Wall clock time and date at job start Tue Mar 31 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36353 * 119.96029 * 2 1 4 4 C 1.38862 * 121.06243 * 179.97438 * 3 2 1 5 5 C 1.38743 * 120.72342 * 0.02922 * 4 3 2 6 6 C 1.47442 * 120.33033 * 180.02562 * 5 4 3 7 7 O 1.21601 * 119.99506 * 179.97438 * 6 5 4 8 8 N 1.34769 * 120.00203 * 359.97438 * 6 5 4 9 9 C 1.46499 * 120.00181 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47562 * 180.02562 * 9 8 6 11 11 H 1.09004 * 112.90892 * 43.74568 * 10 9 8 12 12 C 1.53775 * 113.61856 * 174.99773 * 10 9 8 13 13 C 1.53788 * 87.08103 * 139.97902 * 12 10 9 14 14 H 1.08999 * 113.61116 * 89.20464 * 13 12 10 15 15 N 1.46499 * 113.61344 * 220.02116 * 13 12 10 16 16 C 1.36932 * 119.99549 * 205.00205 * 15 13 12 17 17 H 1.08003 * 120.00354 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00011 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00154 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99635 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99668 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99848 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99841 * 20 18 16 24 24 C 1.53781 * 87.08007 * 334.56773 * 13 12 10 25 25 C 1.41775 * 119.33395 * 0.26894 * 5 4 3 26 26 N 1.33351 * 121.04300 * 180.32481 * 25 5 4 27 27 C 1.31228 * 121.35181 * 179.72306 * 26 25 5 28 28 C 1.39234 * 121.69606 * 359.65693 * 27 26 25 29 29 C 1.36631 * 119.90872 * 0.02562 * 28 27 26 30 30 C 1.40434 * 119.95754 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46780 * 89.99883 * 1 2 3 32 32 H 1.08997 * 109.47234 * 209.99678 * 1 2 3 33 33 H 1.08998 * 109.46959 * 330.00181 * 1 2 3 34 34 H 1.08001 * 119.46830 * 359.97438 * 3 2 1 35 35 H 1.08007 * 119.63811 * 180.02562 * 4 3 2 36 36 H 0.97000 * 120.00140 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.47094 * 59.99936 * 9 8 6 38 38 H 1.09006 * 109.46960 * 300.00187 * 9 8 6 39 39 H 1.09004 * 113.61073 * 25.43775 * 12 10 9 40 40 H 1.08992 * 113.69287 * 254.54164 * 12 10 9 41 41 H 0.96993 * 120.00302 * 25.00170 * 15 13 12 42 42 H 0.96998 * 119.99442 * 179.97438 * 19 18 16 43 43 H 1.09001 * 113.61109 * 139.97914 * 24 13 12 44 44 H 1.08996 * 113.61745 * 270.87939 * 24 13 12 45 45 H 1.08003 * 119.15021 * 179.68053 * 27 26 25 46 46 H 1.07995 * 120.04442 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.92075 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1813 0.0000 4 6 3.5763 1.2080 0.0005 5 6 4.3080 0.0292 0.0005 6 6 5.7819 0.0677 0.0016 7 8 6.4171 -0.9693 0.0020 8 7 6.4251 1.2520 0.0022 9 6 7.8896 1.2902 0.0028 10 6 8.3619 2.7454 0.0040 11 1 7.8027 3.3724 0.6985 12 6 9.8871 2.8981 0.1275 13 6 9.7778 4.0344 -0.9029 14 1 9.6072 5.0139 -0.4563 15 7 10.8621 4.0394 -1.8881 16 6 11.2082 5.2043 -2.5192 17 1 10.6822 6.1194 -2.2904 18 6 12.2360 5.2093 -3.4523 19 7 12.5690 6.3291 -4.0586 20 14 13.1462 3.6267 -3.8476 21 1 14.3094 3.4836 -2.9355 22 1 13.6219 3.6672 -5.2538 23 1 12.2311 2.4711 -3.6677 24 6 8.4941 3.3513 -1.4033 25 6 3.6241 -1.2127 -0.0059 26 7 4.2932 -2.3662 0.0003 27 6 3.6663 -3.5191 -0.0002 28 6 2.2761 -3.5959 -0.0001 29 6 1.5305 -2.4510 0.0000 30 6 2.2083 -1.2167 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6387 2.1112 -0.0004 35 1 4.0923 2.1569 0.0009 36 1 5.9184 2.0791 0.0022 37 1 8.2665 0.7862 -0.8872 38 1 8.2659 0.7857 0.8928 39 1 10.4431 2.0330 -0.2339 40 1 10.2156 3.2313 1.1119 41 1 11.3347 3.2177 -2.0934 42 1 13.2874 6.3325 -4.7103 43 1 7.6967 4.0508 -1.6542 44 1 8.6693 2.6102 -2.1830 45 1 4.2437 -4.4318 -0.0003 46 1 1.7878 -4.5592 -0.0001 47 1 0.4513 -2.4915 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086151010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:09 Heat of formation + Delta-G solvation = 32.140769 kcal Electronic energy + Delta-G solvation = -27720.550222 eV Core-core repulsion = 23868.176179 eV Total energy + Delta-G solvation = -3852.374043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07359 -40.66872 -39.71128 -38.20707 -36.10901 -35.18792 -34.90311 -32.80310 -32.11518 -31.56287 -29.45868 -27.78693 -26.47696 -25.58071 -25.28531 -24.51757 -23.29696 -22.35487 -21.27252 -20.64586 -19.40237 -19.13446 -18.78558 -18.08699 -17.05452 -16.87311 -16.47591 -16.46503 -16.03017 -15.80453 -15.46679 -15.39351 -15.01154 -14.86957 -14.69720 -14.38218 -14.21982 -14.05711 -13.99613 -13.91316 -13.26515 -13.19864 -13.12265 -13.01188 -12.78082 -12.71990 -12.34189 -12.19115 -12.13937 -11.90724 -11.70067 -11.61491 -11.37204 -11.16746 -11.01532 -10.86939 -10.14535 -10.08238 -9.82818 -9.27006 -9.15796 -8.03374 -5.35241 -0.86497 -0.18287 0.73371 1.37014 1.38726 1.45885 1.72200 2.13441 2.23277 2.46953 3.13141 3.26893 3.32498 3.49674 3.58578 3.69671 3.71443 3.79282 3.85405 3.90875 3.96242 4.06969 4.09553 4.27168 4.36733 4.40562 4.42135 4.52617 4.57803 4.73938 4.78056 4.82700 4.88410 4.94751 4.95997 4.98364 5.02682 5.09201 5.15562 5.20870 5.21314 5.32712 5.42969 5.44706 5.57146 5.66047 5.78002 5.83588 6.22861 6.57448 7.05208 7.07496 7.30136 7.86153 8.03607 9.18082 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019685 B = 0.001987 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.065838 B =14088.669780 C =14709.524372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.028 4.028 3 C -0.139 4.139 4 C -0.039 4.039 5 C -0.160 4.160 6 C 0.546 3.454 7 O -0.555 6.555 8 N -0.714 5.714 9 C 0.141 3.859 10 C -0.096 4.096 11 H 0.123 0.877 12 C -0.137 4.137 13 C 0.147 3.853 14 H 0.082 0.918 15 N -0.745 5.745 16 C -0.229 4.229 17 H 0.062 0.938 18 C -0.066 4.066 19 N -0.983 5.983 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.257 1.257 24 C -0.155 4.155 25 C 0.135 3.865 26 N -0.499 5.499 27 C 0.118 3.882 28 C -0.176 4.176 29 C -0.053 4.053 30 C -0.130 4.130 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.412 0.588 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.364 0.636 42 H 0.257 0.743 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.172 0.828 46 H 0.175 0.825 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.989 -17.412 13.365 39.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.029 4.029 3 C -0.157 4.157 4 C -0.059 4.059 5 C -0.164 4.164 6 C 0.334 3.666 7 O -0.433 6.433 8 N -0.368 5.368 9 C 0.017 3.983 10 C -0.115 4.115 11 H 0.141 0.859 12 C -0.176 4.176 13 C 0.038 3.962 14 H 0.100 0.900 15 N -0.386 5.386 16 C -0.360 4.360 17 H 0.080 0.920 18 C -0.258 4.258 19 N -0.634 5.634 20 Si 0.780 3.220 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.182 1.182 24 C -0.196 4.196 25 C 0.012 3.988 26 N -0.207 5.207 27 C -0.053 4.053 28 C -0.195 4.195 29 C -0.079 4.079 30 C -0.132 4.132 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.187 0.813 35 H 0.177 0.823 36 H 0.250 0.750 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.197 0.803 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.189 0.811 46 H 0.192 0.808 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -31.550 -17.773 13.314 38.582 hybrid contribution 0.472 -0.396 -0.808 1.017 sum -31.078 -18.169 12.506 38.110 Atomic orbital electron populations 1.21059 0.87462 1.05079 1.04243 1.20393 0.98289 0.91149 0.93037 1.21139 0.93190 0.99592 1.01771 1.21791 0.95256 0.96942 0.91913 1.19885 0.92402 0.93574 1.10568 1.18405 0.87857 0.83672 0.76640 1.90807 1.68673 1.34013 1.49838 1.45817 1.07492 1.08199 1.75246 1.21219 0.79221 0.96776 1.01075 1.22480 0.96610 0.94271 0.98162 0.85919 1.23361 0.95274 0.98803 1.00158 1.21935 0.87415 0.97242 0.89563 0.90003 1.42819 1.40799 1.07015 1.47940 1.19142 1.12652 0.88593 1.15653 0.92023 1.25487 1.00595 0.99915 0.99776 1.69875 1.33731 1.27602 1.32173 0.85455 0.79111 0.80592 0.76886 1.20396 1.22361 1.18222 1.23744 0.99782 0.99929 0.96107 1.18958 0.90580 0.91877 0.97340 1.68276 1.40943 0.98726 1.12727 1.23646 0.93806 0.95995 0.91862 1.22300 0.94380 1.01473 1.01351 1.21985 1.02235 0.90220 0.93445 1.18994 0.92713 0.96490 1.04983 0.89011 0.89693 0.88889 0.81262 0.82266 0.75046 0.93524 0.91807 0.90782 0.89768 0.80294 0.93428 0.91273 0.92120 0.81143 0.80778 0.80363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.40 9.53 71.24 0.68 0.28 16 2 C -0.03 -0.32 5.89 -19.77 -0.12 -0.43 16 3 C -0.14 -1.49 9.57 21.98 0.21 -1.28 16 4 C -0.04 -0.59 9.52 22.54 0.21 -0.38 16 5 C -0.16 -3.97 5.91 -19.86 -0.12 -4.09 16 6 C 0.55 16.35 7.76 86.67 0.67 17.03 16 7 O -0.55 -21.78 15.19 -4.03 -0.06 -21.84 16 8 N -0.71 -16.62 5.51 -466.37 -2.57 -19.19 16 9 C 0.14 3.62 5.51 86.38 0.48 4.10 16 10 C -0.10 -2.25 3.75 -10.27 -0.04 -2.29 16 11 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 12 C -0.14 -3.84 7.39 31.12 0.23 -3.61 16 13 C 0.15 5.31 4.48 45.52 0.20 5.51 16 14 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16 15 N -0.74 -34.92 5.20 -320.44 -1.67 -36.58 16 16 C -0.23 -13.12 10.45 84.04 0.88 -12.24 16 17 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 18 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 19 N -0.98 -63.68 13.97 21.65 0.30 -63.38 16 20 Si 0.95 46.82 27.73 68.60 1.90 48.72 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 23 H -0.26 -11.67 6.52 99.48 0.65 -11.02 16 24 C -0.16 -4.71 7.43 31.12 0.23 -4.48 16 25 C 0.14 3.53 6.61 40.61 0.27 3.80 16 26 N -0.50 -14.68 8.44 -187.96 -1.59 -16.26 16 27 C 0.12 2.37 11.15 85.02 0.95 3.32 16 28 C -0.18 -2.13 10.03 22.13 0.22 -1.91 16 29 C -0.05 -0.61 9.36 22.52 0.21 -0.40 16 30 C -0.13 -2.26 5.74 -21.29 -0.12 -2.39 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.08 0.08 6.42 -2.39 -0.02 0.07 16 33 H 0.09 0.05 8.08 -2.39 -0.02 0.03 16 34 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 35 H 0.16 1.44 6.37 -2.91 -0.02 1.42 16 36 H 0.41 6.63 6.50 -92.71 -0.60 6.03 16 37 H 0.05 1.43 7.84 -2.39 -0.02 1.41 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.68 16 39 H 0.07 2.19 8.08 -2.38 -0.02 2.17 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.36 16.71 5.78 -92.71 -0.54 16.18 16 42 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 2.08 7.90 -2.39 -0.02 2.06 16 45 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 46 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 47 H 0.18 0.56 6.42 -2.91 -0.02 0.54 16 Total: -1.00 -87.27 385.08 1.65 -85.61 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.19 Total: 25.89 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.52 Total: -2.97 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -5.52 Total: -135.41 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Total: -87.27 1.65 -85.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086151010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.752 kcal (2) G-P(sol) polarization free energy of solvation -87.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds