Wall clock time and date at job start Tue Mar 31 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48502 * 109.46754 * 269.99392 * 3 2 1 5 5 H 1.48499 * 109.47423 * 29.99643 * 3 2 1 6 6 H 1.48507 * 109.46982 * 149.99932 * 3 2 1 7 7 C 1.38813 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99445 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00067 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.85134 * 23.80811 * 10 9 7 12 12 C 1.53782 * 113.61731 * 154.99822 * 10 9 7 13 13 C 1.53771 * 87.08293 * 139.98255 * 12 10 9 14 14 H 1.09008 * 113.61458 * 89.20094 * 13 12 10 15 15 C 1.52996 * 113.61827 * 220.02207 * 13 12 10 16 16 N 1.46502 * 109.47550 * 185.00009 * 15 13 12 17 17 C 1.34773 * 120.00451 * 179.97438 * 16 15 13 18 18 O 1.21643 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.47132 * 120.00427 * 180.02562 * 17 16 15 20 20 C 1.36619 * 126.97050 * 359.97357 * 19 17 16 21 21 N 1.34710 * 108.68232 * 179.75295 * 20 19 17 22 22 H 0.97000 * 124.72939 * 180.28323 * 21 20 19 23 23 C 1.36217 * 110.54582 * 0.45080 * 21 20 19 24 24 C 1.35751 * 108.68019 * 359.54995 * 23 21 20 25 25 C 1.48283 * 126.98234 * 180.24775 * 24 23 21 26 26 C 1.39394 * 120.12581 * 129.74883 * 25 24 23 27 27 C 1.38007 * 119.86593 * 179.78901 * 26 25 24 28 28 C 1.38327 * 120.12785 * 0.48545 * 27 26 25 29 29 C 1.38328 * 120.25738 * 359.74008 * 28 27 26 30 30 C 1.38008 * 120.12488 * 0.02894 * 29 28 27 31 31 C 1.53777 * 87.08368 * 334.57037 * 13 12 10 32 32 H 0.97008 * 119.99826 * 0.02562 * 1 2 3 33 33 H 0.97000 * 120.00291 * 0.02562 * 9 7 2 34 34 H 1.09002 * 113.60985 * 25.43564 * 12 10 9 35 35 H 1.08998 * 113.62000 * 254.53564 * 12 10 9 36 36 H 1.08999 * 109.46972 * 65.00064 * 15 13 12 37 37 H 1.08994 * 109.47025 * 305.00246 * 15 13 12 38 38 H 0.97006 * 119.99791 * 359.97438 * 16 15 13 39 39 H 1.08001 * 125.66155 * 0.02816 * 20 19 17 40 40 H 1.08002 * 125.66337 * 179.81831 * 23 21 20 41 41 H 1.07999 * 120.06622 * 0.02562 * 26 25 24 42 42 H 1.08004 * 119.93214 * 180.23285 * 27 26 25 43 43 H 1.07999 * 119.87102 * 179.72653 * 28 27 26 44 44 H 1.07997 * 119.94012 * 179.97438 * 29 28 27 45 45 H 1.08003 * 120.06542 * 179.97438 * 30 29 28 46 46 H 1.08999 * 113.61641 * 139.97763 * 31 13 12 47 47 H 1.09002 * 113.61940 * 270.88618 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3795 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5280 -3.2969 -0.4048 12 6 5.5262 -2.3658 -0.5939 13 6 5.9843 -3.3094 0.5305 14 1 5.9139 -4.3656 0.2700 15 6 7.3408 -2.9347 1.1306 16 7 7.7429 -3.9539 2.1032 17 6 8.9125 -3.8327 2.7619 18 8 9.6341 -2.8768 2.5491 19 6 9.3166 -4.8565 3.7382 20 6 8.6214 -5.9799 4.0861 21 7 9.3318 -6.6591 5.0073 22 1 9.0547 -7.4958 5.4123 23 6 10.4920 -6.0053 5.2936 24 6 10.5533 -4.8780 4.5398 25 6 11.6428 -3.8723 4.5259 26 6 12.2019 -3.4631 3.3164 27 6 13.2127 -2.5235 3.3094 28 6 13.6780 -1.9955 4.5003 29 6 13.1302 -2.4013 5.7039 30 6 12.1157 -3.3367 5.7228 31 6 4.7866 -2.7928 1.3450 32 1 -0.4850 0.8401 -0.0004 33 1 3.8646 -0.3621 0.0014 34 1 5.9550 -1.3659 -0.5265 35 1 5.6141 -2.7988 -1.5903 36 1 7.2634 -1.9681 1.6283 37 1 8.0855 -2.8761 0.3369 38 1 7.1673 -4.7160 2.2732 39 1 7.6633 -6.2768 3.6855 40 1 11.2412 -6.3320 5.9996 41 1 11.8421 -3.8777 2.3863 42 1 13.6440 -2.2029 2.3726 43 1 14.4722 -1.2637 4.4903 44 1 13.4977 -1.9860 6.6306 45 1 11.6890 -3.6532 6.6631 46 1 4.2773 -3.5707 1.9138 47 1 5.0130 -1.9097 1.9424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086270342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:19 Heat of formation + Delta-G solvation = 42.720249 kcal Electronic energy + Delta-G solvation = -27659.772121 eV Core-core repulsion = 23807.856838 eV Total energy + Delta-G solvation = -3851.915282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12638 -40.50134 -39.61454 -39.48620 -36.04945 -34.95972 -33.38511 -32.79568 -31.75204 -31.26308 -29.32775 -28.44611 -26.45667 -25.63489 -23.93418 -23.71977 -23.20275 -22.33111 -21.09417 -20.68281 -20.14244 -19.49459 -19.28695 -17.39964 -17.30271 -17.05879 -16.46381 -16.35382 -16.01104 -15.90971 -15.73574 -15.52440 -14.99734 -14.82483 -14.66277 -14.40217 -14.20677 -14.15659 -13.96591 -13.83307 -13.70284 -13.24757 -13.16569 -13.04003 -12.95246 -12.69476 -12.13386 -12.00729 -11.90015 -11.87292 -11.67948 -11.57578 -11.11393 -10.90511 -10.80827 -10.19122 -9.99889 -9.70882 -9.41642 -9.25934 -8.90492 -8.02855 -5.34619 0.33162 0.62224 0.86604 1.37630 1.39315 1.46513 1.54122 2.27082 2.47356 2.47590 2.62358 3.02913 3.27715 3.61253 3.73596 3.82591 3.92292 4.04735 4.11119 4.16123 4.19473 4.23965 4.30449 4.34810 4.40335 4.47362 4.58909 4.68010 4.72617 4.74865 4.83754 4.96700 4.98107 5.03513 5.08540 5.21691 5.23569 5.25715 5.36180 5.49839 5.54694 5.68729 5.69699 5.70379 5.78676 5.85055 5.94728 6.21378 6.23449 6.65791 6.77169 7.08206 7.45153 7.87054 8.04344 9.18637 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.002108 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.777288 B =13278.827090 C =14249.765750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.257 1.257 7 C -0.229 4.229 8 H 0.062 0.938 9 N -0.745 5.745 10 C 0.146 3.854 11 H 0.081 0.919 12 C -0.138 4.138 13 C -0.095 4.095 14 H 0.122 0.878 15 C 0.142 3.858 16 N -0.714 5.714 17 C 0.575 3.425 18 O -0.584 6.584 19 C -0.255 4.255 20 C 0.072 3.928 21 N -0.527 5.527 22 H 0.441 0.559 23 C 0.013 3.987 24 C -0.121 4.121 25 C -0.023 4.023 26 C -0.091 4.091 27 C -0.139 4.139 28 C -0.132 4.132 29 C -0.131 4.131 30 C -0.122 4.122 31 C -0.154 4.154 32 H 0.257 0.743 33 H 0.364 0.636 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.412 0.588 39 H 0.209 0.791 40 H 0.201 0.799 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.068 0.932 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.464 -18.372 12.978 36.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.258 4.258 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.182 1.182 7 C -0.360 4.360 8 H 0.080 0.920 9 N -0.386 5.386 10 C 0.038 3.962 11 H 0.099 0.901 12 C -0.177 4.177 13 C -0.114 4.114 14 H 0.140 0.860 15 C 0.018 3.982 16 N -0.366 5.366 17 C 0.365 3.635 18 O -0.465 6.465 19 C -0.265 4.265 20 C -0.066 4.066 21 N -0.122 5.122 22 H 0.282 0.718 23 C -0.117 4.117 24 C -0.127 4.127 25 C -0.023 4.023 26 C -0.109 4.109 27 C -0.157 4.157 28 C -0.150 4.150 29 C -0.149 4.149 30 C -0.140 4.140 31 C -0.194 4.194 32 H 0.066 0.934 33 H 0.197 0.803 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.226 0.774 40 H 0.217 0.783 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.157 0.843 44 H 0.162 0.838 45 H 0.154 0.846 46 H 0.087 0.913 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 28.700 -17.914 12.877 36.200 hybrid contribution -0.582 0.944 -0.089 1.113 sum 28.118 -16.970 12.788 35.244 Atomic orbital electron populations 1.69873 1.06995 1.26533 1.60030 1.25480 0.96109 1.01099 1.03066 0.85460 0.78509 0.80058 0.78052 1.20429 1.22385 1.18164 1.19138 0.82802 0.93483 1.40574 0.92041 1.42827 1.02489 1.04095 1.89202 1.21947 0.90795 0.87960 0.95543 0.90097 1.23364 0.95851 0.99703 0.98781 1.22463 0.91568 1.00900 0.96441 0.85960 1.21155 0.95379 0.90753 0.90906 1.45705 1.21104 1.27291 1.42510 1.17852 0.80694 0.84964 0.80029 1.90773 1.54149 1.34369 1.67187 1.20400 0.99591 0.99799 1.06723 1.22322 0.98666 0.92001 0.93601 1.41460 1.16107 1.21963 1.32685 0.71788 1.22148 0.91858 0.94021 1.03643 1.19321 0.94690 0.97308 1.01385 1.18283 0.94294 0.96458 0.93312 1.21090 0.95388 0.97309 0.97142 1.21277 0.97776 0.97575 0.99091 1.21429 1.00778 1.00395 0.92391 1.21351 0.96946 0.97761 0.98796 1.21411 0.97522 0.97664 0.97374 1.23724 0.97010 1.00358 0.98342 0.93435 0.80303 0.90859 0.89881 0.93822 0.91983 0.75150 0.77402 0.78261 0.88303 0.85639 0.84329 0.83797 0.84555 0.91299 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.45 13.97 21.65 0.30 -63.15 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.95 46.53 27.74 68.60 1.90 48.43 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 6 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 7 C -0.23 -13.01 10.45 84.03 0.88 -12.13 16 8 H 0.06 3.78 8.06 -2.91 -0.02 3.75 16 9 N -0.75 -34.62 5.21 -320.44 -1.67 -36.29 16 10 C 0.15 5.19 4.48 45.52 0.20 5.39 16 11 H 0.08 2.90 8.10 -2.38 -0.02 2.88 16 12 C -0.14 -3.78 7.39 31.12 0.23 -3.55 16 13 C -0.09 -2.12 3.75 -10.27 -0.04 -2.15 16 14 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 15 C 0.14 3.44 5.51 86.38 0.48 3.92 16 16 N -0.71 -14.91 5.55 -466.66 -2.59 -17.50 16 17 C 0.57 15.34 7.80 86.58 0.68 16.01 16 18 O -0.58 -20.73 14.07 -4.17 -0.06 -20.79 16 19 C -0.26 -5.27 6.29 -18.91 -0.12 -5.39 16 20 C 0.07 0.75 11.38 83.87 0.95 1.70 16 21 N -0.53 -3.32 5.88 -193.88 -1.14 -4.46 16 22 H 0.44 -0.77 8.96 -92.71 -0.83 -1.60 16 23 C 0.01 0.15 11.80 83.44 0.98 1.13 16 24 C -0.12 -2.48 5.79 -18.77 -0.11 -2.59 16 25 C -0.02 -0.55 5.40 -20.05 -0.11 -0.66 16 26 C -0.09 -2.43 7.94 22.49 0.18 -2.26 16 27 C -0.14 -3.27 10.03 22.24 0.22 -3.05 16 28 C -0.13 -2.61 10.04 22.31 0.22 -2.38 16 29 C -0.13 -2.41 10.03 22.24 0.22 -2.18 16 30 C -0.12 -2.44 9.72 22.49 0.22 -2.22 16 31 C -0.15 -4.55 7.43 31.12 0.23 -4.31 16 32 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 33 H 0.36 16.57 5.78 -92.71 -0.54 16.03 16 34 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.41 5.60 7.41 -92.70 -0.69 4.91 16 39 H 0.21 0.55 7.44 -2.91 -0.02 0.53 16 40 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.10 2.92 7.48 -2.91 -0.02 2.90 16 42 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 44 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.06 2.02 7.90 -2.39 -0.02 2.00 16 Total: -1.00 -84.28 392.10 1.44 -82.83 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -1.10 Total: 29.11 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.79 Total: -18.19 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -5.09 Total: -121.40 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -84.28 1.44 -82.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086270342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.554 kcal (2) G-P(sol) polarization free energy of solvation -84.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds