Wall clock time and date at job start Tue Mar 31 2020 22:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48498 * 109.46973 * 275.06888 * 3 2 1 5 5 H 1.48498 * 109.47080 * 35.06678 * 3 2 1 6 6 H 1.48498 * 109.47032 * 155.06583 * 3 2 1 7 7 C 1.38817 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00150 * 340.42243 * 7 2 1 9 9 N 1.36940 * 119.99912 * 160.41976 * 7 2 1 10 10 C 1.46920 * 120.63195 * 332.71770 * 9 7 2 11 11 C 1.53189 * 108.77668 * 233.63016 * 10 9 7 12 12 C 1.53044 * 109.33404 * 305.34552 * 11 10 9 13 13 H 1.09000 * 109.46041 * 301.35958 * 12 11 10 14 14 C 1.50706 * 109.45929 * 181.40207 * 12 11 10 15 15 C 1.38224 * 120.00215 * 128.42267 * 14 12 11 16 16 C 1.38237 * 120.00237 * 179.74859 * 15 14 12 17 17 C 1.38238 * 119.99866 * 0.51940 * 16 15 14 18 18 C 1.38235 * 119.99703 * 359.75434 * 17 16 15 19 19 C 1.38237 * 120.00151 * 359.97438 * 18 17 16 20 20 C 1.53106 * 109.50402 * 61.34789 * 12 11 10 21 21 H 1.09005 * 109.48871 * 178.69595 * 20 12 11 22 22 N 1.46502 * 109.51356 * 58.62828 * 20 12 11 23 23 C 1.34779 * 119.99554 * 149.87612 * 22 20 12 24 24 O 1.21693 * 120.00295 * 359.97438 * 23 22 20 25 25 C 1.46684 * 119.99619 * 179.97438 * 23 22 20 26 26 C 1.37870 * 126.22975 * 179.68971 * 25 23 22 27 27 C 1.39840 * 107.08214 * 179.84831 * 26 25 23 28 28 C 1.35447 * 107.86606 * 0.42002 * 27 26 25 29 29 N 1.35534 * 108.87218 * 359.74330 * 28 27 26 30 30 H 0.97002 * 125.67963 * 180.02562 * 29 28 27 31 31 C 1.46929 * 120.62990 * 152.73002 * 9 7 2 32 32 H 0.97000 * 120.00023 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.59493 * 113.83755 * 10 9 7 34 34 H 1.09007 * 109.58647 * 353.41403 * 10 9 7 35 35 H 1.08995 * 109.49815 * 65.30916 * 11 10 9 36 36 H 1.09001 * 109.50059 * 185.37858 * 11 10 9 37 37 H 1.08008 * 119.99965 * 359.97438 * 15 14 12 38 38 H 1.08000 * 120.00476 * 180.29851 * 16 15 14 39 39 H 1.07993 * 120.00421 * 179.77313 * 17 16 15 40 40 H 1.08001 * 119.99727 * 179.97438 * 18 17 16 41 41 H 1.07999 * 120.00238 * 179.97438 * 19 18 17 42 42 H 0.96994 * 120.00478 * 329.87813 * 22 20 12 43 43 H 1.08001 * 126.45920 * 359.96738 * 26 25 23 44 44 H 1.07997 * 126.06784 * 180.13743 * 27 26 25 45 45 H 1.08000 * 125.56721 * 179.70432 * 28 27 26 46 46 H 1.08999 * 109.59018 * 246.15761 * 31 9 7 47 47 H 1.09001 * 109.58718 * 6.44768 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3906 2.1082 -1.3946 5 1 1.5054 2.6194 0.8044 6 1 3.5972 1.4115 0.5902 7 6 2.0102 -1.2022 0.0005 8 1 1.5171 -2.1103 0.3143 9 7 3.3202 -1.2367 -0.3969 10 6 3.8401 -0.2457 -1.3488 11 6 4.5027 -0.9836 -2.5163 12 6 5.5604 -1.9466 -1.9721 13 1 6.3012 -1.3872 -1.4009 14 6 6.2381 -2.6491 -3.1204 15 6 7.6177 -2.6623 -3.2053 16 6 8.2394 -3.3111 -4.2557 17 6 7.4812 -3.9375 -5.2272 18 6 6.1014 -3.9193 -5.1454 19 6 5.4798 -3.2754 -4.0919 20 6 4.8908 -2.9811 -1.0635 21 1 5.6409 -3.6807 -0.6945 22 7 3.8718 -3.7115 -1.8215 23 6 3.5847 -4.9899 -1.5059 24 8 4.1722 -5.5377 -0.5917 25 6 2.5640 -5.7211 -2.2644 26 6 2.1744 -7.0272 -2.0569 27 6 1.1796 -7.3133 -2.9971 28 6 0.9898 -6.2047 -3.7518 29 7 1.8251 -5.2300 -3.3168 30 1 1.8909 -4.3352 -3.6855 31 6 4.2326 -2.2657 0.1204 32 1 -0.4850 0.8400 -0.0004 33 1 4.5754 0.3875 -0.8523 34 1 3.0198 0.3674 -1.7225 35 1 3.7481 -1.5454 -3.0668 36 1 4.9760 -0.2615 -3.1816 37 1 8.2100 -2.1689 -2.4488 38 1 9.3174 -3.3256 -4.3195 39 1 7.9667 -4.4412 -6.0498 40 1 5.5090 -4.4083 -5.9046 41 1 4.4018 -3.2608 -4.0281 42 1 3.4038 -3.2750 -2.5504 43 1 2.5628 -7.7016 -1.3081 44 1 0.6585 -8.2531 -3.1055 45 1 0.2880 -6.1127 -4.5675 46 1 4.9999 -1.7973 0.7367 47 1 3.6718 -2.9842 0.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087421242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:50 Heat of formation + Delta-G solvation = 47.868895 kcal Electronic energy + Delta-G solvation = -30521.137326 eV Core-core repulsion = 26669.445306 eV Total energy + Delta-G solvation = -3851.692020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.26338 -41.29040 -39.74517 -38.79636 -35.99616 -34.35311 -33.46062 -32.10827 -31.83764 -31.38783 -30.74085 -29.63936 -27.00505 -24.87265 -24.29960 -23.87305 -23.10421 -22.22310 -21.53314 -21.01805 -20.52641 -19.91942 -18.73868 -17.86035 -17.17824 -17.00374 -16.79663 -16.32474 -16.08057 -15.79213 -15.53585 -15.25597 -15.16123 -14.95377 -14.65526 -14.43495 -14.39772 -14.22652 -14.15788 -13.72979 -13.58009 -13.50288 -13.34393 -13.26495 -13.12095 -12.60923 -12.48689 -12.20473 -12.10931 -11.83433 -11.58640 -11.47268 -11.38842 -11.14018 -10.80460 -10.15906 -9.94005 -9.76011 -9.55819 -9.17220 -8.88084 -8.15930 -5.49140 0.47596 0.51480 0.55110 1.29063 1.43379 1.51131 1.87405 2.12804 2.27265 2.40594 2.44687 2.90206 3.06642 3.26321 3.67284 3.72952 3.79514 3.99088 4.09788 4.17465 4.24262 4.28126 4.32511 4.37780 4.44153 4.48113 4.52723 4.60482 4.63280 4.68262 4.78800 4.86909 4.93003 4.96881 5.00232 5.12768 5.15789 5.19071 5.25229 5.28625 5.48126 5.61003 5.65382 5.75440 5.78935 5.84929 5.96283 6.11003 6.15377 6.46396 6.59939 6.89845 7.17566 7.60533 7.99312 9.03887 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008265 B = 0.005566 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.948168 B = 5029.209072 C = 7295.393721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.032 4.032 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.318 1.318 6 H -0.257 1.257 7 C -0.239 4.239 8 H 0.038 0.962 9 N -0.609 5.609 10 C 0.118 3.882 11 C -0.116 4.116 12 C -0.042 4.042 13 H 0.104 0.896 14 C -0.081 4.081 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.119 4.119 20 C 0.148 3.852 21 H 0.086 0.914 22 N -0.692 5.692 23 C 0.584 3.416 24 O -0.581 6.581 25 C -0.081 4.081 26 C -0.129 4.129 27 C -0.224 4.224 28 C 0.039 3.961 29 N -0.531 5.531 30 H 0.423 0.577 31 C 0.137 3.863 32 H 0.260 0.740 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.398 0.602 43 H 0.136 0.864 44 H 0.166 0.834 45 H 0.212 0.788 46 H 0.050 0.950 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.735 -7.839 -15.289 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.227 4.227 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.248 1.248 6 H -0.181 1.181 7 C -0.369 4.369 8 H 0.056 0.944 9 N -0.333 5.333 10 C -0.007 4.007 11 C -0.155 4.155 12 C -0.061 4.061 13 H 0.122 0.878 14 C -0.081 4.081 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.138 4.138 20 C 0.042 3.958 21 H 0.104 0.896 22 N -0.343 5.343 23 C 0.373 3.627 24 O -0.462 6.462 25 C -0.194 4.194 26 C -0.156 4.156 27 C -0.248 4.248 28 C -0.097 4.097 29 N -0.127 5.127 30 H 0.261 0.739 31 C 0.011 3.989 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.128 0.872 42 H 0.236 0.764 43 H 0.154 0.846 44 H 0.183 0.817 45 H 0.228 0.772 46 H 0.068 0.932 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.091 -7.940 -14.655 21.194 hybrid contribution -0.624 1.388 0.237 1.541 sum 12.467 -6.551 -14.418 20.155 Atomic orbital electron populations 1.69963 1.07513 1.27115 1.55816 1.25876 0.95773 1.00830 1.00228 0.85884 0.78863 0.79903 0.77471 1.19781 1.24785 1.18128 1.18660 0.86040 0.92883 1.39323 0.94397 1.44302 1.06830 1.33215 1.48965 1.21486 0.96882 0.91843 0.90462 1.21988 0.97272 0.98563 0.97645 1.20324 0.97030 0.94637 0.94071 0.87772 1.19812 0.94154 0.98523 0.95623 1.21302 0.93602 1.00069 0.99203 1.21426 1.00975 0.97456 0.94315 1.21431 0.93900 0.99781 0.99717 1.21355 0.95575 0.99419 0.98275 1.21063 0.99362 0.98490 0.94852 1.21363 0.89422 0.92908 0.92117 0.89629 1.45783 1.40694 1.11532 1.36258 1.17363 0.81268 0.81516 0.82527 1.90751 1.53755 1.69597 1.32117 1.20333 1.03730 0.96696 0.98646 1.21485 0.99391 0.93588 1.01151 1.21185 1.03071 1.00896 0.99634 1.22735 0.97013 0.87744 1.02241 1.42073 1.30482 1.14307 1.25814 0.73853 1.21411 0.92862 0.90582 0.94086 0.93059 0.94150 0.92783 0.92294 0.89370 0.84714 0.84004 0.84202 0.84941 0.87239 0.76425 0.84610 0.81690 0.77160 0.93189 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.12 13.97 21.65 0.30 -58.82 16 2 C -0.03 -1.84 5.25 84.86 0.45 -1.40 16 3 Si 0.95 44.91 24.34 68.60 1.67 46.57 16 4 H -0.27 -11.87 6.71 99.48 0.67 -11.20 16 5 H -0.32 -15.71 7.11 99.48 0.71 -15.01 16 6 H -0.26 -11.51 6.38 99.48 0.63 -10.87 16 7 C -0.24 -13.24 10.05 84.03 0.84 -12.40 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 9 N -0.61 -26.91 2.69 -699.09 -1.88 -28.79 16 10 C 0.12 4.44 4.18 86.36 0.36 4.80 16 11 C -0.12 -3.29 4.87 30.67 0.15 -3.14 16 12 C -0.04 -1.09 2.21 -11.49 -0.03 -1.12 16 13 H 0.10 2.47 7.90 -2.39 -0.02 2.45 16 14 C -0.08 -1.91 4.79 -19.87 -0.10 -2.01 16 15 C -0.12 -2.56 9.67 22.27 0.22 -2.34 16 16 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 17 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 18 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 19 C -0.12 -2.74 8.19 22.27 0.18 -2.56 16 20 C 0.15 4.79 2.31 45.09 0.10 4.90 16 21 H 0.09 2.89 7.42 -2.38 -0.02 2.87 16 22 N -0.69 -22.50 3.51 -446.01 -1.57 -24.06 16 23 C 0.58 21.47 7.79 86.45 0.67 22.14 16 24 O -0.58 -25.25 16.46 -4.33 -0.07 -25.32 16 25 C -0.08 -2.58 7.06 40.35 0.28 -2.30 16 26 C -0.13 -3.89 10.65 22.57 0.24 -3.65 16 27 C -0.22 -5.13 10.81 22.01 0.24 -4.89 16 28 C 0.04 0.77 11.89 83.48 0.99 1.77 16 29 N -0.53 -12.76 5.99 -183.62 -1.10 -13.87 16 30 H 0.42 8.57 8.19 -92.71 -0.76 7.81 16 31 C 0.14 5.39 6.15 86.36 0.53 5.93 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.04 1.46 6.94 -2.39 -0.02 1.45 16 34 H 0.05 2.27 4.46 -2.38 -0.01 2.26 16 35 H 0.06 1.68 5.50 -2.39 -0.01 1.67 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.13 2.32 7.96 -2.91 -0.02 2.30 16 38 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 40 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.11 2.46 5.11 -2.91 -0.01 2.44 16 42 H 0.40 11.86 4.25 -92.71 -0.39 11.47 16 43 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 44 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.04 1.74 7.93 -2.39 -0.02 1.72 16 Total: -1.00 -74.89 369.82 2.91 -71.98 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.25 Total: 35.07 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.81 Total: -2.76 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -4.25 Total: -125.54 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.07 Total: -25.32 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.57 kcal Total: -74.89 2.91 -71.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087421242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.846 kcal (2) G-P(sol) polarization free energy of solvation -74.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds