Wall clock time and date at job start Tue Mar 31 2020 23:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36541 * 120.87599 * 2 1 4 4 C 1.40240 * 119.81220 * 180.26467 * 3 2 1 5 5 C 1.48271 * 119.23480 * 179.74397 * 4 3 2 6 6 O 1.21503 * 120.00417 * 359.73081 * 5 4 3 7 7 N 1.34782 * 119.99709 * 179.73510 * 5 4 3 8 8 C 1.46503 * 119.99635 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46818 * 179.97438 * 8 7 5 10 10 H 1.09002 * 112.85017 * 45.33137 * 9 8 7 11 11 C 1.53786 * 113.61503 * 176.52755 * 9 8 7 12 12 C 1.53783 * 87.08050 * 140.06140 * 11 9 8 13 13 H 1.09000 * 113.61254 * 219.93295 * 12 11 9 14 14 N 1.46503 * 113.61007 * 89.11544 * 12 11 9 15 15 C 1.36937 * 119.99695 * 154.99633 * 14 12 11 16 16 H 1.07998 * 120.00041 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00130 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99495 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99976 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47692 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46895 * 120.00491 * 19 17 15 22 22 H 1.48503 * 109.47217 * 240.00216 * 19 17 15 23 23 C 1.53781 * 113.61337 * 274.13548 * 9 8 7 24 24 N 1.31904 * 121.52947 * 359.47295 * 4 3 2 25 25 C 1.33245 * 121.29522 * 0.27193 * 24 4 3 26 26 C 1.40834 * 121.00535 * 179.97438 * 25 24 4 27 27 C 1.35984 * 119.73907 * 180.02562 * 26 25 24 28 28 C 1.39440 * 121.09337 * 359.95423 * 27 26 25 29 29 C 1.36125 * 120.91999 * 0.02562 * 28 27 26 30 30 C 1.40429 * 119.64302 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.46709 * 270.23161 * 1 2 3 32 32 H 1.08989 * 109.47368 * 30.23142 * 1 2 3 33 33 H 1.09004 * 109.46817 * 150.23527 * 1 2 3 34 34 H 1.08000 * 120.09339 * 0.03443 * 3 2 1 35 35 H 0.96996 * 120.00351 * 359.97438 * 7 5 4 36 36 H 1.08997 * 109.47388 * 60.00196 * 8 7 5 37 37 H 1.09004 * 109.47244 * 299.99375 * 8 7 5 38 38 H 1.08992 * 113.61675 * 254.61398 * 11 9 8 39 39 H 1.09000 * 113.60973 * 25.51686 * 11 9 8 40 40 H 0.96995 * 120.00321 * 335.00748 * 14 12 11 41 41 H 0.97000 * 119.99441 * 179.97438 * 18 17 15 42 42 H 1.08999 * 113.61567 * 334.48261 * 23 9 8 43 43 H 1.08998 * 113.61196 * 105.38615 * 23 9 8 44 44 H 1.08003 * 120.12213 * 0.02562 * 26 25 24 45 45 H 1.08007 * 119.45339 * 180.02562 * 27 26 25 46 46 H 1.08002 * 119.54017 * 180.02562 * 28 27 26 47 47 H 1.07995 * 120.18135 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6099 1.1459 -0.0056 5 6 4.3579 2.4261 -0.0113 6 8 3.7559 3.4815 -0.0161 7 7 5.7057 2.4190 -0.0114 8 6 6.4448 3.6839 -0.0165 9 6 7.9476 3.3965 -0.0147 10 1 8.2309 2.6204 -0.7258 11 6 8.8169 4.6618 -0.1051 12 6 9.7548 3.9951 0.9151 13 1 10.1443 4.6836 1.6650 14 7 10.7996 3.1719 0.3010 15 6 11.9715 2.9413 0.9708 16 1 12.1254 3.3660 1.9518 17 6 12.9614 2.1609 0.3893 18 7 12.7736 1.6430 -0.8061 19 14 14.5597 1.8458 1.3033 20 1 14.5219 2.5343 2.6185 21 1 14.7297 0.3857 1.5141 22 1 15.6979 2.3664 0.5041 23 6 8.5330 3.1869 1.3917 24 7 4.2787 0.0090 -0.0006 25 6 3.6483 -1.1649 0.0046 26 6 4.3685 -2.3751 0.0094 27 6 3.6988 -3.5586 0.0141 28 6 2.3049 -3.5973 0.0153 29 6 1.5733 -2.4494 0.0112 30 6 2.2293 -1.2077 0.0052 31 1 -0.3633 0.0042 1.0277 32 1 -0.3633 0.8878 -0.5174 33 1 -0.3633 -0.8921 -0.5102 34 1 1.6836 2.1162 0.0006 35 1 6.1863 1.5765 -0.0073 36 1 6.1845 4.2604 0.8712 37 1 6.1844 4.2533 -0.9088 38 1 9.2716 4.8101 -1.0845 39 1 8.3250 5.5574 0.2743 40 1 10.6614 2.7904 -0.5799 41 1 13.4654 1.0980 -1.2125 42 1 7.9637 3.6800 2.1796 43 1 8.7588 2.1452 1.6199 44 1 5.4484 -2.3632 0.0093 45 1 4.2558 -4.4840 0.0182 46 1 1.7987 -4.5513 0.0195 47 1 0.4943 -2.4932 0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086403284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:04 Heat of formation + Delta-G solvation = 44.860192 kcal Electronic energy + Delta-G solvation = -27685.414151 eV Core-core repulsion = 23833.591664 eV Total energy + Delta-G solvation = -3851.822487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40038 -39.68462 -38.48980 -37.16958 -35.24214 -34.57372 -33.16765 -31.19431 -30.72281 -30.10798 -28.24989 -27.55125 -25.05695 -24.90548 -23.91678 -23.56730 -21.91971 -21.57904 -20.53916 -18.68768 -18.34841 -17.98385 -17.47495 -17.11903 -15.90826 -15.70093 -15.61269 -15.07168 -14.90141 -14.70849 -14.56773 -14.25458 -14.08753 -13.73509 -13.64299 -13.51281 -13.22143 -13.20806 -12.86758 -12.57919 -12.28092 -11.99841 -11.99003 -11.88584 -11.77006 -11.36964 -11.02869 -10.85350 -10.56589 -10.52439 -10.44683 -10.12707 -9.96429 -9.72782 -9.68016 -9.44252 -9.18795 -8.95051 -8.86755 -8.57525 -6.98502 -5.79718 -3.08545 -0.13734 0.34404 1.58097 2.15312 3.02923 3.05334 3.42190 3.48122 3.50262 3.78227 3.80411 4.09617 4.29935 4.39004 4.46795 4.56737 4.75375 4.79469 4.87960 5.00942 5.08657 5.10047 5.10195 5.10872 5.25018 5.32012 5.46736 5.50684 5.61204 5.64569 5.65723 5.71232 5.72677 5.88278 5.96772 5.99920 6.05921 6.12561 6.13463 6.23838 6.39588 6.40948 6.45865 6.61469 6.78244 6.92089 7.07183 7.30159 7.60655 7.70635 8.12904 8.39543 9.50215 10.08123 10.42316 11.42820 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.002259 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.343098 B =12390.457457 C =14274.698816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.129 4.129 4 C 0.123 3.877 5 C 0.565 3.435 6 O -0.537 6.537 7 N -0.700 5.700 8 C 0.128 3.872 9 C -0.120 4.120 10 H 0.094 0.906 11 C -0.147 4.147 12 C 0.168 3.832 13 H 0.062 0.938 14 N -0.706 5.706 15 C -0.241 4.241 16 H 0.073 0.927 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.169 4.169 24 N -0.444 5.444 25 C 0.127 3.873 26 C -0.082 4.082 27 C -0.105 4.105 28 C -0.107 4.107 29 C -0.105 4.105 30 C -0.087 4.087 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.150 0.850 35 H 0.414 0.586 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.142 0.858 45 H 0.133 0.867 46 H 0.129 0.871 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.290 -7.933 0.937 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.150 4.150 4 C -0.031 4.031 5 C 0.349 3.651 6 O -0.414 6.414 7 N -0.350 5.350 8 C 0.006 3.994 9 C -0.139 4.139 10 H 0.112 0.888 11 C -0.187 4.187 12 C 0.055 3.945 13 H 0.081 0.919 14 N -0.344 5.344 15 C -0.372 4.372 16 H 0.091 0.909 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.210 4.210 24 N -0.156 5.156 25 C 0.004 3.996 26 C -0.101 4.101 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.123 4.123 30 C -0.089 4.089 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.168 0.832 35 H 0.250 0.750 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.159 0.841 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.561 -7.224 1.044 27.545 hybrid contribution 0.192 -0.901 0.120 0.929 sum -26.369 -8.125 1.165 27.617 Atomic orbital electron populations 1.20875 0.89448 1.03804 1.03336 1.20138 0.96913 0.91661 0.95270 1.21603 0.93610 0.99665 1.00117 1.21358 0.91693 0.92188 0.97818 1.17905 0.82645 0.87200 0.77345 1.90770 1.68852 1.31148 1.50632 1.45951 1.05571 1.11279 1.72198 1.21581 0.91104 0.84809 1.01944 1.22718 0.91087 1.00085 0.99967 0.88787 1.23439 0.97863 0.95887 1.01488 1.21107 0.87547 0.92044 0.93776 0.91947 1.42181 1.14089 1.58226 1.19923 1.19338 0.92461 1.25577 0.99791 0.90942 1.24769 0.98782 1.00547 0.96880 1.69677 1.34380 1.38570 1.15413 0.86100 0.83653 0.77563 0.78775 1.20502 1.21861 1.21848 1.23932 1.00287 1.02310 0.94444 1.67845 1.39867 0.97401 1.10502 1.18850 0.89741 0.92005 0.99021 1.20967 1.00924 0.89898 0.98303 1.20970 0.94443 0.98226 0.98855 1.21018 0.94192 0.98594 0.98744 1.21014 1.00151 0.91092 1.00054 1.18844 0.93921 0.94359 1.01757 0.89998 0.90332 0.90614 0.83239 0.75007 0.91274 0.91502 0.91287 0.90430 0.78097 0.93510 0.91415 0.91452 0.84056 0.84938 0.85339 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.59 36.01 0.35 -0.30 16 2 C -0.03 -0.29 5.92 -104.30 -0.62 -0.91 16 3 C -0.13 -1.43 9.23 -39.44 -0.36 -1.80 16 4 C 0.12 1.63 6.75 -82.96 -0.56 1.07 16 5 C 0.57 8.33 7.81 -12.13 -0.09 8.23 16 6 O -0.54 -9.02 16.28 5.36 0.09 -8.93 16 7 N -0.70 -9.83 5.54 -61.11 -0.34 -10.17 16 8 C 0.13 1.81 5.50 -4.04 -0.02 1.78 16 9 C -0.12 -1.86 3.62 -89.80 -0.33 -2.18 16 10 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 11 C -0.15 -2.38 7.39 -25.92 -0.19 -2.57 16 12 C 0.17 3.30 4.57 -66.97 -0.31 2.99 16 13 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 14 N -0.71 -17.51 5.31 -52.50 -0.28 -17.79 16 15 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 19 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C -0.17 -2.88 7.45 -25.78 -0.19 -3.07 16 24 N -0.44 -5.88 9.47 -7.54 -0.07 -5.95 16 25 C 0.13 1.50 6.61 -84.85 -0.56 0.94 16 26 C -0.08 -0.81 9.99 -39.41 -0.39 -1.21 16 27 C -0.11 -0.78 9.94 -39.94 -0.40 -1.18 16 28 C -0.11 -0.71 9.95 -39.89 -0.40 -1.10 16 29 C -0.10 -0.76 9.31 -39.52 -0.37 -1.13 16 30 C -0.09 -0.86 5.75 -106.71 -0.61 -1.47 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.37 8.10 -51.94 -0.42 -0.05 16 33 H 0.08 0.30 6.51 -51.93 -0.34 -0.03 16 34 H 0.15 1.52 7.60 -52.49 -0.40 1.12 16 35 H 0.41 5.67 7.78 -40.82 -0.32 5.35 16 36 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.39 10.11 7.90 -40.82 -0.32 9.79 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 46 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 47 H 0.13 0.62 6.43 -52.49 -0.34 0.28 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -32.75 392.70 -11.01 -43.76 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.72 Total: 12.31 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -5.30 Total: -9.19 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.04 Total: -61.15 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.75 -11.01 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086403284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.621 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds