Wall clock time and date at job start Tue Mar 31 2020 23:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39044 * 121.02134 * 2 1 4 4 C 1.47760 * 120.26880 * 359.97438 * 3 2 1 5 5 O 1.21565 * 119.99655 * 353.94942 * 4 3 2 6 6 N 1.34774 * 120.00259 * 173.94334 * 4 3 2 7 7 C 1.46505 * 120.00018 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46851 * 180.02562 * 7 6 4 9 9 C 1.53782 * 113.61427 * 274.13345 * 8 7 6 10 10 C 1.53950 * 87.02129 * 220.05426 * 9 8 7 11 11 N 1.46509 * 113.53399 * 270.81051 * 10 9 8 12 12 C 1.36929 * 119.99781 * 252.49672 * 11 10 9 13 13 H 1.07998 * 120.00592 * 359.97438 * 12 11 10 14 14 C 1.38813 * 120.00175 * 180.02562 * 12 11 10 15 15 N 1.31624 * 119.99789 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00497 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47280 * 59.99805 * 16 14 12 18 18 H 1.48504 * 109.47186 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46922 * 299.99443 * 16 14 12 20 20 C 1.53778 * 87.11327 * 25.35879 * 10 9 8 21 21 C 1.40563 * 119.46479 * 180.02562 * 3 2 1 22 22 N 1.30818 * 121.53957 * 0.02754 * 21 3 2 23 23 C 1.33794 * 121.72198 * 359.97438 * 22 21 3 24 24 C 1.40537 * 120.82997 * 179.97438 * 23 22 21 25 25 C 1.36130 * 119.81264 * 180.27876 * 24 23 22 26 26 C 1.39355 * 121.09479 * 359.40039 * 25 24 23 27 27 C 1.36138 * 120.83037 * 0.64600 * 26 25 24 28 28 C 1.40495 * 121.01838 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47098 * 83.64613 * 1 2 3 30 30 H 1.09000 * 109.47074 * 203.64758 * 1 2 3 31 31 H 1.09002 * 109.46884 * 323.64211 * 1 2 3 32 32 H 0.96995 * 120.00210 * 0.02562 * 6 4 3 33 33 H 1.09005 * 109.46743 * 300.00119 * 7 6 4 34 34 H 1.09001 * 109.46919 * 60.00143 * 7 6 4 35 35 H 1.08998 * 112.85422 * 45.33189 * 8 7 6 36 36 H 1.09004 * 113.60921 * 334.57394 * 9 8 7 37 37 H 1.08997 * 113.61695 * 105.46593 * 9 8 7 38 38 H 1.09001 * 113.74370 * 139.94543 * 10 9 8 39 39 H 0.96998 * 119.99613 * 72.49794 * 11 10 9 40 40 H 0.96999 * 120.00805 * 180.02562 * 15 14 12 41 41 H 1.08997 * 113.61796 * 220.09121 * 20 10 9 42 42 H 1.09009 * 113.61289 * 89.18869 * 20 10 9 43 43 H 1.08001 * 119.22819 * 180.02562 * 21 3 2 44 44 H 1.07995 * 120.09329 * 359.97438 * 24 23 22 45 45 H 1.07990 * 119.45326 * 179.72200 * 25 24 23 46 46 H 1.07994 * 119.58345 * 180.33487 * 26 25 24 47 47 H 1.08001 * 120.18415 * 179.64698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5138 2.4875 -0.0006 5 8 0.3036 2.5176 -0.1120 6 7 2.2079 3.6362 0.1226 7 6 1.5041 4.9211 0.1226 8 6 2.5172 6.0575 0.2741 9 6 2.8711 6.3763 1.7363 10 6 2.8444 7.8623 1.3347 11 7 4.1368 8.3635 0.8606 12 6 4.8722 9.2109 1.6455 13 1 4.4993 9.5101 2.6139 14 6 6.0965 9.6862 1.1962 15 7 6.5509 9.3220 0.0158 16 14 7.1000 10.8417 2.2673 17 1 7.4254 10.1696 3.5509 18 1 8.3574 11.2019 1.5640 19 1 6.3149 12.0728 2.5381 20 6 1.8870 7.4584 0.2010 21 6 3.6287 1.1534 -0.0005 22 7 4.2824 0.0203 -0.0016 23 6 3.6482 -1.1578 -0.0017 24 6 4.3694 -2.3640 -0.0034 25 6 3.7030 -3.5510 -0.0092 26 6 2.3101 -3.5944 -0.0010 27 6 1.5764 -2.4477 -0.0002 28 6 2.2310 -1.2040 -0.0005 29 1 -0.3633 0.1137 -1.0213 30 1 -0.3633 -0.9414 0.4122 31 1 -0.3633 0.8276 0.6092 32 1 3.1735 3.6122 0.2112 33 1 0.9637 5.0393 -0.8167 34 1 0.7990 4.9491 0.9534 35 1 3.3884 5.9366 -0.3696 36 1 2.0895 6.1013 2.4446 37 1 3.8576 6.0211 2.0342 38 1 2.3872 8.5108 2.0821 39 1 4.4716 8.0950 -0.0093 40 1 7.4066 9.6538 -0.2981 41 1 2.0802 7.9756 -0.7388 42 1 0.8358 7.4798 0.4888 43 1 4.1815 2.0812 -0.0001 44 1 5.4493 -2.3493 -0.0050 45 1 4.2630 -4.4744 -0.0150 46 1 1.8065 -4.5497 -0.0004 47 1 0.4973 -2.4935 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091148336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:49 Heat of formation + Delta-G solvation = 49.201890 kcal Electronic energy + Delta-G solvation = -27768.496937 eV Core-core repulsion = 23916.862719 eV Total energy + Delta-G solvation = -3851.634217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43226 -39.76409 -38.55376 -37.21834 -35.22445 -34.45741 -33.26352 -31.31774 -30.69097 -30.11273 -28.48812 -27.14431 -25.08703 -24.58043 -24.25525 -23.58940 -21.80756 -21.44544 -21.02113 -18.88220 -18.24648 -18.05869 -17.48084 -17.08074 -16.08817 -15.85347 -15.57961 -15.02266 -14.77527 -14.73864 -14.66820 -14.30729 -14.11377 -13.97081 -13.58030 -13.43445 -13.11536 -13.04580 -12.88810 -12.48154 -12.25631 -12.16260 -12.10563 -11.93236 -11.85358 -11.42605 -11.05876 -10.84139 -10.52732 -10.50321 -10.25267 -10.20451 -9.95199 -9.70586 -9.61337 -9.47563 -9.24099 -9.03091 -8.89456 -8.57646 -7.01793 -5.81922 -3.11116 -0.10821 0.26948 1.50483 2.25324 2.99604 3.04435 3.41818 3.46431 3.47263 3.74861 3.86173 4.12317 4.29662 4.33925 4.43841 4.54643 4.59214 4.71258 4.83951 5.01509 5.01986 5.06283 5.09200 5.20487 5.32014 5.41001 5.43676 5.51594 5.58521 5.60540 5.64930 5.68434 5.82167 5.84105 5.91796 5.98243 6.05577 6.10282 6.14976 6.18939 6.34769 6.36425 6.41169 6.56248 6.72493 6.86997 7.02007 7.38660 7.53451 7.67301 8.06106 8.37156 9.47814 10.05109 10.39300 11.40342 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002041 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.810774 B =13717.229943 C =15066.245926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.048 3.952 3 C -0.204 4.204 4 C 0.562 3.438 5 O -0.536 6.536 6 N -0.717 5.717 7 C 0.132 3.868 8 C -0.121 4.121 9 C -0.169 4.169 10 C 0.167 3.833 11 N -0.705 5.705 12 C -0.243 4.243 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.933 5.933 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.147 4.147 21 C 0.169 3.831 22 N -0.480 5.480 23 C 0.145 3.855 24 C -0.098 4.098 25 C -0.092 4.092 26 C -0.123 4.123 27 C -0.087 4.087 28 C -0.115 4.115 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.385 0.615 40 H 0.257 0.743 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 -26.099 -1.088 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.039 3.961 3 C -0.209 4.209 4 C 0.349 3.651 5 O -0.415 6.415 6 N -0.368 5.368 7 C 0.009 3.991 8 C -0.140 4.140 9 C -0.210 4.210 10 C 0.055 3.945 11 N -0.344 5.344 12 C -0.375 4.375 13 H 0.089 0.911 14 C -0.209 4.209 15 N -0.580 5.580 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.187 4.187 21 C -0.005 4.005 22 N -0.188 5.188 23 C 0.024 3.976 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.141 4.141 27 C -0.105 4.105 28 C -0.117 4.117 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.237 0.763 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.180 0.820 44 H 0.156 0.844 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.058 -26.006 -1.051 28.278 hybrid contribution 0.493 0.487 0.244 0.735 sum -10.565 -25.519 -0.807 27.631 Atomic orbital electron populations 1.21191 0.88706 1.03866 1.04492 1.20672 0.97283 0.90506 0.87629 1.20815 0.95166 0.94295 1.10620 1.17925 0.86900 0.83423 0.76845 1.90719 1.13490 1.87143 1.50159 1.45999 1.11180 1.06027 1.73568 1.21530 0.94935 0.80759 1.01883 1.22727 0.98232 0.93479 0.99519 1.23924 1.00983 1.02035 0.94071 1.21090 0.87406 0.91897 0.94116 1.42160 1.17147 1.54637 1.20442 1.19238 0.99396 1.19759 0.99057 0.91050 1.24767 0.98073 1.00943 0.97073 1.69646 1.21078 1.48538 1.18770 0.86243 0.79538 0.80775 0.79471 1.21209 1.21680 1.21212 1.23438 0.99167 0.94751 1.01328 1.23083 0.90131 0.96720 0.90597 1.67971 1.39466 0.97457 1.13883 1.19035 0.89593 0.92666 0.96292 1.20862 1.00679 0.90063 1.00094 1.21002 0.94529 0.98085 0.97589 1.20953 0.94127 0.98595 1.00425 1.21114 1.00352 0.91007 0.98047 1.18725 0.94012 0.94077 1.04879 0.89446 0.91577 0.87647 0.76280 0.91564 0.91332 0.88816 0.91404 0.91453 0.91949 0.78105 0.93370 0.91282 0.90447 0.81950 0.84386 0.85069 0.85278 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.49 36.01 0.31 -0.87 16 2 C 0.05 0.52 5.99 -103.47 -0.62 -0.10 16 3 C -0.20 -2.37 5.89 -104.83 -0.62 -2.99 16 4 C 0.56 7.17 7.71 -12.37 -0.10 7.07 16 5 O -0.54 -7.95 13.45 5.31 0.07 -7.88 16 6 N -0.72 -8.42 5.51 -61.27 -0.34 -8.76 16 7 C 0.13 1.66 5.50 -4.04 -0.02 1.64 16 8 C -0.12 -1.72 3.62 -89.81 -0.33 -2.05 16 9 C -0.17 -2.71 7.44 -25.83 -0.19 -2.90 16 10 C 0.17 3.18 4.57 -67.03 -0.31 2.87 16 11 N -0.71 -17.06 5.31 -52.55 -0.28 -17.34 16 12 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 13 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 16 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.15 -2.27 7.39 -25.92 -0.19 -2.46 16 21 C 0.17 1.89 10.67 -17.11 -0.18 1.71 16 22 N -0.48 -5.92 10.30 -10.67 -0.11 -6.03 16 23 C 0.14 1.64 6.61 -84.78 -0.56 1.08 16 24 C -0.10 -0.88 9.97 -39.47 -0.39 -1.27 16 25 C -0.09 -0.62 9.94 -39.92 -0.40 -1.01 16 26 C -0.12 -0.79 9.96 -39.92 -0.40 -1.18 16 27 C -0.09 -0.67 9.32 -39.47 -0.37 -1.04 16 28 C -0.11 -1.19 5.74 -106.82 -0.61 -1.81 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.45 6.21 -51.93 -0.32 0.13 16 31 H 0.11 1.17 5.93 -51.93 -0.31 0.86 16 32 H 0.40 4.12 6.53 -40.82 -0.27 3.85 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.38 9.84 7.90 -40.82 -0.32 9.52 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.03 8.10 -51.92 -0.42 0.61 16 43 H 0.16 1.46 6.42 -52.49 -0.34 1.12 16 44 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -32.33 385.08 -10.85 -43.18 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.48 Total: 11.37 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -5.22 Total: -10.53 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.00 Total: -58.99 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.33 -10.85 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091148336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.386 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds