Wall clock time and date at job start Tue Mar 31 2020 22:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00092 * 2 1 4 4 H 1.48496 * 109.47266 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.46703 * 30.00324 * 3 2 1 6 6 H 1.48500 * 109.46754 * 150.00256 * 3 2 1 7 7 C 1.38815 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99936 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.52993 * 113.70060 * 220.01038 * 12 11 10 14 14 N 1.46501 * 109.47405 * 272.53026 * 13 12 11 15 15 C 1.34771 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21546 * 120.00302 * 0.02562 * 15 14 13 17 17 C 1.47863 * 119.99595 * 180.02562 * 15 14 13 18 18 C 1.39616 * 120.11557 * 359.72766 * 17 15 14 19 19 C 1.37978 * 119.98571 * 179.74713 * 18 17 15 20 20 C 1.38270 * 120.21364 * 0.54691 * 19 18 17 21 21 C 1.38905 * 120.23244 * 359.70623 * 20 19 18 22 22 N 1.40217 * 119.99671 * 180.02562 * 21 20 19 23 23 C 1.36573 * 125.66936 * 179.67117 * 22 21 20 24 24 C 1.34850 * 108.20138 * 179.89154 * 23 22 21 25 25 C 1.40941 * 107.46511 * 0.36045 * 24 23 22 26 26 C 1.34853 * 107.47111 * 359.77817 * 25 24 23 27 27 C 1.38596 * 120.00634 * 0.02562 * 21 20 19 28 28 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 29 29 H 0.97001 * 119.99982 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 31 31 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 32 32 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 33 33 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 34 34 H 1.08998 * 113.61160 * 89.11169 * 12 11 10 35 35 H 1.09002 * 109.46900 * 32.52907 * 13 12 11 36 36 H 1.08998 * 109.47474 * 152.53098 * 13 12 11 37 37 H 0.96997 * 119.99408 * 0.02562 * 14 13 12 38 38 H 1.08000 * 120.00606 * 359.97438 * 18 17 15 39 39 H 1.07992 * 119.89046 * 180.25071 * 19 18 17 40 40 H 1.07998 * 119.88280 * 179.72179 * 20 19 18 41 41 H 1.08006 * 125.89819 * 0.02562 * 23 22 21 42 42 H 1.07998 * 126.26557 * 180.16049 * 24 23 22 43 43 H 1.07999 * 126.26409 * 179.79010 * 25 24 23 44 44 H 1.07991 * 125.90100 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.10480 * 180.02562 * 27 21 20 46 46 H 1.09001 * 113.61158 * 203.66864 * 28 10 9 47 47 H 1.08998 * 113.61196 * 334.56885 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 4.7541 -2.8117 1.3541 12 6 5.9934 -2.0349 0.8704 13 6 7.3201 -2.6921 1.2558 14 7 7.7251 -2.2312 2.5862 15 6 8.8706 -2.6812 3.1355 16 8 9.5680 -3.4690 2.5269 17 6 9.2790 -2.2164 4.4784 18 6 8.4826 -1.3071 5.1771 19 6 8.8636 -0.8792 6.4323 20 6 10.0386 -1.3393 6.9974 21 6 10.8404 -2.2401 6.3081 22 7 12.0307 -2.7039 6.8860 23 6 12.8994 -3.5911 6.3171 24 6 13.9223 -3.7872 7.1736 25 6 13.6742 -3.0001 8.3161 26 6 12.5112 -2.3481 8.1138 27 6 10.4639 -2.6804 5.0490 28 6 5.5392 -2.3583 -0.5628 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 -0.0014 31 1 3.5373 -3.2915 -0.4305 32 1 4.2516 -2.3495 2.2039 33 1 4.9347 -3.8772 1.4962 34 1 5.9627 -0.9717 1.1086 35 1 7.1990 -3.7753 1.2679 36 1 8.0852 -2.4200 0.5287 37 1 7.1684 -1.6028 3.0719 38 1 7.5667 -0.9415 4.7368 39 1 8.2444 -0.1789 6.9731 40 1 10.3340 -0.9974 7.9784 41 1 12.7875 -4.0538 5.3476 42 1 14.7739 -4.4320 7.0146 43 1 14.3009 -2.9315 9.1930 44 1 12.0409 -1.6632 8.8037 45 1 11.0859 -3.3811 4.5117 46 1 5.9340 -3.3002 -0.9439 47 1 5.6700 -1.5305 -1.2596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091127411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:57 Heat of formation + Delta-G solvation = 63.959783 kcal Electronic energy + Delta-G solvation = -27359.795291 eV Core-core repulsion = 23508.801024 eV Total energy + Delta-G solvation = -3850.994267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.63230 -41.27575 -40.15344 -39.17783 -36.17790 -35.10799 -34.22219 -32.76315 -32.43012 -30.16589 -29.81398 -28.72648 -26.46316 -25.69246 -24.79572 -24.11090 -23.08321 -22.21051 -21.02313 -20.84935 -20.23852 -19.69687 -19.51048 -17.85740 -17.44342 -17.10675 -16.66420 -16.54998 -16.12344 -15.94402 -15.87062 -15.62649 -15.14512 -15.07159 -14.86086 -14.63047 -14.56030 -14.43021 -14.12216 -13.55563 -13.34523 -13.29286 -13.19322 -13.08717 -13.01274 -12.81725 -12.68145 -12.47323 -12.17592 -11.87825 -11.66406 -11.58651 -11.18402 -10.96875 -10.95841 -10.82038 -10.32977 -10.05673 -9.28813 -9.25451 -9.08752 -8.01737 -5.35575 -0.41836 -0.08052 1.30408 1.37744 1.42789 1.49733 1.73384 1.82514 2.02145 2.09094 2.49060 2.72888 3.28510 3.44090 3.51728 3.62097 3.71716 3.79449 3.81772 3.95172 4.01394 4.03200 4.10771 4.24438 4.27019 4.36161 4.41987 4.56011 4.65544 4.69809 4.75392 4.76742 4.93483 4.94573 4.97533 5.08115 5.09623 5.19182 5.22421 5.28331 5.31470 5.32425 5.44446 5.54018 5.57600 5.81602 5.92969 6.17496 6.23314 6.39852 6.42364 7.05980 7.08848 7.85450 8.04418 9.19701 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.001891 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.918580 B =14801.734654 C =15729.743359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.245 1.245 7 C -0.233 4.233 8 H 0.055 0.945 9 N -0.733 5.733 10 C 0.144 3.856 11 C -0.155 4.155 12 C -0.104 4.104 13 C 0.137 3.863 14 N -0.708 5.708 15 C 0.554 3.446 16 O -0.579 6.579 17 C -0.119 4.119 18 C -0.095 4.095 19 C -0.087 4.087 20 C -0.111 4.111 21 C 0.118 3.882 22 N -0.405 5.405 23 C -0.039 4.039 24 C -0.199 4.199 25 C -0.203 4.203 26 C -0.022 4.022 27 C -0.099 4.099 28 C -0.133 4.133 29 H 0.257 0.743 30 H 0.367 0.633 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.413 0.587 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.154 0.846 43 H 0.160 0.840 44 H 0.194 0.806 45 H 0.128 0.872 46 H 0.106 0.894 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.343 -2.129 17.422 32.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.170 1.170 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.375 5.375 10 C 0.035 3.965 11 C -0.195 4.195 12 C -0.123 4.123 13 C 0.014 3.986 14 N -0.359 5.359 15 C 0.342 3.658 16 O -0.461 6.461 17 C -0.123 4.123 18 C -0.114 4.114 19 C -0.106 4.106 20 C -0.131 4.131 21 C 0.026 3.974 22 N -0.078 5.078 23 C -0.165 4.165 24 C -0.223 4.223 25 C -0.227 4.227 26 C -0.148 4.148 27 C -0.120 4.120 28 C -0.172 4.172 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.251 0.749 38 H 0.172 0.828 39 H 0.192 0.808 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.171 0.829 43 H 0.177 0.823 44 H 0.211 0.789 45 H 0.146 0.854 46 H 0.124 0.876 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 27.348 -2.676 16.830 32.223 hybrid contribution -0.289 0.958 -0.150 1.012 sum 27.058 -1.719 16.680 31.833 Atomic orbital electron populations 1.69892 1.07258 1.26690 1.59639 1.25532 0.96112 1.01362 1.02641 0.85394 0.78817 0.79414 0.78028 1.20757 1.22430 1.16961 1.19056 0.82652 0.93414 1.41270 0.92692 1.42410 1.02189 1.03480 1.89377 1.21343 0.91618 0.87816 0.95732 1.23758 0.96533 1.00084 0.99157 1.22630 0.92247 0.99937 0.97505 1.21385 0.95421 0.98953 0.82828 1.45880 1.22970 1.47419 1.19642 1.18479 0.80986 0.80448 0.85843 1.90753 1.54504 1.36456 1.64337 1.19687 0.96794 1.01192 0.94618 1.21704 0.99504 0.94950 0.95268 1.21399 0.95548 0.99149 0.94463 1.21409 0.94481 0.95882 1.01323 1.17936 0.87408 0.98497 0.93544 1.41784 1.16207 1.34461 1.15311 1.22239 0.93176 0.99411 1.01715 1.21334 1.00467 1.05040 0.95488 1.21359 0.98555 1.01983 1.00783 1.22453 0.98259 1.06046 0.88030 1.20830 0.96813 1.00482 0.93856 1.23346 0.95312 1.03057 0.95471 0.93380 0.79907 0.92629 0.92644 0.89227 0.88892 0.91349 0.91312 0.74912 0.82779 0.80832 0.82106 0.81519 0.82878 0.82263 0.78948 0.85413 0.87582 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.01 13.97 21.65 0.30 -61.70 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 3 Si 0.96 43.51 27.74 68.60 1.90 45.41 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.25 -9.70 6.52 99.48 0.65 -9.05 16 7 C -0.23 -12.86 10.45 84.04 0.88 -11.98 16 8 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 9 N -0.73 -31.97 5.11 -320.45 -1.64 -33.61 16 10 C 0.14 4.98 4.55 45.51 0.21 5.19 16 11 C -0.15 -4.32 7.45 31.21 0.23 -4.09 16 12 C -0.10 -2.42 3.64 -10.18 -0.04 -2.45 16 13 C 0.14 2.92 5.51 86.38 0.48 3.40 16 14 N -0.71 -13.96 5.51 -465.98 -2.57 -16.52 16 15 C 0.55 13.22 7.77 86.79 0.67 13.89 16 16 O -0.58 -18.23 16.34 -3.86 -0.06 -18.30 16 17 C -0.12 -2.30 5.87 -20.10 -0.12 -2.42 16 18 C -0.10 -1.22 9.54 22.54 0.21 -1.00 16 19 C -0.09 -0.82 10.03 22.22 0.22 -0.59 16 20 C -0.11 -1.26 9.45 22.44 0.21 -1.04 16 21 C 0.12 2.03 6.61 38.04 0.25 2.28 16 22 N -0.41 -7.18 2.97 -346.78 -1.03 -8.21 16 23 C -0.04 -0.73 10.73 83.18 0.89 0.17 16 24 C -0.20 -3.32 10.86 22.15 0.24 -3.08 16 25 C -0.20 -2.98 10.86 22.15 0.24 -2.74 16 26 C -0.02 -0.31 10.73 83.18 0.89 0.58 16 27 C -0.10 -2.02 9.00 22.65 0.20 -1.81 16 28 C -0.13 -3.39 7.38 31.12 0.23 -3.16 16 29 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.37 15.12 5.76 -92.71 -0.53 14.59 16 31 H 0.06 2.06 8.11 -2.39 -0.02 2.04 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.09 2.22 7.91 -2.39 -0.02 2.20 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.41 6.20 6.50 -92.71 -0.60 5.59 16 38 H 0.15 1.29 6.40 -2.91 -0.02 1.27 16 39 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 40 H 0.16 0.91 6.69 -2.91 -0.02 0.89 16 41 H 0.17 2.81 7.01 -2.91 -0.02 2.79 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.19 1.36 7.00 -2.92 -0.02 1.34 16 45 H 0.13 2.88 6.29 -2.91 -0.02 2.86 16 46 H 0.11 2.26 8.10 -2.39 -0.02 2.24 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -75.74 389.05 3.10 -72.65 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.19 Total: 32.41 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 6.38 Total: -12.13 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -4.93 Total: -120.04 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.06 Total: -18.30 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.90 Total: 45.41 kcal Total: -75.74 3.10 -72.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091127411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.606 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds