Wall clock time and date at job start Tue Mar 31 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48498 * 109.46973 * 275.06888 * 3 2 1 5 5 H 1.48498 * 109.47080 * 35.06678 * 3 2 1 6 6 H 1.48498 * 109.47032 * 155.06583 * 3 2 1 7 7 C 1.38817 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00150 * 340.42243 * 7 2 1 9 9 N 1.36940 * 119.99912 * 160.41976 * 7 2 1 10 10 C 1.46920 * 120.63195 * 332.71770 * 9 7 2 11 11 C 1.53189 * 108.77668 * 233.63016 * 10 9 7 12 12 C 1.53044 * 109.33404 * 305.34552 * 11 10 9 13 13 H 1.09000 * 109.46041 * 301.35958 * 12 11 10 14 14 C 1.50706 * 109.45929 * 181.40207 * 12 11 10 15 15 C 1.38224 * 120.00215 * 128.42267 * 14 12 11 16 16 C 1.38237 * 120.00237 * 179.74859 * 15 14 12 17 17 C 1.38238 * 119.99866 * 0.51940 * 16 15 14 18 18 C 1.38235 * 119.99703 * 359.75434 * 17 16 15 19 19 C 1.38237 * 120.00151 * 359.97438 * 18 17 16 20 20 C 1.53106 * 109.50402 * 61.34789 * 12 11 10 21 21 H 1.09005 * 109.48871 * 178.69595 * 20 12 11 22 22 N 1.46502 * 109.51356 * 58.62828 * 20 12 11 23 23 C 1.34779 * 119.99554 * 149.87612 * 22 20 12 24 24 O 1.21693 * 120.00295 * 359.97438 * 23 22 20 25 25 C 1.46684 * 119.99619 * 179.97438 * 23 22 20 26 26 C 1.37870 * 126.22975 * 179.68971 * 25 23 22 27 27 C 1.39840 * 107.08214 * 179.84831 * 26 25 23 28 28 C 1.35447 * 107.86606 * 0.42002 * 27 26 25 29 29 N 1.35534 * 108.87218 * 359.74330 * 28 27 26 30 30 H 0.97002 * 125.67963 * 180.02562 * 29 28 27 31 31 C 1.46929 * 120.62990 * 152.73002 * 9 7 2 32 32 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.59493 * 113.83755 * 10 9 7 34 34 H 1.09007 * 109.58647 * 353.41403 * 10 9 7 35 35 H 1.08995 * 109.49815 * 65.30916 * 11 10 9 36 36 H 1.09001 * 109.50059 * 185.37858 * 11 10 9 37 37 H 1.08008 * 119.99965 * 359.97438 * 15 14 12 38 38 H 1.08000 * 120.00476 * 180.29851 * 16 15 14 39 39 H 1.07993 * 120.00421 * 179.77313 * 17 16 15 40 40 H 1.08001 * 119.99727 * 179.97438 * 18 17 16 41 41 H 1.07999 * 120.00238 * 179.97438 * 19 18 17 42 42 H 0.96994 * 120.00478 * 329.87813 * 22 20 12 43 43 H 1.08001 * 126.45920 * 359.96738 * 26 25 23 44 44 H 1.07997 * 126.06784 * 180.13743 * 27 26 25 45 45 H 1.08000 * 125.56721 * 179.70432 * 28 27 26 46 46 H 1.08999 * 109.59018 * 246.15761 * 31 9 7 47 47 H 1.09001 * 109.58718 * 6.44768 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3906 2.1082 -1.3946 5 1 1.5054 2.6194 0.8044 6 1 3.5972 1.4115 0.5902 7 6 2.0102 -1.2022 0.0005 8 1 1.5171 -2.1103 0.3143 9 7 3.3202 -1.2367 -0.3969 10 6 3.8401 -0.2457 -1.3488 11 6 4.5027 -0.9836 -2.5163 12 6 5.5604 -1.9466 -1.9721 13 1 6.3012 -1.3872 -1.4009 14 6 6.2381 -2.6491 -3.1204 15 6 7.6177 -2.6623 -3.2053 16 6 8.2394 -3.3111 -4.2557 17 6 7.4812 -3.9375 -5.2272 18 6 6.1014 -3.9193 -5.1454 19 6 5.4798 -3.2754 -4.0919 20 6 4.8908 -2.9811 -1.0635 21 1 5.6409 -3.6807 -0.6945 22 7 3.8718 -3.7115 -1.8215 23 6 3.5847 -4.9899 -1.5059 24 8 4.1722 -5.5377 -0.5917 25 6 2.5640 -5.7211 -2.2644 26 6 2.1744 -7.0272 -2.0569 27 6 1.1796 -7.3133 -2.9971 28 6 0.9898 -6.2047 -3.7518 29 7 1.8251 -5.2300 -3.3168 30 1 1.8909 -4.3352 -3.6855 31 6 4.2326 -2.2657 0.1204 32 1 -0.4850 0.8400 -0.0004 33 1 4.5754 0.3875 -0.8523 34 1 3.0198 0.3674 -1.7225 35 1 3.7481 -1.5454 -3.0668 36 1 4.9760 -0.2615 -3.1816 37 1 8.2100 -2.1689 -2.4488 38 1 9.3174 -3.3256 -4.3195 39 1 7.9667 -4.4412 -6.0498 40 1 5.5090 -4.4083 -5.9046 41 1 4.4018 -3.2608 -4.0281 42 1 3.4038 -3.2750 -2.5504 43 1 2.5628 -7.7016 -1.3081 44 1 0.6585 -8.2531 -3.1055 45 1 0.2880 -6.1127 -4.5675 46 1 4.9999 -1.7973 0.7367 47 1 3.6718 -2.9842 0.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087421242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:51 Heat of formation + Delta-G solvation = 67.932249 kcal Electronic energy + Delta-G solvation = -30520.267314 eV Core-core repulsion = 26669.445306 eV Total energy + Delta-G solvation = -3850.822008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15090 -40.15524 -38.62466 -37.39414 -34.39741 -33.00954 -31.63275 -31.02428 -30.92170 -30.10556 -29.50667 -28.43976 -25.36720 -23.53114 -23.11083 -22.41657 -22.01343 -21.05512 -20.51892 -19.90227 -19.07436 -18.76339 -17.02802 -16.71100 -15.77267 -15.67259 -15.37771 -15.03453 -14.92254 -14.76405 -14.07353 -13.95428 -13.75485 -13.64736 -13.49821 -13.35185 -13.13543 -12.97520 -12.77792 -12.53712 -12.30420 -12.20232 -12.00686 -11.95071 -11.75188 -11.30976 -11.07510 -10.84471 -10.69925 -10.39260 -10.04462 -9.88715 -9.75472 -9.53071 -9.01433 -8.90653 -8.89230 -8.63423 -8.54315 -8.08065 -7.03007 -6.00446 -3.37733 1.35471 1.38341 1.69392 2.88028 3.21725 3.24348 3.43481 3.44555 3.45648 3.71976 3.78900 4.45717 4.68687 4.76673 4.87414 4.95391 4.98348 5.08114 5.11985 5.18030 5.19685 5.31703 5.44998 5.46113 5.51411 5.52911 5.58132 5.72194 5.92056 5.95971 6.01077 6.06272 6.08284 6.17459 6.19012 6.27648 6.33448 6.44531 6.47262 6.49062 6.59740 6.61216 6.68330 6.79589 6.90471 6.98801 7.04008 7.45077 7.82864 7.89569 8.26971 8.51672 8.87410 9.65372 10.01091 11.15309 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008265 B = 0.005566 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.948168 B = 5029.209072 C = 7295.393721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.291 1.291 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.256 4.256 8 H 0.085 0.915 9 N -0.601 5.601 10 C 0.123 3.877 11 C -0.126 4.126 12 C -0.054 4.054 13 H 0.090 0.910 14 C -0.066 4.066 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.107 4.107 20 C 0.140 3.860 21 H 0.090 0.910 22 N -0.701 5.701 23 C 0.590 3.410 24 O -0.540 6.540 25 C -0.043 4.043 26 C -0.115 4.115 27 C -0.214 4.214 28 C 0.018 3.982 29 N -0.536 5.536 30 H 0.415 0.585 31 C 0.137 3.863 32 H 0.262 0.738 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.393 0.607 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.168 0.832 46 H 0.035 0.965 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.756 -8.231 -12.413 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.219 1.219 5 H -0.233 1.233 6 H -0.194 1.194 7 C -0.384 4.384 8 H 0.102 0.898 9 N -0.325 5.325 10 C -0.003 4.003 11 C -0.165 4.165 12 C -0.073 4.073 13 H 0.108 0.892 14 C -0.066 4.066 15 C -0.135 4.135 16 C -0.138 4.138 17 C -0.147 4.147 18 C -0.137 4.137 19 C -0.125 4.125 20 C 0.034 3.966 21 H 0.108 0.892 22 N -0.352 5.352 23 C 0.377 3.623 24 O -0.417 6.417 25 C -0.157 4.157 26 C -0.141 4.141 27 C -0.238 4.238 28 C -0.118 4.118 29 N -0.132 5.132 30 H 0.252 0.748 31 C 0.010 3.990 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.229 0.771 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.185 0.815 46 H 0.052 0.948 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.061 -8.345 -11.737 18.159 hybrid contribution 0.020 1.677 -0.620 1.788 sum 11.081 -6.668 -12.357 17.887 Atomic orbital electron populations 1.69822 1.05714 1.26484 1.53106 1.25280 0.95215 0.97476 0.99559 0.86960 0.80170 0.84732 0.76757 1.21885 1.23261 1.19396 1.18899 0.84207 0.94610 1.40733 0.89770 1.44320 1.08120 1.32136 1.47924 1.21400 0.97224 0.92072 0.89574 1.22116 0.97034 0.98171 0.99215 1.20462 0.97355 0.95637 0.93858 0.89155 1.19945 0.93504 0.97327 0.95792 1.21070 0.93994 0.99976 0.98468 1.21094 0.99599 0.98205 0.94870 1.21069 0.94043 1.00395 0.99195 1.21100 0.94839 0.99561 0.98225 1.20962 0.99287 0.97960 0.94281 1.21517 0.89770 0.92704 0.92593 0.89220 1.45852 1.40909 1.11960 1.36474 1.16998 0.81245 0.81184 0.82875 1.90796 1.52011 1.68681 1.30239 1.20547 1.02348 0.96152 0.96647 1.21258 0.98548 0.93725 1.00613 1.20835 1.03545 0.99250 1.00219 1.21971 0.98279 0.89013 1.02567 1.42049 1.30831 1.13590 1.26686 0.74774 1.21365 0.93345 0.91573 0.92723 0.92794 0.95224 0.90788 0.92271 0.91970 0.86124 0.86367 0.86515 0.86493 0.87036 0.77101 0.83789 0.84219 0.81493 0.94769 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.08 13.97 55.49 0.78 -26.31 16 2 C 0.02 0.65 5.25 -17.43 -0.09 0.56 16 3 Si 0.88 21.58 24.34 -169.99 -4.14 17.44 16 4 H -0.29 -6.83 6.71 56.52 0.38 -6.45 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.42 6.38 56.52 0.36 -6.06 16 7 C -0.26 -6.83 10.05 -15.06 -0.15 -6.98 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.60 -13.19 2.69 -172.32 -0.46 -13.66 16 10 C 0.12 2.42 4.18 -3.72 -0.02 2.41 16 11 C -0.13 -1.93 4.87 -26.61 -0.13 -2.06 16 12 C -0.05 -0.76 2.21 -91.69 -0.20 -0.96 16 13 H 0.09 1.20 7.90 -51.93 -0.41 0.79 16 14 C -0.07 -0.85 4.79 -104.62 -0.50 -1.35 16 15 C -0.12 -1.38 9.67 -39.59 -0.38 -1.76 16 16 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 17 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 18 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 19 C -0.11 -1.32 8.19 -39.58 -0.32 -1.65 16 20 C 0.14 2.27 2.31 -67.78 -0.16 2.11 16 21 H 0.09 1.49 7.42 -51.93 -0.39 1.11 16 22 N -0.70 -11.15 3.51 -54.96 -0.19 -11.34 16 23 C 0.59 10.37 7.79 -12.85 -0.10 10.27 16 24 O -0.54 -11.08 16.46 5.19 0.09 -10.99 16 25 C -0.04 -0.68 7.06 -81.98 -0.58 -1.26 16 26 C -0.11 -1.71 10.65 -39.12 -0.42 -2.12 16 27 C -0.21 -2.62 10.81 -39.98 -0.43 -3.05 16 28 C 0.02 0.20 11.89 -16.91 -0.20 0.00 16 29 N -0.54 -6.69 5.99 -9.39 -0.06 -6.74 16 30 H 0.42 4.40 8.19 -40.82 -0.33 4.07 16 31 C 0.14 2.64 6.15 -3.71 -0.02 2.62 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.03 0.58 6.94 -51.93 -0.36 0.22 16 34 H 0.07 1.62 4.46 -51.92 -0.23 1.39 16 35 H 0.06 0.89 5.50 -51.93 -0.29 0.61 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.12 1.23 7.96 -52.48 -0.42 0.81 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.11 1.32 5.11 -52.49 -0.27 1.05 16 42 H 0.39 5.81 4.25 -40.82 -0.17 5.64 16 43 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 44 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 1.54 7.93 -51.93 -0.41 1.13 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -32.74 369.82 -9.60 -42.34 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.28 Total: 12.10 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -4.90 Total: -8.41 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.06 Total: -58.05 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.74 -9.60 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087421242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.274 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds