Wall clock time and date at job start Tue Mar 31 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36353 * 119.96029 * 2 1 4 4 C 1.38862 * 121.06243 * 179.97438 * 3 2 1 5 5 C 1.38743 * 120.72342 * 0.02922 * 4 3 2 6 6 C 1.47442 * 120.33033 * 180.02562 * 5 4 3 7 7 O 1.21601 * 119.99506 * 179.97438 * 6 5 4 8 8 N 1.34769 * 120.00203 * 359.97438 * 6 5 4 9 9 C 1.46499 * 120.00181 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47562 * 180.02562 * 9 8 6 11 11 H 1.09004 * 112.90892 * 43.74568 * 10 9 8 12 12 C 1.53775 * 113.61856 * 174.99773 * 10 9 8 13 13 C 1.53788 * 87.08103 * 139.97902 * 12 10 9 14 14 H 1.08999 * 113.61116 * 89.20464 * 13 12 10 15 15 N 1.46499 * 113.61344 * 220.02116 * 13 12 10 16 16 C 1.36932 * 119.99549 * 205.00205 * 15 13 12 17 17 H 1.08003 * 120.00354 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00011 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00154 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99635 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99668 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99848 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99841 * 20 18 16 24 24 C 1.53781 * 87.08007 * 334.56773 * 13 12 10 25 25 C 1.41775 * 119.33395 * 0.26894 * 5 4 3 26 26 N 1.33351 * 121.04300 * 180.32481 * 25 5 4 27 27 C 1.31228 * 121.35181 * 179.72306 * 26 25 5 28 28 C 1.39234 * 121.69606 * 359.65693 * 27 26 25 29 29 C 1.36631 * 119.90872 * 0.02562 * 28 27 26 30 30 C 1.40434 * 119.95754 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46780 * 89.99883 * 1 2 3 32 32 H 1.08997 * 109.47234 * 209.99678 * 1 2 3 33 33 H 1.08998 * 109.46959 * 330.00181 * 1 2 3 34 34 H 1.08001 * 119.46830 * 359.97438 * 3 2 1 35 35 H 1.08007 * 119.63811 * 180.02562 * 4 3 2 36 36 H 0.97000 * 120.00140 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.47094 * 59.99936 * 9 8 6 38 38 H 1.09006 * 109.46960 * 300.00187 * 9 8 6 39 39 H 1.09004 * 113.61073 * 25.43775 * 12 10 9 40 40 H 1.08992 * 113.69287 * 254.54164 * 12 10 9 41 41 H 0.96993 * 120.00302 * 25.00170 * 15 13 12 42 42 H 0.96998 * 119.99442 * 179.97438 * 19 18 16 43 43 H 1.09001 * 113.61109 * 139.97914 * 24 13 12 44 44 H 1.08996 * 113.61745 * 270.87939 * 24 13 12 45 45 H 1.08003 * 119.15021 * 179.68053 * 27 26 25 46 46 H 1.07995 * 120.04442 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.92075 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1813 0.0000 4 6 3.5763 1.2080 0.0005 5 6 4.3080 0.0292 0.0005 6 6 5.7819 0.0677 0.0016 7 8 6.4171 -0.9693 0.0020 8 7 6.4251 1.2520 0.0022 9 6 7.8896 1.2902 0.0028 10 6 8.3619 2.7454 0.0040 11 1 7.8027 3.3724 0.6985 12 6 9.8871 2.8981 0.1275 13 6 9.7778 4.0344 -0.9029 14 1 9.6072 5.0139 -0.4563 15 7 10.8621 4.0394 -1.8881 16 6 11.2082 5.2043 -2.5192 17 1 10.6822 6.1194 -2.2904 18 6 12.2360 5.2093 -3.4523 19 7 12.5690 6.3291 -4.0586 20 14 13.1462 3.6267 -3.8476 21 1 14.3094 3.4836 -2.9355 22 1 13.6219 3.6672 -5.2538 23 1 12.2311 2.4711 -3.6677 24 6 8.4941 3.3513 -1.4033 25 6 3.6241 -1.2127 -0.0059 26 7 4.2932 -2.3662 0.0003 27 6 3.6663 -3.5191 -0.0002 28 6 2.2761 -3.5959 -0.0001 29 6 1.5305 -2.4510 0.0000 30 6 2.2083 -1.2167 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6387 2.1112 -0.0004 35 1 4.0923 2.1569 0.0009 36 1 5.9184 2.0791 0.0022 37 1 8.2665 0.7862 -0.8872 38 1 8.2659 0.7857 0.8928 39 1 10.4431 2.0330 -0.2339 40 1 10.2156 3.2313 1.1119 41 1 11.3347 3.2177 -2.0934 42 1 13.2874 6.3325 -4.7103 43 1 7.6967 4.0508 -1.6542 44 1 8.6693 2.6102 -2.1830 45 1 4.2437 -4.4318 -0.0003 46 1 1.7878 -4.5592 -0.0001 47 1 0.4513 -2.4915 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086151010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:10 Heat of formation + Delta-G solvation = 57.442352 kcal Electronic energy + Delta-G solvation = -27719.453063 eV Core-core repulsion = 23868.176179 eV Total energy + Delta-G solvation = -3851.276884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40737 -39.58952 -38.46942 -37.58210 -34.69603 -34.45632 -33.29952 -31.60171 -30.97031 -30.69749 -28.55324 -26.87684 -25.18001 -24.69243 -24.03057 -23.62333 -22.38356 -20.96057 -20.29187 -19.32191 -18.56109 -17.95837 -17.45409 -17.39017 -16.02599 -15.92181 -15.46621 -15.11219 -14.85637 -14.73754 -14.51453 -14.33639 -14.25203 -13.92876 -13.71667 -13.60787 -13.23686 -13.13583 -12.68624 -12.65006 -12.32516 -12.18838 -11.95496 -11.79640 -11.69881 -11.57189 -11.53270 -10.88099 -10.75361 -10.46806 -10.33584 -10.14192 -10.02511 -9.79681 -9.54974 -9.34986 -9.20819 -9.00480 -8.88371 -8.52070 -7.25847 -5.77780 -3.13016 -0.23589 0.43126 1.39130 2.35672 3.08202 3.11652 3.39047 3.42545 3.46695 3.83677 3.92473 4.08013 4.22987 4.36650 4.39620 4.55670 4.59300 4.62028 4.83059 4.86895 4.89743 4.94037 5.03587 5.05607 5.14289 5.23917 5.36709 5.41312 5.44821 5.50020 5.55177 5.62456 5.69124 5.75149 5.77024 5.83261 5.90063 5.96119 6.08622 6.19979 6.22700 6.26247 6.38874 6.44885 6.52797 6.71191 7.00268 7.49037 7.71327 7.98749 8.28476 8.42168 9.20172 9.93072 10.13025 11.40430 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019685 B = 0.001987 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.065838 B =14088.669780 C =14709.524372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.039 4.039 3 C -0.130 4.130 4 C -0.057 4.057 5 C -0.113 4.113 6 C 0.550 3.450 7 O -0.501 6.501 8 N -0.726 5.726 9 C 0.135 3.865 10 C -0.127 4.127 11 H 0.091 0.909 12 C -0.145 4.145 13 C 0.172 3.828 14 H 0.084 0.916 15 N -0.737 5.737 16 C -0.247 4.247 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.276 1.276 24 C -0.161 4.161 25 C 0.165 3.835 26 N -0.438 5.438 27 C 0.132 3.868 28 C -0.176 4.176 29 C -0.060 4.060 30 C -0.109 4.109 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.160 0.840 46 H 0.138 0.862 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.235 -16.504 12.051 35.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.040 4.040 3 C -0.148 4.148 4 C -0.077 4.077 5 C -0.117 4.117 6 C 0.335 3.665 7 O -0.376 6.376 8 N -0.379 5.379 9 C 0.012 3.988 10 C -0.146 4.146 11 H 0.109 0.891 12 C -0.185 4.185 13 C 0.060 3.940 14 H 0.102 0.898 15 N -0.377 5.377 16 C -0.377 4.377 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.202 1.202 24 C -0.202 4.202 25 C 0.042 3.958 26 N -0.144 5.144 27 C -0.041 4.041 28 C -0.196 4.196 29 C -0.086 4.086 30 C -0.112 4.112 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.178 0.822 46 H 0.156 0.844 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.731 -16.863 11.949 34.585 hybrid contribution -0.504 -0.712 -0.460 0.986 sum -28.235 -17.574 11.489 35.186 Atomic orbital electron populations 1.20933 0.90334 1.03522 1.03098 1.19899 0.96344 0.91956 0.95826 1.20720 0.93816 0.98121 1.02095 1.21457 0.94289 0.97376 0.94625 1.19928 0.93751 0.92005 1.05979 1.17917 0.86622 0.84043 0.77868 1.90854 1.67388 1.32233 1.47094 1.45978 1.08029 1.07931 1.75993 1.21405 0.78362 0.96920 1.02145 1.22639 0.97731 0.94402 0.99820 0.89119 1.23462 0.93657 1.00766 1.00607 1.21512 0.87575 0.95750 0.89136 0.89809 1.42764 1.39317 1.08577 1.47032 1.19136 1.14021 0.88013 1.16555 0.89151 1.24701 0.98912 0.96538 0.99049 1.69704 1.32515 1.25120 1.30739 0.86554 0.80209 0.84146 0.77664 1.21021 1.21722 1.20249 1.23919 1.01189 1.00356 0.94716 1.18603 0.88844 0.92009 0.96324 1.68354 1.38797 0.97237 1.10018 1.23218 0.91916 0.96458 0.92479 1.21979 0.95685 0.99625 1.02285 1.21496 1.00476 0.91246 0.95420 1.18677 0.93749 0.94388 1.04351 0.90241 0.90989 0.90594 0.84686 0.84586 0.76890 0.91285 0.91668 0.90321 0.91613 0.80435 0.93053 0.92338 0.90436 0.82248 0.84404 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.53 36.01 0.34 -0.13 16 2 C -0.04 -0.28 5.89 -104.47 -0.62 -0.90 16 3 C -0.13 -0.90 9.57 -40.03 -0.38 -1.28 16 4 C -0.06 -0.48 9.52 -39.16 -0.37 -0.85 16 5 C -0.11 -1.37 5.91 -104.61 -0.62 -1.99 16 6 C 0.55 7.92 7.76 -12.52 -0.10 7.82 16 7 O -0.50 -9.18 15.19 5.28 0.08 -9.10 16 8 N -0.73 -8.66 5.51 -61.38 -0.34 -9.00 16 9 C 0.13 1.77 5.51 -4.04 -0.02 1.75 16 10 C -0.13 -1.62 3.75 -89.81 -0.34 -1.96 16 11 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.15 -2.18 7.39 -25.92 -0.19 -2.37 16 13 C 0.17 3.18 4.48 -67.11 -0.30 2.88 16 14 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 15 N -0.74 -17.39 5.20 -52.63 -0.27 -17.66 16 16 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 17 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 18 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 19 N -0.93 -29.39 13.97 55.49 0.78 -28.62 16 20 Si 0.88 22.36 27.73 -169.99 -4.71 17.65 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 24 C -0.16 -2.55 7.43 -25.92 -0.19 -2.74 16 25 C 0.17 2.09 6.61 -84.58 -0.56 1.53 16 26 N -0.44 -6.03 8.44 -10.76 -0.09 -6.12 16 27 C 0.13 1.28 11.15 -17.44 -0.19 1.08 16 28 C -0.18 -1.21 10.03 -39.79 -0.40 -1.61 16 29 C -0.06 -0.42 9.36 -39.19 -0.37 -0.79 16 30 C -0.11 -1.03 5.74 -106.82 -0.61 -1.65 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.21 6.42 -51.93 -0.33 -0.12 16 33 H 0.08 0.21 8.08 -51.93 -0.42 -0.21 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.14 0.80 6.37 -52.48 -0.33 0.46 16 36 H 0.40 3.57 6.50 -40.82 -0.27 3.31 16 37 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.36 8.48 5.78 -40.82 -0.24 8.25 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 45 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 47 H 0.14 0.54 6.42 -52.49 -0.34 0.20 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -37.07 385.08 -10.49 -47.55 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.56 Total: 7.80 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -5.17 Total: -8.31 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.07 Total: -61.40 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.07 -10.49 -47.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086151010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.996 kcal (2) G-P(sol) polarization free energy of solvation -37.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds