Wall clock time and date at job start Tue Mar 31 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48494 * 109.46779 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47076 * 299.99625 * 3 2 1 6 6 H 1.48509 * 109.46849 * 59.99896 * 3 2 1 7 7 C 1.38809 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99801 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00275 * 179.97438 * 9 7 2 11 11 C 1.53772 * 113.61745 * 204.99935 * 10 9 7 12 12 C 1.53774 * 87.08320 * 219.93339 * 11 10 9 13 13 C 1.53002 * 113.61618 * 139.97788 * 12 11 10 14 14 N 1.46506 * 109.47035 * 176.52887 * 13 12 11 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 12 16 16 O 1.21579 * 119.99978 * 0.02562 * 15 14 13 17 17 C 1.47636 * 120.00079 * 179.97438 * 15 14 13 18 18 C 1.39719 * 120.07826 * 359.73611 * 17 15 14 19 19 C 1.37718 * 119.91851 * 179.74102 * 18 17 15 20 20 C 1.39050 * 120.07914 * 0.52603 * 19 18 17 21 21 N 1.39805 * 119.92226 * 179.70497 * 20 19 18 22 22 C 1.36640 * 125.68103 * 179.71799 * 21 20 19 23 23 C 1.34807 * 108.19504 * 179.82919 * 22 21 20 24 24 C 1.40989 * 107.48231 * 0.41820 * 23 22 21 25 25 C 1.34810 * 107.48262 * 359.74144 * 24 23 22 26 26 C 1.39058 * 120.16105 * 359.72095 * 20 19 18 27 27 C 1.37711 * 120.07795 * 0.02562 * 26 20 19 28 28 C 1.53784 * 87.17212 * 25.39034 * 12 11 10 29 29 H 0.97003 * 120.00060 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00077 * 359.97438 * 9 7 2 31 31 H 1.09001 * 112.84520 * 336.19527 * 10 9 7 32 32 H 1.09001 * 113.61872 * 105.37999 * 11 10 9 33 33 H 1.09004 * 113.61309 * 334.48177 * 11 10 9 34 34 H 1.08999 * 113.61920 * 270.79910 * 12 11 10 35 35 H 1.09004 * 109.46930 * 56.53117 * 13 12 11 36 36 H 1.09000 * 109.47312 * 296.53061 * 13 12 11 37 37 H 0.96999 * 120.00080 * 0.02562 * 14 13 12 38 38 H 1.08006 * 120.04000 * 359.97438 * 18 17 15 39 39 H 1.07997 * 119.95650 * 180.25275 * 19 18 17 40 40 H 1.08003 * 125.89828 * 359.97438 * 22 21 20 41 41 H 1.08000 * 126.26166 * 180.15872 * 23 22 21 42 42 H 1.07998 * 126.25480 * 179.73130 * 24 23 22 43 43 H 1.08001 * 125.90388 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.96207 * 180.02562 * 26 20 19 45 45 H 1.08002 * 120.04228 * 179.97438 * 27 26 20 46 46 H 1.08998 * 113.61528 * 89.16153 * 28 12 11 47 47 H 1.09002 * 113.61529 * 220.06258 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.2601 -4.8288 -0.5949 12 6 1.8497 -5.6981 0.5282 13 6 0.8478 -6.6867 1.1282 14 7 1.5225 -7.5207 2.1259 15 6 0.8320 -8.4690 2.7896 16 8 -0.3506 -8.6326 2.5600 17 6 1.5121 -9.3099 3.7946 18 6 2.8726 -9.1278 4.0551 19 6 3.5024 -9.9105 4.9971 20 6 2.7885 -10.8883 5.6808 21 7 3.4326 -11.6852 6.6321 22 6 2.8467 -12.6723 7.3732 23 6 3.7877 -13.2132 8.1728 24 6 4.9967 -12.5313 7.9252 25 6 4.7515 -11.6025 6.9794 26 6 1.4354 -11.0759 5.4205 27 6 0.7979 -10.2935 4.4837 28 6 2.0030 -4.4043 1.3453 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.0655 -3.5638 -0.4049 32 1 1.5906 -5.1202 -1.5919 33 1 0.1798 -4.7009 -0.5266 34 1 2.7995 -6.1644 0.2666 35 1 0.4446 -7.3200 0.3379 36 1 0.0353 -6.1372 1.6035 37 1 2.4660 -7.3900 2.3094 38 1 3.4289 -8.3716 3.5210 39 1 4.5531 -9.7674 5.2019 40 1 1.8095 -12.9695 7.3250 41 1 3.6413 -14.0184 8.8774 42 1 5.9456 -12.7187 8.4057 43 1 5.4728 -10.9122 6.5676 44 1 0.8839 -11.8361 5.9538 45 1 -0.2530 -10.4400 4.2816 46 1 1.1262 -4.1602 1.9450 47 1 2.9324 -4.3536 1.9124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091125743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:54 Heat of formation + Delta-G solvation = 58.146582 kcal Electronic energy + Delta-G solvation = -26962.361160 eV Core-core repulsion = 23111.114814 eV Total energy + Delta-G solvation = -3851.246346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.62487 -41.23123 -40.00107 -39.10427 -36.11931 -35.11137 -34.24365 -32.48460 -32.12901 -30.44019 -29.79790 -28.42263 -26.44820 -25.91744 -24.79803 -24.02022 -22.49677 -22.10098 -20.95572 -20.92027 -20.46739 -19.69818 -19.08280 -18.63274 -17.34224 -16.76240 -16.53143 -16.17227 -16.05366 -15.93854 -15.82560 -15.70266 -15.21164 -15.01306 -14.86943 -14.57603 -14.43673 -14.28229 -13.62102 -13.53156 -13.38133 -13.22588 -13.22382 -13.03353 -12.96926 -12.91706 -12.66645 -12.18617 -12.16036 -12.05225 -11.62021 -11.54704 -11.16979 -10.96612 -10.93008 -10.80567 -10.22768 -10.13676 -9.23540 -9.06203 -8.96908 -7.94325 -5.22505 -0.54531 0.19350 1.18515 1.47787 1.48315 1.58366 1.80143 1.91961 2.04218 2.10022 2.57039 2.76183 3.37886 3.52127 3.59747 3.68125 3.75945 3.76358 3.93254 3.99482 4.08774 4.16825 4.26727 4.26932 4.36249 4.41566 4.45642 4.56666 4.57724 4.70984 4.76640 4.84363 4.97217 4.98016 5.00052 5.02646 5.06515 5.20196 5.23041 5.30573 5.33543 5.34833 5.42386 5.53342 5.55139 5.74496 5.93896 6.19029 6.28213 6.41499 6.49547 7.15114 7.33659 8.12508 8.33730 9.29433 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.001645 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.777943 B =17013.783541 C =17880.802284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.730 5.730 10 C 0.142 3.858 11 C -0.137 4.137 12 C -0.095 4.095 13 C 0.137 3.863 14 N -0.706 5.706 15 C 0.553 3.447 16 O -0.585 6.585 17 C -0.164 4.164 18 C -0.046 4.046 19 C -0.148 4.148 20 C 0.159 3.841 21 N -0.408 5.408 22 C -0.030 4.030 23 C -0.201 4.201 24 C -0.202 4.202 25 C -0.026 4.026 26 C -0.151 4.151 27 C -0.039 4.039 28 C -0.154 4.154 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.415 0.585 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.183 0.817 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.189 0.811 44 H 0.153 0.847 45 H 0.138 0.862 46 H 0.054 0.946 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.616 -29.288 13.307 34.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.033 3.967 11 C -0.177 4.177 12 C -0.114 4.114 13 C 0.013 3.987 14 N -0.358 5.358 15 C 0.342 3.658 16 O -0.467 6.467 17 C -0.167 4.167 18 C -0.065 4.065 19 C -0.167 4.167 20 C 0.065 3.935 21 N -0.080 5.080 22 C -0.156 4.156 23 C -0.224 4.224 24 C -0.226 4.226 25 C -0.151 4.151 26 C -0.171 4.171 27 C -0.059 4.059 28 C -0.194 4.194 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.253 0.747 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.200 0.800 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.206 0.794 44 H 0.170 0.830 45 H 0.156 0.844 46 H 0.072 0.928 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.845 -29.086 12.924 33.625 hybrid contribution -0.218 1.237 0.128 1.263 sum 10.627 -27.849 13.052 32.540 Atomic orbital electron populations 1.69834 1.06746 1.25891 1.59880 1.25592 0.96347 1.01242 1.04024 0.85079 0.78409 0.79866 0.76461 1.18670 1.22246 1.22385 1.19789 0.91666 0.85367 1.40460 0.90152 1.42648 1.05358 1.01289 1.87478 1.22008 0.95668 0.83803 0.95259 1.23326 0.99911 0.95908 0.98534 1.22477 0.99474 0.92903 0.96506 1.21279 0.95000 0.91939 0.90451 1.45797 1.14442 1.35113 1.40460 1.18547 0.86060 0.80191 0.80977 1.90770 1.17331 1.70935 1.67615 1.19938 0.95454 1.00431 1.00923 1.21413 0.92236 0.97607 0.95222 1.21031 1.01850 0.96000 0.97852 1.18312 0.92560 0.92249 0.90359 1.41798 1.09242 1.27371 1.29595 1.22388 1.00765 0.94275 0.98148 1.21378 0.93285 1.04036 1.03746 1.21387 0.99923 0.99471 1.01806 1.22442 0.84956 1.05006 1.02697 1.20922 0.92585 1.02727 1.00856 1.21160 1.00551 0.91814 0.92342 1.23753 1.01132 0.96039 0.98504 0.94169 0.79712 0.89991 0.90227 0.91594 0.85739 0.91377 0.93426 0.74673 0.81930 0.82089 0.79981 0.82728 0.82622 0.79418 0.82953 0.84427 0.92763 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 3 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 7 C -0.24 -13.18 9.97 84.03 0.84 -12.34 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -36.29 5.41 -320.18 -1.73 -38.02 16 10 C 0.14 5.18 4.48 45.57 0.20 5.38 16 11 C -0.14 -4.03 7.39 31.12 0.23 -3.80 16 12 C -0.09 -2.14 3.75 -10.27 -0.04 -2.18 16 13 C 0.14 3.27 5.50 86.38 0.47 3.74 16 14 N -0.71 -13.89 5.51 -466.15 -2.57 -16.46 16 15 C 0.55 13.35 7.77 86.72 0.67 14.02 16 16 O -0.58 -19.26 16.34 -3.96 -0.06 -19.32 16 17 C -0.16 -2.99 5.88 -20.08 -0.12 -3.11 16 18 C -0.05 -0.55 9.53 22.50 0.21 -0.34 16 19 C -0.15 -1.66 9.43 22.34 0.21 -1.45 16 20 C 0.16 2.24 6.62 38.26 0.25 2.49 16 21 N -0.41 -5.77 2.97 -346.57 -1.03 -6.79 16 22 C -0.03 -0.40 10.73 83.16 0.89 0.49 16 23 C -0.20 -2.61 10.86 22.16 0.24 -2.37 16 24 C -0.20 -2.57 10.86 22.16 0.24 -2.33 16 25 C -0.03 -0.32 10.73 83.16 0.89 0.57 16 26 C -0.15 -2.15 9.43 22.34 0.21 -1.94 16 27 C -0.04 -0.69 9.58 22.50 0.22 -0.48 16 28 C -0.15 -4.62 7.45 31.18 0.23 -4.39 16 29 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.37 20.17 7.92 -92.71 -0.73 19.44 16 31 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.16 8.08 -2.38 -0.02 2.14 16 34 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.05 1.39 7.87 -2.39 -0.02 1.38 16 37 H 0.42 5.29 6.49 -92.71 -0.60 4.69 16 38 H 0.16 0.99 6.39 -2.91 -0.02 0.98 16 39 H 0.16 0.97 6.68 -2.91 -0.02 0.95 16 40 H 0.18 1.53 6.99 -2.91 -0.02 1.51 16 41 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.19 1.24 6.99 -2.91 -0.02 1.22 16 44 H 0.15 1.54 6.68 -2.91 -0.02 1.52 16 45 H 0.14 2.58 7.64 -2.91 -0.02 2.55 16 46 H 0.05 1.92 7.92 -2.39 -0.02 1.90 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -75.08 392.17 2.92 -72.16 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.33 Total: 32.41 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 6.33 Total: -12.15 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -5.04 Total: -120.99 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.08 2.92 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091125743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.304 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds