * 119.11422 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.94572 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.54003 * 180.27838 * 8 7 6 38 38 H 0.96997 * 120.00572 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47110 * 59.99931 * 13 12 10 40 40 H 1.08998 * 109.47069 * 299.99860 * 13 12 10 41 41 H 1.08999 * 113.61181 * 25.51665 * 16 14 13 42 42 H 1.09000 * 113.69133 * 254.62492 * 16 14 13 43 43 H 0.96995 * 120.00146 * 23.47603 * 19 17 16 44 44 H 0.96996 * 120.00281 * 179.97438 * 23 22 20 45 45 H 1.08992 * 113.61675 * 140.02412 * 28 17 16 46 46 H 1.09000 * 113.60973 * 270.92699 * 28 17 16 47 47 H 1.08000 * 120.29533 * 180.28697 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0006 6 6 3.6478 -1.1612 -0.0006 7 6 4.3794 -2.3638 -0.0011 8 6 3.7304 -3.5555 0.0037 9 6 2.3252 -3.6132 -0.0015 10 6 1.6441 -4.9245 -0.0021 11 8 0.4296 -4.9785 -0.0017 12 7 2.3692 -6.0605 -0.0031 13 6 1.6938 -7.3606 -0.0031 14 6 2.7388 -8.4781 -0.0049 15 1 3.5581 -8.2925 0.6896 16 6 2.1344 -9.8868 0.1177 17 6 3.1815 -10.3404 -0.9132 18 1 4.1219 -10.6640 -0.4670 19 7 2.6616 -11.2925 -1.8977 20 6 3.5182 -12.1370 -2.5521 21 1 4.5769 -12.1014 -2.3421 22 6 3.0255 -13.0396 -3.4846 23 7 1.7351 -13.0834 -3.7402 24 14 4.1940 -14.1922 -4.3768 25 1 4.3356 -15.4508 -3.6017 26 1 3.6529 -14.4992 -5.7251 27 1 5.5224 -13.5424 -4.5127 28 6 3.2056 -8.8869 -1.4149 29 6 1.5758 -2.4478 -0.0005 30 6 2.2307 -1.2084 0.0000 31 1 -0.3635 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6849 2.1162 -0.0004 35 1 4.1437 2.0814 -0.0010 36 1 5.4591 -2.3380 -0.0011 37 1 4.3009 -4.4725 0.0078 38 1 3.3382 -6.0174 -0.0038 39 1 1.0696 -7.4458 -0.8927 40 1 1.0710 -7.4465 0.8873 41 1 1.1082 -9.9546 -0.2434 42 1 2.2673 -10.3363 1.1018 43 1 1.7106 -11.3247 -2.0861 44 1 1.3909 -13.7138 -4.3920 45 1 4.2036 -8.5285 -1.6670 46 1 2.4718 -8.6818 -2.1943 47 1 0.4968 -2.4940 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086095910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:52 Heat of formation + Delta-G solvation = 21.425001 kcal Electronic energy + Delta-G solvation = -27289.281811 eV Core-core repulsion = 23436.443098 eV Total energy + Delta-G solvation = -3852.838714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06889 -40.90272 -39.81037 -37.76747 -36.15373 -35.68334 -35.04662 -32.38856 -31.75180 -31.42861 -29.13790 -28.46833 -26.44894 -26.06805 -25.20368 -24.62955 -22.55896 -22.20144 -21.98097 -20.59295 -19.44629 -18.96987 -18.84982 -17.75543 -17.22390 -16.80451 -16.58544 -16.51941 -16.04315 -15.59852 -15.56622 -15.36245 -15.09442 -15.07882 -14.78058 -14.54589 -14.42710 -13.99340 -13.79734 -13.46858 -13.42906 -13.22416 -13.03852 -12.92503 -12.74764 -12.70693 -12.62254 -12.40099 -12.19071 -12.07213 -11.62769 -11.54879 -11.21789 -11.17585 -10.97634 -10.80032 -10.53219 -10.20559 -9.84453 -9.28707 -8.96627 -7.93939 -5.22128 -0.85395 -0.37510 0.81526 1.36060 1.47577 1.49219 1.57524 2.05670 2.24993 2.57216 3.03385 3.25423 3.37904 3.46066 3.55932 3.62828 3.73839 3.74622 3.78812 3.93105 3.96285 4.01015 4.23467 4.26937 4.36437 4.43296 4.44573 4.49294 4.56781 4.68961 4.73167 4.75048 4.85453 4.90419 4.98370 4.99982 5.01491 5.06130 5.11900 5.15358 5.22773 5.30546 5.34135 5.41942 5.49721 5.53560 5.73914 5.74480 6.28463 6.46435 6.86957 7.11245 7.33911 8.12821 8.34117 9.29549 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.001725 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.310807 B =16228.225641 C =16681.230072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.022 4.022 3 C -0.181 4.181 4 C 0.144 3.856 5 N -0.512 5.512 6 C 0.128 3.872 7 C -0.104 4.104 8 C -0.070 4.070 9 C -0.148 4.148 10 C 0.554 3.446 11 O -0.581 6.581 12 N -0.705 5.705 13 C 0.137 3.863 14 C -0.095 4.095 15 H 0.124 0.876 16 C -0.135 4.135 17 C 0.142 3.858 18 H 0.081 0.919 19 N -0.730 5.730 20 C -0.241 4.241 21 H 0.080 0.920 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.973 3.027 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.268 1.268 28 C -0.154 4.154 29 C -0.031 4.031 30 C -0.131 4.131 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.174 0.826 35 H 0.193 0.807 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.415 0.585 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 32.588 12.385 35.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.030 4.030 3 C -0.200 4.200 4 C -0.027 4.027 5 N -0.221 5.221 6 C 0.006 3.994 7 C -0.122 4.122 8 C -0.090 4.090 9 C -0.151 4.151 10 C 0.343 3.657 11 O -0.463 6.463 12 N -0.357 5.357 13 C 0.014 3.986 14 C -0.114 4.114 15 H 0.142 0.858 16 C -0.175 4.175 17 C 0.033 3.967 18 H 0.099 0.901 19 N -0.368 5.368 20 C -0.373 4.373 21 H 0.098 0.902 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.802 3.198 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.192 1.192 28 C -0.195 4.195 29 C -0.051 4.051 30 C -0.133 4.133 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.191 0.809 35 H 0.210 0.790 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.253 0.747 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.639 32.288 12.326 34.752 hybrid contribution -0.638 -1.052 -0.927 1.540 sum 3.002 31.237 11.399 33.387 Atomic orbital electron populations 1.21014 0.88217 1.04655 1.04237 1.20620 0.98072 0.91794 0.92504 1.22171 0.95415 0.99759 1.02645 1.23680 0.92416 0.96913 0.89714 1.68134 1.40650 0.98284 1.15071 1.19321 0.89997 0.93420 0.96631 1.20914 1.01428 0.89531 1.00362 1.21149 0.92079 0.99565 0.96179 1.19905 0.94750 0.92555 1.07903 1.18499 0.86545 0.84856 0.75816 1.90760 1.15247 1.88144 1.52110 1.45812 1.11126 1.05022 1.73745 1.21297 0.94981 0.80879 1.01469 1.22530 0.98315 0.92442 0.98148 0.85804 1.23303 0.99030 0.95195 0.99959 1.21974 0.96643 0.88211 0.89907 0.90100 1.42638 1.06700 1.41403 1.46046 1.19740 0.91245 1.11064 1.15279 0.90248 1.25600 0.97448 1.02351 1.01860 1.69826 1.13102 1.40798 1.38577 0.85139 0.78382 0.79000 0.77255 1.21420 1.22549 1.19248 1.23781 1.00798 0.99037 0.95861 1.21560 1.00787 0.90192 0.92581 1.18850 0.94350 0.94521 1.05606 0.88958 0.88244 0.91252 0.80866 0.79000 0.82587 0.82179 0.74651 0.93268 0.91229 0.91482 0.90170 0.79681 0.94162 0.91257 0.92694 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.59 71.24 0.68 -0.45 16 2 C -0.02 -0.30 5.92 -19.60 -0.12 -0.42 16 3 C -0.18 -1.76 9.72 22.14 0.22 -1.55 16 4 C 0.14 1.71 11.14 85.04 0.95 2.66 16 5 N -0.51 -9.53 10.33 -188.46 -1.95 -11.47 16 6 C 0.13 2.54 6.61 40.37 0.27 2.80 16 7 C -0.10 -1.76 9.95 22.30 0.22 -1.54 16 8 C -0.07 -1.11 9.44 22.27 0.21 -0.90 16 9 C -0.15 -3.10 5.87 -20.10 -0.12 -3.22 16 10 C 0.55 14.06 7.77 86.76 0.67 14.73 16 11 O -0.58 -19.32 16.31 -3.93 -0.06 -19.39 16 12 N -0.71 -14.72 5.50 -466.03 -2.57 -17.29 16 13 C 0.14 3.36 5.52 86.38 0.48 3.83 16 14 C -0.10 -2.23 3.76 -10.18 -0.04 -2.27 16 15 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 16 C -0.14 -4.03 7.39 31.12 0.23 -3.80 16 17 C 0.14 5.26 4.47 45.52 0.20 5.47 16 18 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 19 N -0.73 -36.61 5.41 -320.44 -1.73 -38.34 16 20 C -0.24 -13.32 9.97 84.03 0.84 -12.48 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 23 N -0.97 -60.24 13.06 21.65 0.28 -59.95 16 24 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 C -0.15 -4.78 7.45 31.21 0.23 -4.55 16 29 C -0.03 -0.65 8.88 22.82 0.20 -0.45 16 30 C -0.13 -2.49 5.74 -21.29 -0.12 -2.62 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.47 8.10 -2.38 -0.02 0.45 16 33 H 0.07 0.78 6.52 -2.39 -0.02 0.76 16 34 H 0.17 0.42 8.06 -2.92 -0.02 0.40 16 35 H 0.19 0.85 8.06 -2.91 -0.02 0.82 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.16 1.53 6.35 -2.91 -0.02 1.51 16 38 H 0.42 5.98 6.46 -92.71 -0.60 5.38 16 39 H 0.05 1.46 7.85 -2.39 -0.02 1.44 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.37 20.30 7.91 -92.71 -0.73 19.57 16 44 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.05 1.99 7.91 -2.39 -0.02 1.97 16 47 H 0.14 2.94 6.00 -2.91 -0.02 2.92 16 Total: -1.00 -76.64 390.45 1.15 -75.49 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.32 Total: 31.65 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 5.47 Total: -8.94 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -5.96 Total: -127.06 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.06 Total: -19.39 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.64 1.15 -75.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086095910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.914 kcal (2) G-P(sol) polarization free energy of solvation -76.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds