Wall clock time and date at job start Tue Mar 31 2020 22:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99952 * 2 1 4 4 H 1.48503 * 109.46756 * 240.00101 * 3 2 1 5 5 H 1.48500 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47360 * 120.00088 * 3 2 1 7 7 C 1.38811 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00364 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00334 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.01737 * 33.61094 * 10 9 7 12 12 C 1.54266 * 110.03728 * 272.16657 * 10 9 7 13 13 C 1.54886 * 104.19729 * 264.32895 * 12 10 9 14 14 C 1.54888 * 102.74483 * 322.05196 * 13 12 10 15 15 H 1.09001 * 110.60067 * 279.21035 * 14 13 12 16 16 C 1.53008 * 110.48512 * 156.62338 * 14 13 12 17 17 N 1.46504 * 109.46841 * 70.22732 * 16 14 13 18 18 C 1.34773 * 119.99531 * 180.02562 * 17 16 14 19 19 O 1.21565 * 120.00389 * 359.97438 * 18 17 16 20 20 C 1.47781 * 119.99824 * 179.97438 * 18 17 16 21 21 C 1.40648 * 119.69826 * 0.02562 * 20 18 17 22 22 C 1.35844 * 120.87654 * 179.97438 * 21 20 18 23 23 C 1.40395 * 119.84627 * 359.97438 * 22 21 20 24 24 C 1.40638 * 121.98408 * 179.72547 * 23 22 21 25 25 C 1.36221 * 118.73118 * 179.83220 * 24 23 22 26 26 N 1.32597 * 121.90342 * 0.45772 * 25 24 23 27 27 C 1.31233 * 122.73891 * 359.76541 * 26 25 24 28 28 C 1.40552 * 119.88878 * 359.97438 * 27 26 25 29 29 C 1.38568 * 119.69918 * 179.97438 * 20 18 17 30 30 C 1.53879 * 110.03424 * 154.99883 * 10 9 7 31 31 H 0.97001 * 119.99956 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99723 * 0.02562 * 9 7 2 33 33 H 1.09008 * 110.48170 * 23.00086 * 12 10 9 34 34 H 1.09000 * 110.49049 * 145.50820 * 12 10 9 35 35 H 1.08997 * 110.75482 * 203.74326 * 13 12 10 36 36 H 1.08994 * 110.76160 * 80.36652 * 13 12 10 37 37 H 1.08995 * 109.46792 * 310.22407 * 16 14 13 38 38 H 1.08996 * 109.47006 * 190.22528 * 16 14 13 39 39 H 0.96992 * 120.00279 * 359.97438 * 17 16 14 40 40 H 1.07995 * 119.56348 * 359.97438 * 21 20 18 41 41 H 1.07998 * 120.07962 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.62999 * 0.04264 * 24 23 22 43 43 H 1.08000 * 119.04911 * 180.20011 * 25 24 23 44 44 H 1.07996 * 120.05915 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.34092 * 0.04428 * 29 20 18 46 46 H 1.09003 * 110.02815 * 0.02562 * 30 10 9 47 47 H 1.08997 * 110.03411 * 238.57495 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9834 -3.5533 0.5675 12 6 2.3699 -4.0870 -1.4477 13 6 1.2216 -5.0613 -1.8100 14 6 0.9999 -5.8353 -0.4868 15 1 1.7394 -6.6286 -0.3780 16 6 -0.4157 -6.4138 -0.4356 17 7 -0.5325 -7.5052 -1.4059 18 6 -1.6988 -8.1675 -1.5379 19 8 -2.6537 -7.8596 -0.8515 20 6 -1.8169 -9.2681 -2.5170 21 6 -0.7079 -9.6194 -3.3076 22 6 -0.7896 -10.6273 -4.2146 23 6 -1.9940 -11.3320 -4.3694 24 6 -2.1303 -12.3791 -5.2984 25 6 -3.3286 -13.0204 -5.3911 26 7 -4.3660 -12.6792 -4.6391 27 6 -4.3139 -11.7105 -3.7552 28 6 -3.1213 -10.9884 -3.5771 29 6 -3.0188 -9.9452 -2.6472 30 6 1.1871 -4.7684 0.6115 31 1 -0.4850 0.8401 -0.0004 32 1 0.3557 -2.3881 -0.0002 33 1 2.3613 -3.2232 -2.1125 34 1 3.3333 -4.5947 -1.4959 35 1 1.5271 -5.7389 -2.6073 36 1 0.3233 -4.5120 -2.0914 37 1 -1.1362 -5.6329 -0.6785 38 1 -0.6164 -6.7948 0.5656 39 1 0.2293 -7.7506 -1.9539 40 1 0.2209 -9.0807 -3.1920 41 1 0.0698 -10.8860 -4.8152 42 1 -1.2998 -12.6714 -5.9238 43 1 -3.4380 -13.8274 -6.1004 44 1 -5.1858 -11.4686 -3.1658 45 1 -3.8677 -9.6720 -2.0378 46 1 0.2192 -4.3639 0.9076 47 1 1.6899 -5.2050 1.4744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086847334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:00 Heat of formation + Delta-G solvation = 18.176988 kcal Electronic energy + Delta-G solvation = -27503.185115 eV Core-core repulsion = 23650.205557 eV Total energy + Delta-G solvation = -3852.979558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34121 -39.92500 -38.25025 -37.31473 -35.04528 -33.44590 -33.36815 -31.88089 -30.64759 -30.17069 -28.97025 -27.39074 -25.44014 -24.39942 -23.86163 -23.17066 -22.63222 -21.22153 -20.03130 -19.26894 -18.46018 -18.20149 -17.19129 -17.10940 -16.31185 -16.01656 -15.55937 -15.45879 -15.04204 -14.85407 -14.58631 -14.44098 -14.14336 -14.01836 -13.76858 -13.56564 -13.41872 -13.23272 -12.67003 -12.50885 -12.36762 -12.15400 -11.74336 -11.42668 -11.22438 -10.85439 -10.74073 -10.68216 -10.61125 -10.52393 -10.30344 -10.26267 -10.17488 -9.97627 -9.86323 -9.62651 -9.62244 -9.15983 -8.87808 -8.56301 -6.93629 -5.75806 -3.04285 -0.23156 0.24019 1.34868 2.16755 2.95311 3.06508 3.43715 3.48313 3.49421 3.63821 3.92902 4.03931 4.17961 4.26043 4.42592 4.53200 4.59173 4.65177 4.71224 4.86410 4.92708 5.06192 5.11027 5.19950 5.29166 5.41384 5.47704 5.54158 5.54488 5.69934 5.71461 5.77967 5.84015 5.89002 5.99118 6.05191 6.09104 6.12056 6.18894 6.22680 6.32353 6.34128 6.44993 6.64161 6.73204 6.90042 7.08945 7.31809 7.48786 7.70835 8.01695 8.43400 9.53901 10.13451 10.47270 11.46658 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.001751 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.435896 B =15990.872795 C =16218.970360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.104 4.104 15 H 0.074 0.926 16 C 0.125 3.875 17 N -0.719 5.719 18 C 0.554 3.446 19 O -0.534 6.534 20 C -0.134 4.134 21 C -0.071 4.071 22 C -0.117 4.117 23 C -0.008 4.008 24 C -0.161 4.161 25 C 0.084 3.916 26 N -0.492 5.492 27 C 0.159 3.841 28 C -0.124 4.124 29 C -0.015 4.015 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.168 0.832 45 H 0.150 0.850 46 H 0.073 0.927 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -27.821 -9.705 29.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.361 5.361 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.093 0.907 16 C 0.003 3.997 17 N -0.370 5.370 18 C 0.340 3.660 19 O -0.412 6.412 20 C -0.137 4.137 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.014 4.014 24 C -0.180 4.180 25 C -0.059 4.059 26 N -0.200 5.200 27 C -0.012 4.012 28 C -0.126 4.126 29 C -0.036 4.036 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.172 0.828 44 H 0.185 0.815 45 H 0.168 0.832 46 H 0.092 0.908 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.102 -27.962 -9.391 29.660 hybrid contribution 1.473 1.325 -0.298 2.004 sum -1.629 -26.637 -9.689 28.391 Atomic orbital electron populations 1.69649 1.05080 1.25747 1.57595 1.24740 0.95494 0.97656 1.03075 0.86290 0.78523 0.83696 0.77794 1.21354 1.21735 1.21303 1.19211 0.90970 0.84243 1.42739 0.91285 1.42533 1.05652 0.99680 1.88281 1.20797 0.94144 0.86103 0.92578 0.93368 1.23124 0.95964 0.98639 1.00970 1.22503 1.00054 0.97415 0.95081 1.22247 0.94545 0.97834 0.97637 0.90721 1.21595 0.97798 0.88462 0.91888 1.45963 1.13444 1.35937 1.41684 1.18178 0.83105 0.81929 0.82770 1.90807 1.37671 1.66939 1.45808 1.20009 0.95180 0.98908 0.99642 1.21056 0.97763 0.96158 0.94051 1.20868 0.96930 0.96273 0.99421 1.18308 0.93584 0.94959 0.94515 1.21947 0.99844 0.96765 0.99467 1.22287 0.88467 0.98440 0.96685 1.67498 1.31496 1.15212 1.05784 1.23362 0.95783 0.89099 0.92965 1.19021 0.95612 0.98951 0.99032 1.21483 0.97321 0.90930 0.93885 1.22469 1.01525 0.95389 0.96631 0.93474 0.78256 0.90957 0.93337 0.93069 0.91232 0.90673 0.91347 0.76616 0.85045 0.84439 0.84186 0.82808 0.81476 0.83237 0.90837 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.59 5.07 -52.34 -0.27 -17.86 16 10 C 0.17 3.30 3.55 -66.82 -0.24 3.06 16 11 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 12 C -0.15 -2.43 6.54 -25.07 -0.16 -2.59 16 13 C -0.11 -1.55 6.19 -24.74 -0.15 -1.70 16 14 C -0.10 -1.27 2.89 -88.96 -0.26 -1.53 16 15 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.13 1.56 4.96 -4.04 -0.02 1.54 16 17 N -0.72 -7.57 5.40 -61.27 -0.33 -7.90 16 18 C 0.55 6.75 7.76 -12.36 -0.10 6.66 16 19 O -0.53 -8.53 16.30 5.31 0.09 -8.44 16 20 C -0.13 -1.30 5.87 -104.96 -0.62 -1.91 16 21 C -0.07 -0.51 9.44 -39.53 -0.37 -0.88 16 22 C -0.12 -0.77 9.77 -39.63 -0.39 -1.16 16 23 C -0.01 -0.07 5.75 -106.74 -0.61 -0.68 16 24 C -0.16 -1.03 9.87 -39.40 -0.39 -1.42 16 25 C 0.08 0.60 11.07 -17.95 -0.20 0.40 16 26 N -0.49 -4.43 10.30 -13.12 -0.14 -4.57 16 27 C 0.16 1.28 11.05 -16.94 -0.19 1.10 16 28 C -0.12 -1.07 5.74 -106.87 -0.61 -1.68 16 29 C -0.02 -0.14 9.37 -38.75 -0.36 -0.50 16 30 C -0.12 -1.86 6.14 -25.61 -0.16 -2.02 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.03 7.52 -40.82 -0.31 9.72 16 33 H 0.07 1.41 8.04 -51.92 -0.42 0.99 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 37 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 3.09 6.42 -40.82 -0.26 2.83 16 40 H 0.13 0.64 6.34 -52.49 -0.33 0.31 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 43 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.15 1.30 7.61 -52.49 -0.40 0.90 16 46 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -33.87 388.80 -10.86 -44.72 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.70 Total: 8.81 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -5.07 Total: -10.54 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.01 Total: -57.68 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.87 -10.86 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086847334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.899 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds