Wall clock time and date at job start Tue Mar 31 2020 22:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00092 * 2 1 4 4 H 1.48496 * 109.47266 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.46703 * 30.00324 * 3 2 1 6 6 H 1.48500 * 109.46754 * 150.00256 * 3 2 1 7 7 C 1.38815 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99936 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.52993 * 113.70060 * 220.01038 * 12 11 10 14 14 N 1.46501 * 109.47405 * 272.53026 * 13 12 11 15 15 C 1.34771 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21546 * 120.00302 * 0.02562 * 15 14 13 17 17 C 1.47863 * 119.99595 * 180.02562 * 15 14 13 18 18 C 1.39616 * 120.11557 * 359.72766 * 17 15 14 19 19 C 1.37978 * 119.98571 * 179.74713 * 18 17 15 20 20 C 1.38270 * 120.21364 * 0.54691 * 19 18 17 21 21 C 1.38905 * 120.23244 * 359.70623 * 20 19 18 22 22 N 1.40217 * 119.99671 * 180.02562 * 21 20 19 23 23 C 1.36573 * 125.66936 * 179.67117 * 22 21 20 24 24 C 1.34850 * 108.20138 * 179.89154 * 23 22 21 25 25 C 1.40941 * 107.46511 * 0.36045 * 24 23 22 26 26 C 1.34853 * 107.47111 * 359.77817 * 25 24 23 27 27 C 1.38596 * 120.00634 * 0.02562 * 21 20 19 28 28 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 29 29 H 0.97001 * 119.99982 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 31 31 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 32 32 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 33 33 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 34 34 H 1.08998 * 113.61160 * 89.11169 * 12 11 10 35 35 H 1.09002 * 109.46900 * 32.52907 * 13 12 11 36 36 H 1.08998 * 109.47474 * 152.53098 * 13 12 11 37 37 H 0.96997 * 119.99408 * 0.02562 * 14 13 12 38 38 H 1.08000 * 120.00606 * 359.97438 * 18 17 15 39 39 H 1.07992 * 119.89046 * 180.25071 * 19 18 17 40 40 H 1.07998 * 119.88280 * 179.72179 * 20 19 18 41 41 H 1.08006 * 125.89819 * 0.02562 * 23 22 21 42 42 H 1.07998 * 126.26557 * 180.16049 * 24 23 22 43 43 H 1.07999 * 126.26409 * 179.79010 * 25 24 23 44 44 H 1.07991 * 125.90100 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.10480 * 180.02562 * 27 21 20 46 46 H 1.09001 * 113.61158 * 203.66864 * 28 10 9 47 47 H 1.08998 * 113.61196 * 334.56885 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 4.7541 -2.8117 1.3541 12 6 5.9934 -2.0349 0.8704 13 6 7.3201 -2.6921 1.2558 14 7 7.7251 -2.2312 2.5862 15 6 8.8706 -2.6812 3.1355 16 8 9.5680 -3.4690 2.5269 17 6 9.2790 -2.2164 4.4784 18 6 8.4826 -1.3071 5.1771 19 6 8.8636 -0.8792 6.4323 20 6 10.0386 -1.3393 6.9974 21 6 10.8404 -2.2401 6.3081 22 7 12.0307 -2.7039 6.8860 23 6 12.8994 -3.5911 6.3171 24 6 13.9223 -3.7872 7.1736 25 6 13.6742 -3.0001 8.3161 26 6 12.5112 -2.3481 8.1138 27 6 10.4639 -2.6804 5.0490 28 6 5.5392 -2.3583 -0.5628 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 -0.0014 31 1 3.5373 -3.2915 -0.4305 32 1 4.2516 -2.3495 2.2039 33 1 4.9347 -3.8772 1.4962 34 1 5.9627 -0.9717 1.1086 35 1 7.1990 -3.7753 1.2679 36 1 8.0852 -2.4200 0.5287 37 1 7.1684 -1.6028 3.0719 38 1 7.5667 -0.9415 4.7368 39 1 8.2444 -0.1789 6.9731 40 1 10.3340 -0.9974 7.9784 41 1 12.7875 -4.0538 5.3476 42 1 14.7739 -4.4320 7.0146 43 1 14.3009 -2.9315 9.1930 44 1 12.0409 -1.6632 8.8037 45 1 11.0859 -3.3811 4.5117 46 1 5.9340 -3.3002 -0.9439 47 1 5.6700 -1.5305 -1.2596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091127411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:58 Heat of formation + Delta-G solvation = 83.529434 kcal Electronic energy + Delta-G solvation = -27358.946687 eV Core-core repulsion = 23508.801024 eV Total energy + Delta-G solvation = -3850.145663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03119 -40.40531 -39.04535 -38.31408 -34.98066 -33.75894 -33.21003 -31.92416 -30.73769 -29.43442 -29.22988 -27.64756 -25.25451 -24.49336 -23.61797 -23.23162 -21.85216 -21.44468 -20.39363 -20.09437 -19.29576 -18.49124 -17.73007 -17.07958 -16.66811 -16.32244 -15.65408 -15.34942 -15.21977 -15.04558 -14.75247 -14.47319 -14.30822 -13.98759 -13.88589 -13.67330 -13.61757 -12.97496 -12.78696 -12.72905 -12.61112 -12.54311 -12.27232 -12.11355 -11.84968 -11.64652 -11.42111 -10.97237 -10.58185 -10.44549 -10.34609 -10.24846 -10.03080 -9.72956 -9.62963 -9.59627 -9.18150 -8.97052 -8.64540 -8.47405 -7.36429 -5.85216 -3.21708 0.22448 0.55236 1.92379 2.34872 2.61485 2.62513 2.93136 3.28459 3.32258 3.38258 3.40992 4.13273 4.19030 4.39735 4.50254 4.53966 4.62758 4.64527 4.77836 4.83040 4.85536 4.97263 5.03566 5.10823 5.23204 5.33209 5.34095 5.36025 5.42484 5.51341 5.67343 5.70093 5.76599 5.78166 5.83685 5.85584 5.91114 6.05886 6.09396 6.16161 6.21563 6.41750 6.51471 6.55310 6.66065 6.77603 6.82551 6.99886 7.26778 7.92465 7.94372 8.34340 9.11964 9.84083 10.03186 11.32823 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.001891 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.918580 B =14801.734654 C =15729.743359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.167 4.167 12 C -0.124 4.124 13 C 0.130 3.870 14 N -0.716 5.716 15 C 0.555 3.445 16 O -0.538 6.538 17 C -0.102 4.102 18 C -0.099 4.099 19 C -0.094 4.094 20 C -0.118 4.118 21 C 0.132 3.868 22 N -0.397 5.397 23 C -0.013 4.013 24 C -0.191 4.191 25 C -0.189 4.189 26 C -0.018 4.018 27 C -0.083 4.083 28 C -0.147 4.147 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.167 0.833 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.144 0.856 46 H 0.083 0.917 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.373 -3.792 15.621 30.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 C -0.208 4.208 12 C -0.143 4.143 13 C 0.008 3.992 14 N -0.367 5.367 15 C 0.342 3.658 16 O -0.416 6.416 17 C -0.105 4.105 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.138 4.138 21 C 0.040 3.960 22 N -0.069 5.069 23 C -0.140 4.140 24 C -0.214 4.214 25 C -0.213 4.213 26 C -0.144 4.144 27 C -0.103 4.103 28 C -0.187 4.187 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.184 0.816 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.182 0.818 45 H 0.162 0.838 46 H 0.101 0.899 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 25.329 -4.313 15.015 29.759 hybrid contribution 0.337 1.612 0.386 1.692 sum 25.666 -2.701 15.401 30.054 Atomic orbital electron populations 1.69697 1.05094 1.25911 1.57121 1.24684 0.95246 0.97203 1.01863 0.86561 0.79079 0.85028 0.77858 1.21001 1.21672 1.20452 1.19110 0.80402 0.94853 1.43385 0.89016 1.42509 1.03954 1.01576 1.88967 1.21003 0.90071 0.89898 0.92975 1.23911 0.96311 0.98766 1.01770 1.22815 0.92670 1.00079 0.98759 1.21537 0.96193 0.99245 0.82268 1.45980 1.23222 1.47579 1.19968 1.18135 0.81278 0.81157 0.85242 1.90779 1.53212 1.34486 1.63095 1.19808 0.95968 0.99514 0.95243 1.21442 0.99407 0.96049 0.94889 1.20999 0.95731 0.99477 0.95062 1.21024 0.94929 0.97291 1.00560 1.17755 0.86917 0.97709 0.93616 1.41638 1.16113 1.34350 1.14836 1.22018 0.92399 0.98455 1.01085 1.21025 1.00279 1.04869 0.95271 1.21019 0.98001 1.02004 1.00309 1.21900 0.98244 1.06012 0.88237 1.20866 0.96484 0.99964 0.93030 1.23440 0.98768 1.01707 0.94783 0.92959 0.80540 0.91091 0.91268 0.90897 0.89177 0.91073 0.91471 0.76228 0.84684 0.84138 0.84725 0.81584 0.84054 0.84105 0.81761 0.83836 0.89895 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.97 55.49 0.78 -27.74 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.27 27.74 -169.99 -4.71 16.56 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.19 6.52 56.52 0.37 -5.83 16 7 C -0.25 -6.74 10.45 -15.06 -0.16 -6.89 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.73 -16.29 5.11 -52.64 -0.27 -16.56 16 10 C 0.17 3.06 4.55 -67.12 -0.31 2.76 16 11 C -0.17 -2.49 7.45 -25.78 -0.19 -2.68 16 12 C -0.12 -1.62 3.64 -89.67 -0.33 -1.94 16 13 C 0.13 1.54 5.51 -4.04 -0.02 1.52 16 14 N -0.72 -7.80 5.51 -61.25 -0.34 -8.14 16 15 C 0.56 6.83 7.77 -12.32 -0.10 6.74 16 16 O -0.54 -8.37 16.34 5.33 0.09 -8.28 16 17 C -0.10 -1.03 5.87 -104.99 -0.62 -1.65 16 18 C -0.10 -0.77 9.54 -39.16 -0.37 -1.14 16 19 C -0.09 -0.62 10.03 -39.66 -0.40 -1.02 16 20 C -0.12 -0.85 9.45 -39.32 -0.37 -1.22 16 21 C 0.13 1.21 6.61 -83.64 -0.55 0.66 16 22 N -0.40 -3.67 2.97 -60.96 -0.18 -3.85 16 23 C -0.01 -0.12 10.73 -16.64 -0.18 -0.30 16 24 C -0.19 -1.61 10.86 -39.76 -0.43 -2.04 16 25 C -0.19 -1.52 10.86 -39.76 -0.43 -1.95 16 26 C -0.02 -0.14 10.73 -16.64 -0.18 -0.32 16 27 C -0.08 -0.84 9.00 -38.99 -0.35 -1.19 16 28 C -0.15 -2.07 7.38 -25.92 -0.19 -2.27 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.36 7.89 5.76 -40.82 -0.24 7.66 16 31 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 32 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 33 H 0.07 0.98 7.91 -51.93 -0.41 0.57 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 3.60 6.50 -40.82 -0.27 3.33 16 38 H 0.14 0.82 6.40 -52.49 -0.34 0.48 16 39 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.67 6.69 -52.49 -0.35 0.32 16 41 H 0.17 1.26 7.01 -52.48 -0.37 0.89 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.17 0.85 7.00 -52.49 -0.37 0.48 16 45 H 0.14 1.48 6.29 -52.48 -0.33 1.15 16 46 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -33.57 389.05 -10.51 -44.08 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.46 Total: 10.93 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -5.27 Total: -12.86 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.01 Total: -56.29 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.57 -10.51 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091127411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.608 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds