Wall clock time and date at job start Tue Mar 31 2020 23:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39044 * 121.02134 * 2 1 4 4 C 1.47760 * 120.26880 * 359.97438 * 3 2 1 5 5 O 1.21565 * 119.99655 * 353.94942 * 4 3 2 6 6 N 1.34774 * 120.00259 * 173.94334 * 4 3 2 7 7 C 1.46505 * 120.00018 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46851 * 180.02562 * 7 6 4 9 9 C 1.53782 * 113.61427 * 274.13345 * 8 7 6 10 10 C 1.53950 * 87.02129 * 220.05426 * 9 8 7 11 11 N 1.46509 * 113.53399 * 270.81051 * 10 9 8 12 12 C 1.36929 * 119.99781 * 252.49672 * 11 10 9 13 13 H 1.07998 * 120.00592 * 359.97438 * 12 11 10 14 14 C 1.38813 * 120.00175 * 180.02562 * 12 11 10 15 15 N 1.31624 * 119.99789 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00497 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47280 * 59.99805 * 16 14 12 18 18 H 1.48504 * 109.47186 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46922 * 299.99443 * 16 14 12 20 20 C 1.53778 * 87.11327 * 25.35879 * 10 9 8 21 21 C 1.40563 * 119.46479 * 180.02562 * 3 2 1 22 22 N 1.30818 * 121.53957 * 0.02754 * 21 3 2 23 23 C 1.33794 * 121.72198 * 359.97438 * 22 21 3 24 24 C 1.40537 * 120.82997 * 179.97438 * 23 22 21 25 25 C 1.36130 * 119.81264 * 180.27876 * 24 23 22 26 26 C 1.39355 * 121.09479 * 359.40039 * 25 24 23 27 27 C 1.36138 * 120.83037 * 0.64600 * 26 25 24 28 28 C 1.40495 * 121.01838 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47098 * 83.64613 * 1 2 3 30 30 H 1.09000 * 109.47074 * 203.64758 * 1 2 3 31 31 H 1.09002 * 109.46884 * 323.64211 * 1 2 3 32 32 H 0.96995 * 120.00210 * 0.02562 * 6 4 3 33 33 H 1.09005 * 109.46743 * 300.00119 * 7 6 4 34 34 H 1.09001 * 109.46919 * 60.00143 * 7 6 4 35 35 H 1.08998 * 112.85422 * 45.33189 * 8 7 6 36 36 H 1.09004 * 113.60921 * 334.57394 * 9 8 7 37 37 H 1.08997 * 113.61695 * 105.46593 * 9 8 7 38 38 H 1.09001 * 113.74370 * 139.94543 * 10 9 8 39 39 H 0.96998 * 119.99613 * 72.49794 * 11 10 9 40 40 H 0.96999 * 120.00805 * 180.02562 * 15 14 12 41 41 H 1.08997 * 113.61796 * 220.09121 * 20 10 9 42 42 H 1.09009 * 113.61289 * 89.18869 * 20 10 9 43 43 H 1.08001 * 119.22819 * 180.02562 * 21 3 2 44 44 H 1.07995 * 120.09329 * 359.97438 * 24 23 22 45 45 H 1.07990 * 119.45326 * 179.72200 * 25 24 23 46 46 H 1.07994 * 119.58345 * 180.33487 * 26 25 24 47 47 H 1.08001 * 120.18415 * 179.64698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5138 2.4875 -0.0006 5 8 0.3036 2.5176 -0.1120 6 7 2.2079 3.6362 0.1226 7 6 1.5041 4.9211 0.1226 8 6 2.5172 6.0575 0.2741 9 6 2.8711 6.3763 1.7363 10 6 2.8444 7.8623 1.3347 11 7 4.1368 8.3635 0.8606 12 6 4.8722 9.2109 1.6455 13 1 4.4993 9.5101 2.6139 14 6 6.0965 9.6862 1.1962 15 7 6.5509 9.3220 0.0158 16 14 7.1000 10.8417 2.2673 17 1 7.4254 10.1696 3.5509 18 1 8.3574 11.2019 1.5640 19 1 6.3149 12.0728 2.5381 20 6 1.8870 7.4584 0.2010 21 6 3.6287 1.1534 -0.0005 22 7 4.2824 0.0203 -0.0016 23 6 3.6482 -1.1578 -0.0017 24 6 4.3694 -2.3640 -0.0034 25 6 3.7030 -3.5510 -0.0092 26 6 2.3101 -3.5944 -0.0010 27 6 1.5764 -2.4477 -0.0002 28 6 2.2310 -1.2040 -0.0005 29 1 -0.3633 0.1137 -1.0213 30 1 -0.3633 -0.9414 0.4122 31 1 -0.3633 0.8276 0.6092 32 1 3.1735 3.6122 0.2112 33 1 0.9637 5.0393 -0.8167 34 1 0.7990 4.9491 0.9534 35 1 3.3884 5.9366 -0.3696 36 1 2.0895 6.1013 2.4446 37 1 3.8576 6.0211 2.0342 38 1 2.3872 8.5108 2.0821 39 1 4.4716 8.0950 -0.0093 40 1 7.4066 9.6538 -0.2981 41 1 2.0802 7.9756 -0.7388 42 1 0.8358 7.4798 0.4888 43 1 4.1815 2.0812 -0.0001 44 1 5.4493 -2.3493 -0.0050 45 1 4.2630 -4.4744 -0.0150 46 1 1.8065 -4.5497 -0.0004 47 1 0.4973 -2.4935 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091148336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:48 Heat of formation + Delta-G solvation = 29.432854 kcal Electronic energy + Delta-G solvation = -27769.354186 eV Core-core repulsion = 23916.862719 eV Total energy + Delta-G solvation = -3852.491467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19782 -40.76403 -39.83677 -37.92170 -36.26766 -35.47794 -34.95578 -32.37583 -31.68248 -31.32076 -29.39019 -28.25875 -26.42185 -25.84185 -25.15027 -24.86906 -23.08456 -22.24777 -21.86539 -20.04061 -19.40957 -19.14149 -18.84722 -18.07792 -16.96743 -16.78745 -16.61774 -16.50914 -15.91541 -15.76641 -15.46464 -15.39375 -15.26061 -14.91304 -14.70762 -14.55431 -14.52089 -13.99061 -13.83529 -13.68176 -13.29014 -13.11016 -12.92781 -12.91064 -12.78212 -12.74791 -12.60392 -12.44344 -12.19875 -12.06376 -11.52467 -11.46311 -11.25971 -11.05076 -10.91469 -10.79096 -10.45586 -10.13969 -9.84495 -9.25828 -8.98848 -7.94625 -5.22680 -0.83192 -0.45279 0.80729 1.48077 1.48767 1.50491 1.56554 2.07013 2.19156 2.56298 3.01633 3.13790 3.37692 3.44156 3.54358 3.56332 3.72919 3.76559 3.80535 3.86154 3.95773 4.15303 4.19377 4.30039 4.34340 4.40138 4.41989 4.43191 4.56300 4.69553 4.74443 4.78292 4.91392 4.94655 4.96174 5.00966 5.03345 5.11434 5.17733 5.29595 5.36595 5.39269 5.40950 5.46910 5.50161 5.55860 5.67777 5.83264 6.28905 6.43319 6.75093 7.09458 7.33989 8.11782 8.33768 9.28317 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002041 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.810774 B =13717.229943 C =15066.245926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.044 3.956 3 C -0.222 4.222 4 C 0.565 3.435 5 O -0.559 6.559 6 N -0.714 5.714 7 C 0.142 3.858 8 C -0.104 4.104 9 C -0.154 4.154 10 C 0.143 3.857 11 N -0.720 5.720 12 C -0.242 4.242 13 H 0.076 0.924 14 C -0.076 4.076 15 N -0.969 5.969 16 Si 0.972 3.028 17 H -0.279 1.279 18 H -0.297 1.297 19 H -0.278 1.278 20 C -0.133 4.133 21 C 0.161 3.839 22 N -0.505 5.505 23 C 0.119 3.881 24 C -0.122 4.122 25 C -0.077 4.077 26 C -0.116 4.116 27 C -0.093 4.093 28 C -0.130 4.130 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.408 0.592 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.174 0.826 44 H 0.141 0.859 45 H 0.164 0.836 46 H 0.165 0.835 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 -28.589 -0.356 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.036 3.964 3 C -0.227 4.227 4 C 0.353 3.647 5 O -0.440 6.440 6 N -0.365 5.365 7 C 0.019 3.981 8 C -0.123 4.123 9 C -0.195 4.195 10 C 0.033 3.967 11 N -0.358 5.358 12 C -0.374 4.374 13 H 0.094 0.906 14 C -0.268 4.268 15 N -0.619 5.619 16 Si 0.801 3.199 17 H -0.205 1.205 18 H -0.223 1.223 19 H -0.204 1.204 20 C -0.172 4.172 21 C -0.013 4.013 22 N -0.213 5.213 23 C -0.001 4.001 24 C -0.141 4.141 25 C -0.097 4.097 26 C -0.133 4.133 27 C -0.111 4.111 28 C -0.132 4.132 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.191 0.809 44 H 0.159 0.841 45 H 0.182 0.818 46 H 0.183 0.817 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.603 -28.513 -0.286 31.176 hybrid contribution 0.886 1.088 0.043 1.404 sum -11.717 -27.425 -0.243 29.824 Atomic orbital electron populations 1.21157 0.87652 1.04575 1.04292 1.20960 0.98106 0.90610 0.86762 1.20756 0.95340 0.94100 1.12532 1.18058 0.86613 0.83832 0.76234 1.90704 1.14385 1.87513 1.51437 1.45939 1.11538 1.05660 1.73314 1.21361 0.94236 0.80336 1.02182 1.22505 0.98059 0.93791 0.97903 1.23747 1.00789 0.99220 0.95717 1.21437 0.86178 0.93267 0.95861 1.42294 1.18818 1.54791 1.19867 1.19630 0.99486 1.19083 0.99235 0.90591 1.25549 0.99539 1.03245 0.98487 1.69800 1.21271 1.50311 1.20519 0.85229 0.77711 0.79034 0.77890 1.20478 1.22316 1.20433 1.23334 0.99916 0.94655 0.99279 1.23248 0.90238 0.97084 0.90759 1.67963 1.40255 0.98181 1.14902 1.19461 0.90567 0.93044 0.97028 1.21065 1.01105 0.90254 1.01671 1.21443 0.95119 0.98380 0.94737 1.21419 0.94020 0.99648 0.98229 1.21437 1.01680 0.90290 0.97691 1.18935 0.93775 0.95025 1.05461 0.89396 0.88853 0.89443 0.75525 0.91355 0.90865 0.90083 0.88989 0.93450 0.92204 0.79354 0.94053 0.92370 0.87460 0.80866 0.84122 0.81847 0.81717 0.82486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 8.49 71.24 0.60 -1.53 16 2 C 0.04 0.95 5.99 -19.12 -0.11 0.84 16 3 C -0.22 -5.26 5.89 -20.00 -0.12 -5.38 16 4 C 0.56 14.40 7.71 86.76 0.67 15.07 16 5 O -0.56 -16.49 13.45 -3.92 -0.05 -16.54 16 6 N -0.71 -16.54 5.51 -466.04 -2.57 -19.10 16 7 C 0.14 3.40 5.50 86.38 0.47 3.88 16 8 C -0.10 -2.88 3.62 -10.27 -0.04 -2.91 16 9 C -0.15 -4.81 7.44 31.18 0.23 -4.58 16 10 C 0.14 5.36 4.57 45.57 0.21 5.57 16 11 N -0.72 -35.37 5.31 -320.17 -1.70 -37.07 16 12 C -0.24 -13.30 9.97 84.04 0.84 -12.46 16 13 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 14 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 15 N -0.97 -58.75 13.06 21.65 0.28 -58.46 16 16 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 C -0.13 -3.93 7.39 31.12 0.23 -3.70 16 21 C 0.16 3.74 10.67 85.41 0.91 4.66 16 22 N -0.50 -12.87 10.30 -187.68 -1.93 -14.80 16 23 C 0.12 2.69 6.61 40.29 0.27 2.96 16 24 C -0.12 -2.07 9.97 22.34 0.22 -1.85 16 25 C -0.08 -0.80 9.94 22.05 0.22 -0.58 16 26 C -0.12 -1.04 9.96 22.05 0.22 -0.82 16 27 C -0.09 -1.18 9.32 22.34 0.21 -0.98 16 28 C -0.13 -2.59 5.74 -21.29 -0.12 -2.71 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.06 6.21 -2.39 -0.01 1.04 16 31 H 0.09 1.90 5.93 -2.39 -0.01 1.89 16 32 H 0.41 8.41 6.53 -92.71 -0.61 7.80 16 33 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.07 1.74 7.88 -2.39 -0.02 1.72 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.09 2.45 7.92 -2.38 -0.02 2.43 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 39 H 0.37 19.71 7.90 -92.71 -0.73 18.98 16 40 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.11 2.57 8.10 -2.38 -0.02 2.55 16 43 H 0.17 3.31 6.42 -2.91 -0.02 3.29 16 44 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 45 H 0.16 0.61 8.06 -2.92 -0.02 0.59 16 46 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 47 H 0.16 1.20 6.30 -2.91 -0.02 1.18 16 Total: -1.00 -71.63 385.08 1.12 -70.51 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -0.32 Total: 35.95 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.38 Total: -8.41 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -5.92 Total: -129.44 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.05 Total: -16.54 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -71.63 1.12 -70.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091148336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.946 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds