Wall clock time and date at job start Tue Mar 31 2020 22:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48494 * 109.46779 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47076 * 299.99625 * 3 2 1 6 6 H 1.48509 * 109.46849 * 59.99896 * 3 2 1 7 7 C 1.38809 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99801 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00275 * 179.97438 * 9 7 2 11 11 C 1.53772 * 113.61745 * 204.99935 * 10 9 7 12 12 C 1.53774 * 87.08320 * 219.93339 * 11 10 9 13 13 C 1.53002 * 113.61618 * 139.97788 * 12 11 10 14 14 N 1.46506 * 109.47035 * 176.52887 * 13 12 11 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 12 16 16 O 1.21579 * 119.99978 * 0.02562 * 15 14 13 17 17 C 1.47636 * 120.00079 * 179.97438 * 15 14 13 18 18 C 1.39719 * 120.07826 * 359.73611 * 17 15 14 19 19 C 1.37718 * 119.91851 * 179.74102 * 18 17 15 20 20 C 1.39050 * 120.07914 * 0.52603 * 19 18 17 21 21 N 1.39805 * 119.92226 * 179.70497 * 20 19 18 22 22 C 1.36640 * 125.68103 * 179.71799 * 21 20 19 23 23 C 1.34807 * 108.19504 * 179.82919 * 22 21 20 24 24 C 1.40989 * 107.48231 * 0.41820 * 23 22 21 25 25 C 1.34810 * 107.48262 * 359.74144 * 24 23 22 26 26 C 1.39058 * 120.16105 * 359.72095 * 20 19 18 27 27 C 1.37711 * 120.07795 * 0.02562 * 26 20 19 28 28 C 1.53784 * 87.17212 * 25.39034 * 12 11 10 29 29 H 0.97003 * 120.00060 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00077 * 359.97438 * 9 7 2 31 31 H 1.09001 * 112.84520 * 336.19527 * 10 9 7 32 32 H 1.09001 * 113.61872 * 105.37999 * 11 10 9 33 33 H 1.09004 * 113.61309 * 334.48177 * 11 10 9 34 34 H 1.08999 * 113.61920 * 270.79910 * 12 11 10 35 35 H 1.09004 * 109.46930 * 56.53117 * 13 12 11 36 36 H 1.09000 * 109.47312 * 296.53061 * 13 12 11 37 37 H 0.96999 * 120.00080 * 0.02562 * 14 13 12 38 38 H 1.08006 * 120.04000 * 359.97438 * 18 17 15 39 39 H 1.07997 * 119.95650 * 180.25275 * 19 18 17 40 40 H 1.08003 * 125.89828 * 359.97438 * 22 21 20 41 41 H 1.08000 * 126.26166 * 180.15872 * 23 22 21 42 42 H 1.07998 * 126.25480 * 179.73130 * 24 23 22 43 43 H 1.08001 * 125.90388 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.96207 * 180.02562 * 26 20 19 45 45 H 1.08002 * 120.04228 * 179.97438 * 27 26 20 46 46 H 1.08998 * 113.61528 * 89.16153 * 28 12 11 47 47 H 1.09002 * 113.61529 * 220.06258 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.2601 -4.8288 -0.5949 12 6 1.8497 -5.6981 0.5282 13 6 0.8478 -6.6867 1.1282 14 7 1.5225 -7.5207 2.1259 15 6 0.8320 -8.4690 2.7896 16 8 -0.3506 -8.6326 2.5600 17 6 1.5121 -9.3099 3.7946 18 6 2.8726 -9.1278 4.0551 19 6 3.5024 -9.9105 4.9971 20 6 2.7885 -10.8883 5.6808 21 7 3.4326 -11.6852 6.6321 22 6 2.8467 -12.6723 7.3732 23 6 3.7877 -13.2132 8.1728 24 6 4.9967 -12.5313 7.9252 25 6 4.7515 -11.6025 6.9794 26 6 1.4354 -11.0759 5.4205 27 6 0.7979 -10.2935 4.4837 28 6 2.0030 -4.4043 1.3453 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.0655 -3.5638 -0.4049 32 1 1.5906 -5.1202 -1.5919 33 1 0.1798 -4.7009 -0.5266 34 1 2.7995 -6.1644 0.2666 35 1 0.4446 -7.3200 0.3379 36 1 0.0353 -6.1372 1.6035 37 1 2.4660 -7.3900 2.3094 38 1 3.4289 -8.3716 3.5210 39 1 4.5531 -9.7674 5.2019 40 1 1.8095 -12.9695 7.3250 41 1 3.6413 -14.0184 8.8774 42 1 5.9456 -12.7187 8.4057 43 1 5.4728 -10.9122 6.5676 44 1 0.8839 -11.8361 5.9538 45 1 -0.2530 -10.4400 4.2816 46 1 1.1262 -4.1602 1.9450 47 1 2.9324 -4.3536 1.9124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091125743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:55 Heat of formation + Delta-G solvation = 77.513081 kcal Electronic energy + Delta-G solvation = -26961.521366 eV Core-core repulsion = 23111.114814 eV Total energy + Delta-G solvation = -3850.406552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.10123 -40.36052 -38.90621 -38.17864 -34.85051 -33.74743 -33.28138 -31.82895 -30.43186 -29.61379 -29.29387 -27.27645 -25.13470 -24.41111 -23.76676 -23.36726 -21.37059 -21.13320 -20.39168 -20.24498 -19.24894 -19.03846 -17.88193 -17.05858 -16.38299 -15.62297 -15.54753 -15.38294 -15.23984 -15.10464 -14.69464 -14.57026 -14.33133 -13.95618 -13.82410 -13.51667 -13.48576 -13.03164 -12.94531 -12.77009 -12.74360 -12.47078 -11.95220 -11.86323 -11.62807 -11.43413 -11.26647 -10.87879 -10.56784 -10.34899 -10.31856 -10.14720 -9.98671 -9.86468 -9.65825 -9.53210 -9.13533 -8.90033 -8.72600 -8.47719 -6.98990 -5.80852 -3.09846 0.09856 0.75946 1.79351 2.32675 2.55168 2.67983 2.99627 3.40569 3.44795 3.46070 3.48516 4.05671 4.18343 4.39899 4.49726 4.55876 4.61586 4.68784 4.73721 4.91474 4.93574 4.98705 5.09222 5.18527 5.21410 5.37259 5.43770 5.46051 5.50636 5.59936 5.76029 5.77643 5.78129 5.83883 5.86169 5.90758 6.05934 6.11409 6.20206 6.27289 6.31831 6.39187 6.43660 6.55094 6.70254 6.78603 6.93197 7.07575 7.34557 7.67019 8.04083 8.37623 9.48821 10.06978 10.41061 11.41530 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.001645 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.777943 B =17013.783541 C =17880.802284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.719 5.719 15 C 0.555 3.445 16 O -0.538 6.538 17 C -0.145 4.145 18 C -0.055 4.055 19 C -0.149 4.149 20 C 0.164 3.836 21 N -0.400 5.400 22 C -0.015 4.015 23 C -0.188 4.188 24 C -0.188 4.188 25 C -0.015 4.015 26 C -0.150 4.150 27 C -0.029 4.029 28 C -0.162 4.162 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.399 0.601 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.167 0.833 44 H 0.137 0.863 45 H 0.146 0.854 46 H 0.078 0.922 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.568 -27.921 12.756 31.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.147 4.147 13 C 0.009 3.991 14 N -0.370 5.370 15 C 0.342 3.658 16 O -0.416 6.416 17 C -0.149 4.149 18 C -0.074 4.074 19 C -0.168 4.168 20 C 0.071 3.929 21 N -0.072 5.072 22 C -0.141 4.141 23 C -0.212 4.212 24 C -0.212 4.212 25 C -0.141 4.141 26 C -0.170 4.170 27 C -0.049 4.049 28 C -0.203 4.203 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.234 0.766 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.184 0.816 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.184 0.816 44 H 0.155 0.845 45 H 0.164 0.836 46 H 0.097 0.903 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.706 -27.666 12.359 31.266 hybrid contribution 0.668 0.950 0.239 1.186 sum 8.374 -26.716 12.599 30.701 Atomic orbital electron populations 1.69671 1.05146 1.25659 1.57457 1.24773 0.95522 0.97806 1.02803 0.86120 0.78775 0.84091 0.77210 1.20537 1.21824 1.21852 1.19349 0.91104 0.84242 1.42909 0.91034 1.42415 1.05781 0.99887 1.86951 1.21546 0.95319 0.85059 0.92717 1.23441 1.01082 0.96948 0.96687 1.22648 0.98372 0.94395 0.99306 1.21495 0.95489 0.91973 0.90186 1.45970 1.13779 1.35965 1.41250 1.18122 0.86537 0.80195 0.80931 1.90796 1.15240 1.69526 1.66056 1.20063 0.94309 0.99919 1.00597 1.21191 0.93336 0.97417 0.95462 1.20736 1.00727 0.96782 0.98574 1.18086 0.92369 0.92097 0.90381 1.41661 1.08862 1.27184 1.29462 1.21970 0.99739 0.94248 0.98111 1.21052 0.93104 1.03609 1.03470 1.21055 0.99238 0.99369 1.01566 1.21974 0.84834 1.04586 1.02662 1.20797 0.92321 1.02653 1.01195 1.21144 1.00686 0.91328 0.91717 1.23985 1.01352 0.94952 0.99990 0.93479 0.78056 0.90679 0.91941 0.90053 0.89377 0.91510 0.90955 0.76585 0.84496 0.84525 0.81624 0.84030 0.84015 0.81594 0.84526 0.83589 0.90319 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.53 5.41 -52.55 -0.28 -17.82 16 10 C 0.17 3.12 4.48 -67.03 -0.30 2.82 16 11 C -0.14 -2.18 7.39 -25.93 -0.19 -2.37 16 12 C -0.13 -1.62 3.75 -89.81 -0.34 -1.95 16 13 C 0.13 1.65 5.50 -4.04 -0.02 1.63 16 14 N -0.72 -7.75 5.51 -61.31 -0.34 -8.08 16 15 C 0.56 6.86 7.77 -12.42 -0.10 6.76 16 16 O -0.54 -8.64 16.34 5.30 0.09 -8.56 16 17 C -0.15 -1.41 5.88 -104.95 -0.62 -2.03 16 18 C -0.05 -0.40 9.53 -39.22 -0.37 -0.78 16 19 C -0.15 -1.05 9.43 -39.47 -0.37 -1.42 16 20 C 0.16 1.32 6.62 -83.62 -0.55 0.77 16 21 N -0.40 -3.22 2.97 -60.90 -0.18 -3.40 16 22 C -0.01 -0.11 10.73 -16.63 -0.18 -0.29 16 23 C -0.19 -1.36 10.86 -39.76 -0.43 -1.80 16 24 C -0.19 -1.37 10.86 -39.76 -0.43 -1.80 16 25 C -0.01 -0.11 10.73 -16.63 -0.18 -0.29 16 26 C -0.15 -1.15 9.43 -39.47 -0.37 -1.52 16 27 C -0.03 -0.26 9.58 -39.22 -0.38 -0.64 16 28 C -0.16 -2.56 7.45 -25.83 -0.19 -2.75 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 10.13 7.92 -40.82 -0.32 9.81 16 31 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 37 H 0.40 3.22 6.49 -40.82 -0.27 2.96 16 38 H 0.14 0.70 6.39 -52.48 -0.34 0.36 16 39 H 0.14 0.68 6.68 -52.49 -0.35 0.33 16 40 H 0.17 0.82 6.99 -52.48 -0.37 0.45 16 41 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.17 0.81 6.99 -52.49 -0.37 0.44 16 44 H 0.14 0.76 6.68 -52.49 -0.35 0.41 16 45 H 0.15 1.30 7.64 -52.49 -0.40 0.90 16 46 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -33.72 392.17 -10.88 -44.60 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.50 Total: 10.47 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -5.27 Total: -12.98 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.08 Total: -56.56 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.72 -10.88 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091125743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.109 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds