Wall clock time and date at job start Tue Mar 31 2020 22:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99952 * 2 1 4 4 H 1.48503 * 109.46756 * 240.00101 * 3 2 1 5 5 H 1.48500 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47360 * 120.00088 * 3 2 1 7 7 C 1.38811 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00364 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00334 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.01737 * 33.61094 * 10 9 7 12 12 C 1.54266 * 110.03728 * 272.16657 * 10 9 7 13 13 C 1.54886 * 104.19729 * 264.32895 * 12 10 9 14 14 C 1.54888 * 102.74483 * 322.05196 * 13 12 10 15 15 H 1.09001 * 110.60067 * 279.21035 * 14 13 12 16 16 C 1.53008 * 110.48512 * 156.62338 * 14 13 12 17 17 N 1.46504 * 109.46841 * 70.22732 * 16 14 13 18 18 C 1.34773 * 119.99531 * 180.02562 * 17 16 14 19 19 O 1.21565 * 120.00389 * 359.97438 * 18 17 16 20 20 C 1.47781 * 119.99824 * 179.97438 * 18 17 16 21 21 C 1.40648 * 119.69826 * 0.02562 * 20 18 17 22 22 C 1.35844 * 120.87654 * 179.97438 * 21 20 18 23 23 C 1.40395 * 119.84627 * 359.97438 * 22 21 20 24 24 C 1.40638 * 121.98408 * 179.72547 * 23 22 21 25 25 C 1.36221 * 118.73118 * 179.83220 * 24 23 22 26 26 N 1.32597 * 121.90342 * 0.45772 * 25 24 23 27 27 C 1.31233 * 122.73891 * 359.76541 * 26 25 24 28 28 C 1.40552 * 119.88878 * 359.97438 * 27 26 25 29 29 C 1.38568 * 119.69918 * 179.97438 * 20 18 17 30 30 C 1.53879 * 110.03424 * 154.99883 * 10 9 7 31 31 H 0.97001 * 119.99956 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99723 * 0.02562 * 9 7 2 33 33 H 1.09008 * 110.48170 * 23.00086 * 12 10 9 34 34 H 1.09000 * 110.49049 * 145.50820 * 12 10 9 35 35 H 1.08997 * 110.75482 * 203.74326 * 13 12 10 36 36 H 1.08994 * 110.76160 * 80.36652 * 13 12 10 37 37 H 1.08995 * 109.46792 * 310.22407 * 16 14 13 38 38 H 1.08996 * 109.47006 * 190.22528 * 16 14 13 39 39 H 0.96992 * 120.00279 * 359.97438 * 17 16 14 40 40 H 1.07995 * 119.56348 * 359.97438 * 21 20 18 41 41 H 1.07998 * 120.07962 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.62999 * 0.04264 * 24 23 22 43 43 H 1.08000 * 119.04911 * 180.20011 * 25 24 23 44 44 H 1.07996 * 120.05915 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.34092 * 0.04428 * 29 20 18 46 46 H 1.09003 * 110.02815 * 0.02562 * 30 10 9 47 47 H 1.08997 * 110.03411 * 238.57495 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9834 -3.5533 0.5675 12 6 2.3699 -4.0870 -1.4477 13 6 1.2216 -5.0613 -1.8100 14 6 0.9999 -5.8353 -0.4868 15 1 1.7394 -6.6286 -0.3780 16 6 -0.4157 -6.4138 -0.4356 17 7 -0.5325 -7.5052 -1.4059 18 6 -1.6988 -8.1675 -1.5379 19 8 -2.6537 -7.8596 -0.8515 20 6 -1.8169 -9.2681 -2.5170 21 6 -0.7079 -9.6194 -3.3076 22 6 -0.7896 -10.6273 -4.2146 23 6 -1.9940 -11.3320 -4.3694 24 6 -2.1303 -12.3791 -5.2984 25 6 -3.3286 -13.0204 -5.3911 26 7 -4.3660 -12.6792 -4.6391 27 6 -4.3139 -11.7105 -3.7552 28 6 -3.1213 -10.9884 -3.5771 29 6 -3.0188 -9.9452 -2.6472 30 6 1.1871 -4.7684 0.6115 31 1 -0.4850 0.8401 -0.0004 32 1 0.3557 -2.3881 -0.0002 33 1 2.3613 -3.2232 -2.1125 34 1 3.3333 -4.5947 -1.4959 35 1 1.5271 -5.7389 -2.6073 36 1 0.3233 -4.5120 -2.0914 37 1 -1.1362 -5.6329 -0.6785 38 1 -0.6164 -6.7948 0.5656 39 1 0.2293 -7.7506 -1.9539 40 1 0.2209 -9.0807 -3.1920 41 1 0.0698 -10.8860 -4.8152 42 1 -1.2998 -12.6714 -5.9238 43 1 -3.4380 -13.8274 -6.1004 44 1 -5.1858 -11.4686 -3.1658 45 1 -3.8677 -9.6720 -2.0378 46 1 0.2192 -4.3639 0.9076 47 1 1.6899 -5.2050 1.4744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086847334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:58 Heat of formation + Delta-G solvation = -3.372720 kcal Electronic energy + Delta-G solvation = -27504.119581 eV Core-core repulsion = 23650.205557 eV Total energy + Delta-G solvation = -3853.914024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94493 -40.82433 -39.48633 -37.99147 -36.35106 -35.01410 -34.00859 -32.82186 -32.12485 -30.82164 -30.15816 -28.84123 -26.45117 -25.31188 -24.95756 -24.56114 -23.21876 -22.10277 -21.13413 -20.71065 -19.36996 -19.04497 -18.75235 -17.87307 -17.19631 -16.83344 -16.66503 -16.46400 -16.13137 -15.97858 -15.66804 -15.28724 -15.11527 -14.99256 -14.76695 -14.51382 -14.48190 -14.24257 -14.20107 -13.56844 -13.16675 -13.00147 -12.93193 -12.85946 -12.45256 -12.38832 -12.31787 -12.16723 -11.95224 -11.70860 -11.61755 -11.48758 -11.39760 -11.24571 -11.12711 -10.87441 -10.51511 -10.30349 -10.07254 -9.11549 -8.95040 -7.92213 -5.19580 -0.82480 -0.33439 0.76414 1.46637 1.49467 1.49487 1.55597 2.06306 2.31420 2.57608 3.04973 3.39354 3.44417 3.49990 3.60779 3.64832 3.70304 3.80244 3.84513 3.89348 4.00479 4.05711 4.21591 4.30201 4.44797 4.55569 4.61172 4.64665 4.67655 4.70305 4.78619 4.80777 4.84165 4.89292 4.93421 4.97846 5.09827 5.16115 5.18181 5.24318 5.30072 5.33189 5.46430 5.52879 5.59489 5.61202 5.68780 5.71279 6.31133 6.48070 6.94634 7.13879 7.35704 8.16687 8.36927 9.31220 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.001751 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.435896 B =15990.872795 C =16218.970360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.734 5.734 10 C 0.160 3.840 11 H 0.044 0.956 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.083 4.083 15 H 0.113 0.887 16 C 0.132 3.868 17 N -0.704 5.704 18 C 0.551 3.449 19 O -0.583 6.583 20 C -0.146 4.146 21 C -0.074 4.074 22 C -0.107 4.107 23 C -0.024 4.024 24 C -0.153 4.153 25 C 0.070 3.930 26 N -0.516 5.516 27 C 0.147 3.853 28 C -0.136 4.136 29 C -0.026 4.026 30 C -0.117 4.117 31 H 0.249 0.751 32 H 0.370 0.630 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.416 0.584 40 H 0.159 0.841 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.178 0.822 44 H 0.180 0.820 45 H 0.141 0.859 46 H 0.049 0.951 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -30.322 -11.320 32.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.052 3.948 11 H 0.062 0.938 12 C -0.179 4.179 13 C -0.144 4.144 14 C -0.102 4.102 15 H 0.132 0.868 16 C 0.009 3.991 17 N -0.356 5.356 18 C 0.339 3.661 19 O -0.464 6.464 20 C -0.149 4.149 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.029 4.029 24 C -0.172 4.172 25 C -0.073 4.073 26 N -0.224 5.224 27 C -0.024 4.024 28 C -0.138 4.138 29 C -0.047 4.047 30 C -0.156 4.156 31 H 0.057 0.943 32 H 0.201 0.799 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.255 0.745 40 H 0.177 0.823 41 H 0.190 0.810 42 H 0.191 0.809 43 H 0.195 0.805 44 H 0.197 0.803 45 H 0.159 0.841 46 H 0.067 0.933 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.089 -30.515 -11.029 32.447 hybrid contribution 0.587 1.980 0.171 2.072 sum 0.498 -28.535 -10.857 30.535 Atomic orbital electron populations 1.69821 1.06636 1.25890 1.59959 1.25548 0.96322 1.01078 1.04274 0.85244 0.77157 0.79411 0.78166 1.20445 1.22520 1.20390 1.19625 0.91433 0.85442 1.40377 0.90635 1.42761 1.05209 1.01038 1.88442 1.21159 0.94058 0.85030 0.94558 0.93763 1.22954 0.98676 0.98315 0.97976 1.22455 0.97694 0.97296 0.96967 1.22118 0.95157 0.97567 0.95339 0.86847 1.21350 0.97242 0.88270 0.92268 1.45754 1.13728 1.34864 1.41229 1.18622 0.82675 0.82191 0.82565 1.90782 1.39332 1.68479 1.47841 1.19916 0.96434 0.98530 1.00062 1.21288 0.97768 0.96648 0.93599 1.21246 0.97279 0.95067 0.98863 1.18685 0.93887 0.95642 0.94678 1.22290 1.00469 0.95548 0.98871 1.22770 0.88493 0.99194 0.96841 1.67517 1.32765 1.15677 1.06434 1.23610 0.96371 0.89149 0.93252 1.19102 0.96431 0.98946 0.99335 1.21494 0.97330 0.91523 0.94329 1.22384 0.99735 0.95194 0.98325 0.94255 0.79864 0.94441 0.90165 0.89112 0.94180 0.93688 0.91602 0.74544 0.82317 0.80997 0.80898 0.80513 0.80265 0.84094 0.93261 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.53 13.06 21.65 0.28 -60.24 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.24 -13.13 9.96 84.03 0.84 -12.29 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.73 -36.75 5.07 -319.52 -1.62 -38.37 16 10 C 0.16 5.97 3.55 45.72 0.16 6.13 16 11 H 0.04 1.67 8.09 -2.39 -0.02 1.65 16 12 C -0.14 -4.36 6.54 31.67 0.21 -4.16 16 13 C -0.11 -2.68 6.19 31.88 0.20 -2.48 16 14 C -0.08 -1.82 2.89 -9.72 -0.03 -1.85 16 15 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 16 C 0.13 3.19 4.96 86.38 0.43 3.62 16 17 N -0.70 -13.54 5.40 -466.02 -2.51 -16.05 16 18 C 0.55 13.31 7.76 86.77 0.67 13.98 16 19 O -0.58 -19.44 16.30 -3.92 -0.06 -19.51 16 20 C -0.15 -2.70 5.87 -20.09 -0.12 -2.81 16 21 C -0.07 -0.84 9.44 22.30 0.21 -0.63 16 22 C -0.11 -1.01 9.77 22.24 0.22 -0.80 16 23 C -0.02 -0.32 5.75 -21.23 -0.12 -0.44 16 24 C -0.15 -1.51 9.87 22.39 0.22 -1.29 16 25 C 0.07 0.86 11.07 84.11 0.93 1.79 16 26 N -0.52 -8.97 10.30 -195.41 -2.01 -10.98 16 27 C 0.15 2.39 11.05 85.35 0.94 3.33 16 28 C -0.14 -2.28 5.74 -21.32 -0.12 -2.40 16 29 C -0.03 -0.48 9.37 22.81 0.21 -0.27 16 30 C -0.12 -3.49 6.14 31.32 0.19 -3.29 16 31 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.37 20.24 7.52 -92.71 -0.70 19.54 16 33 H 0.04 1.44 8.04 -2.38 -0.02 1.42 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.25 7.96 -2.39 -0.02 1.23 16 37 H 0.04 1.37 8.02 -2.39 -0.02 1.35 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.42 4.88 6.42 -92.71 -0.59 4.29 16 40 H 0.16 0.81 6.34 -2.91 -0.02 0.79 16 41 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 42 H 0.17 0.48 8.06 -2.91 -0.02 0.45 16 43 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 45 H 0.14 2.74 7.61 -2.91 -0.02 2.71 16 46 H 0.05 1.71 7.31 -2.39 -0.02 1.70 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -77.80 388.80 1.32 -76.49 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.29 Total: 28.15 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.51 Total: -8.04 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -5.87 Total: -125.64 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -77.80 1.32 -76.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086847334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.112 kcal (2) G-P(sol) polarization free energy of solvation -77.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds