Wall clock time and date at job start Tue Mar 31 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48502 * 109.46754 * 269.99392 * 3 2 1 5 5 H 1.48499 * 109.47423 * 29.99643 * 3 2 1 6 6 H 1.48507 * 109.46982 * 149.99932 * 3 2 1 7 7 C 1.38813 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99445 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00067 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.85134 * 23.80811 * 10 9 7 12 12 C 1.53782 * 113.61731 * 154.99822 * 10 9 7 13 13 C 1.53771 * 87.08293 * 139.98255 * 12 10 9 14 14 H 1.09008 * 113.61458 * 89.20094 * 13 12 10 15 15 C 1.52996 * 113.61827 * 220.02207 * 13 12 10 16 16 N 1.46502 * 109.47550 * 185.00009 * 15 13 12 17 17 C 1.34773 * 120.00451 * 179.97438 * 16 15 13 18 18 O 1.21643 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.47132 * 120.00427 * 180.02562 * 17 16 15 20 20 C 1.36619 * 126.97050 * 359.97357 * 19 17 16 21 21 N 1.34710 * 108.68232 * 179.75295 * 20 19 17 22 22 H 0.97000 * 124.72939 * 180.28323 * 21 20 19 23 23 C 1.36217 * 110.54582 * 0.45080 * 21 20 19 24 24 C 1.35751 * 108.68019 * 359.54995 * 23 21 20 25 25 C 1.48283 * 126.98234 * 180.24775 * 24 23 21 26 26 C 1.39394 * 120.12581 * 129.74883 * 25 24 23 27 27 C 1.38007 * 119.86593 * 179.78901 * 26 25 24 28 28 C 1.38327 * 120.12785 * 0.48545 * 27 26 25 29 29 C 1.38328 * 120.25738 * 359.74008 * 28 27 26 30 30 C 1.38008 * 120.12488 * 0.02894 * 29 28 27 31 31 C 1.53777 * 87.08368 * 334.57037 * 13 12 10 32 32 H 0.97008 * 119.99826 * 0.02562 * 1 2 3 33 33 H 0.97000 * 120.00291 * 0.02562 * 9 7 2 34 34 H 1.09002 * 113.60985 * 25.43564 * 12 10 9 35 35 H 1.08998 * 113.62000 * 254.53564 * 12 10 9 36 36 H 1.08999 * 109.46972 * 65.00064 * 15 13 12 37 37 H 1.08994 * 109.47025 * 305.00246 * 15 13 12 38 38 H 0.97006 * 119.99791 * 359.97438 * 16 15 13 39 39 H 1.08001 * 125.66155 * 0.02816 * 20 19 17 40 40 H 1.08002 * 125.66337 * 179.81831 * 23 21 20 41 41 H 1.07999 * 120.06622 * 0.02562 * 26 25 24 42 42 H 1.08004 * 119.93214 * 180.23285 * 27 26 25 43 43 H 1.07999 * 119.87102 * 179.72653 * 28 27 26 44 44 H 1.07997 * 119.94012 * 179.97438 * 29 28 27 45 45 H 1.08003 * 120.06542 * 179.97438 * 30 29 28 46 46 H 1.08999 * 113.61641 * 139.97763 * 31 13 12 47 47 H 1.09002 * 113.61940 * 270.88618 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3795 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5280 -3.2969 -0.4048 12 6 5.5262 -2.3658 -0.5939 13 6 5.9843 -3.3094 0.5305 14 1 5.9139 -4.3656 0.2700 15 6 7.3408 -2.9347 1.1306 16 7 7.7429 -3.9539 2.1032 17 6 8.9125 -3.8327 2.7619 18 8 9.6341 -2.8768 2.5491 19 6 9.3166 -4.8565 3.7382 20 6 8.6214 -5.9799 4.0861 21 7 9.3318 -6.6591 5.0073 22 1 9.0547 -7.4958 5.4123 23 6 10.4920 -6.0053 5.2936 24 6 10.5533 -4.8780 4.5398 25 6 11.6428 -3.8723 4.5259 26 6 12.2019 -3.4631 3.3164 27 6 13.2127 -2.5235 3.3094 28 6 13.6780 -1.9955 4.5003 29 6 13.1302 -2.4013 5.7039 30 6 12.1157 -3.3367 5.7228 31 6 4.7866 -2.7928 1.3450 32 1 -0.4850 0.8401 -0.0004 33 1 3.8646 -0.3621 0.0014 34 1 5.9550 -1.3659 -0.5265 35 1 5.6141 -2.7988 -1.5903 36 1 7.2634 -1.9681 1.6283 37 1 8.0855 -2.8761 0.3369 38 1 7.1673 -4.7160 2.2732 39 1 7.6633 -6.2768 3.6855 40 1 11.2412 -6.3320 5.9996 41 1 11.8421 -3.8777 2.3863 42 1 13.6440 -2.2029 2.3726 43 1 14.4722 -1.2637 4.4903 44 1 13.4977 -1.9860 6.6306 45 1 11.6890 -3.6532 6.6631 46 1 4.2773 -3.5707 1.9138 47 1 5.0130 -1.9097 1.9424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086270342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:19 Heat of formation + Delta-G solvation = 66.909514 kcal Electronic energy + Delta-G solvation = -27658.723195 eV Core-core repulsion = 23807.856838 eV Total energy + Delta-G solvation = -3850.866357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52596 -39.39545 -38.85935 -38.31485 -34.65434 -33.31008 -32.70796 -31.06383 -30.88036 -30.32824 -28.64731 -27.31296 -25.18339 -23.92112 -23.09736 -22.88523 -22.34656 -20.97637 -20.13806 -19.69975 -19.13228 -18.80895 -17.40887 -16.67090 -16.40102 -15.91467 -15.38314 -15.20323 -15.01204 -14.74700 -14.54126 -14.29196 -14.21343 -13.93617 -13.56560 -13.43526 -13.11602 -13.07736 -12.97023 -12.65305 -12.32191 -12.14650 -11.95770 -11.59212 -11.55496 -11.27101 -11.11039 -10.87973 -10.46969 -10.30050 -10.14250 -9.87345 -9.77172 -9.54282 -9.45749 -9.03476 -8.90022 -8.89262 -8.74514 -8.23235 -7.26323 -5.78306 -3.13555 1.09467 1.42723 1.52581 2.19522 2.80584 3.27467 3.38755 3.42236 3.46428 3.49971 3.81429 4.46801 4.58876 4.66782 4.70705 4.86077 4.90248 4.91923 4.93493 5.04286 5.11751 5.16515 5.30441 5.40865 5.43521 5.44677 5.49656 5.64518 5.71376 5.77217 5.83504 5.92593 5.94186 6.03012 6.19491 6.21439 6.23785 6.26361 6.38940 6.46524 6.48619 6.53761 6.57660 6.63790 6.71495 6.97555 7.00016 7.02394 7.60315 7.98180 8.36296 8.41618 9.19681 9.92607 10.12554 11.39902 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.002108 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.777288 B =13278.827090 C =14249.765750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.171 3.829 11 H 0.083 0.917 12 C -0.145 4.145 13 C -0.126 4.126 14 H 0.090 0.910 15 C 0.135 3.865 16 N -0.726 5.726 17 C 0.581 3.419 18 O -0.535 6.535 19 C -0.210 4.210 20 C 0.045 3.955 21 N -0.546 5.546 22 H 0.420 0.580 23 C -0.006 4.006 24 C -0.079 4.079 25 C -0.011 4.011 26 C -0.066 4.066 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.128 4.128 30 C -0.112 4.112 31 C -0.160 4.160 32 H 0.260 0.740 33 H 0.363 0.637 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.396 0.604 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.057 0.943 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.673 -16.427 11.483 33.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.101 0.899 12 C -0.185 4.185 13 C -0.145 4.145 14 H 0.108 0.892 15 C 0.012 3.988 16 N -0.377 5.377 17 C 0.369 3.631 18 O -0.413 6.413 19 C -0.221 4.221 20 C -0.091 4.091 21 N -0.140 5.140 22 H 0.256 0.744 23 C -0.135 4.135 24 C -0.085 4.085 25 C -0.011 4.011 26 C -0.085 4.085 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.146 4.146 30 C -0.130 4.130 31 C -0.201 4.201 32 H 0.070 0.930 33 H 0.196 0.804 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.229 0.771 39 H 0.191 0.809 40 H 0.190 0.810 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.076 0.924 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 26.870 -15.871 11.362 33.212 hybrid contribution -0.024 0.509 0.347 0.617 sum 26.847 -15.362 11.710 33.073 Atomic orbital electron populations 1.69702 1.05132 1.25871 1.57388 1.24696 0.95269 0.97296 1.01913 0.86557 0.79281 0.84915 0.77841 1.21016 1.21716 1.20232 1.19131 0.80722 0.94729 1.43154 0.89170 1.42767 1.04072 1.02070 1.88794 1.21512 0.89539 0.89994 0.92945 0.89854 1.23462 0.98882 0.99044 0.97131 1.22629 0.93246 0.99758 0.98899 0.89193 1.21372 0.95387 0.91227 0.90829 1.45883 1.21333 1.27248 1.43235 1.17373 0.80903 0.84971 0.79899 1.90805 1.52690 1.32258 1.65534 1.20461 0.97928 0.98326 1.05353 1.21915 0.98329 0.93846 0.94964 1.41412 1.17133 1.21679 1.33775 0.74361 1.21812 0.91312 0.95483 1.04856 1.19101 0.94411 0.95721 0.99307 1.18003 0.93936 0.95959 0.93238 1.21103 0.94138 0.95933 0.97290 1.21060 0.97678 0.97465 0.97976 1.21134 1.00206 1.00048 0.92700 1.20971 0.97471 0.98321 0.97875 1.21123 0.97262 0.97565 0.97073 1.23909 0.95969 1.00506 0.99740 0.93046 0.80431 0.90333 0.91655 0.91423 0.91797 0.77078 0.80859 0.81047 0.86230 0.86319 0.86508 0.86370 0.86443 0.92405 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.29 27.74 -169.99 -4.71 17.58 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.31 5.21 -52.64 -0.27 -17.58 16 10 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 11 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 12 C -0.15 -2.16 7.39 -25.92 -0.19 -2.35 16 13 C -0.13 -1.58 3.75 -89.82 -0.34 -1.91 16 14 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 15 C 0.14 1.72 5.51 -4.04 -0.02 1.70 16 16 N -0.73 -8.14 5.55 -61.48 -0.34 -8.48 16 17 C 0.58 7.77 7.80 -12.65 -0.10 7.67 16 18 O -0.54 -9.08 14.07 5.24 0.07 -9.01 16 19 C -0.21 -2.29 6.29 -103.15 -0.65 -2.94 16 20 C 0.05 0.31 11.38 -16.87 -0.19 0.12 16 21 N -0.55 -2.78 5.88 -12.63 -0.07 -2.85 16 22 H 0.42 0.62 8.96 -40.82 -0.37 0.26 16 23 C -0.01 -0.04 11.80 -16.49 -0.19 -0.24 16 24 C -0.08 -0.84 5.79 -102.93 -0.60 -1.44 16 25 C -0.01 -0.13 5.40 -104.91 -0.57 -0.69 16 26 C -0.07 -0.83 7.94 -39.24 -0.31 -1.14 16 27 C -0.12 -1.38 10.03 -39.63 -0.40 -1.78 16 28 C -0.12 -1.23 10.04 -39.52 -0.40 -1.63 16 29 C -0.13 -1.25 10.03 -39.63 -0.40 -1.65 16 30 C -0.11 -1.16 9.72 -39.24 -0.38 -1.55 16 31 C -0.16 -2.51 7.43 -25.92 -0.19 -2.70 16 32 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.36 8.45 5.78 -40.82 -0.24 8.21 16 34 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 3.30 7.41 -40.82 -0.30 3.00 16 39 H 0.17 0.65 7.44 -52.49 -0.39 0.26 16 40 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 1.58 7.48 -52.49 -0.39 1.18 16 42 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -36.45 392.10 -10.87 -47.31 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.74 Total: 10.42 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -5.48 Total: -14.75 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.09 Total: -57.46 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.45 -10.87 -47.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086270342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.223 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds