Wall clock time and date at job start Tue Mar 31 2020 22:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48498 * 109.47539 * 270.00080 * 3 2 1 5 5 H 1.48504 * 109.47138 * 29.99949 * 3 2 1 6 6 H 1.48503 * 109.47291 * 149.99967 * 3 2 1 7 7 C 1.38811 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.53779 * 113.61668 * 154.99907 * 10 9 7 12 12 C 1.53782 * 87.08020 * 89.11150 * 11 10 9 13 13 C 1.53006 * 113.61406 * 139.98300 * 12 11 10 14 14 N 1.46501 * 109.47229 * 176.53165 * 13 12 11 15 15 C 1.34772 * 119.99943 * 179.97438 * 14 13 12 16 16 O 1.21583 * 120.00115 * 0.02562 * 15 14 13 17 17 C 1.47570 * 120.00077 * 179.72141 * 15 14 13 18 18 C 1.39654 * 120.19349 * 354.16502 * 17 15 14 19 19 C 1.37829 * 119.92108 * 179.97438 * 18 17 15 20 20 C 1.38535 * 120.30916 * 359.97438 * 19 18 17 21 21 C 1.38068 * 120.39532 * 0.02562 * 20 19 18 22 22 C 1.38773 * 120.06886 * 359.67281 * 21 20 19 23 23 N 1.39669 * 120.15302 * 180.32119 * 22 21 20 24 24 C 1.36647 * 125.67718 * 120.19712 * 23 22 21 25 25 C 1.34804 * 108.19342 * 179.82907 * 24 23 22 26 26 C 1.40988 * 107.48739 * 0.42678 * 25 24 23 27 27 C 1.34811 * 107.48375 * 359.73264 * 26 25 24 28 28 C 1.53781 * 87.17414 * 25.39356 * 12 11 10 29 29 H 0.97002 * 119.99379 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00122 * 359.97438 * 9 7 2 31 31 H 1.09003 * 112.85290 * 23.79961 * 10 9 7 32 32 H 1.09003 * 113.61212 * 334.56597 * 11 10 9 33 33 H 1.08998 * 113.61862 * 203.66344 * 11 10 9 34 34 H 1.08994 * 113.61905 * 270.79875 * 12 11 10 35 35 H 1.09001 * 109.47277 * 56.52951 * 13 12 11 36 36 H 1.09001 * 109.46743 * 296.53382 * 13 12 11 37 37 H 0.96998 * 120.00085 * 0.02562 * 14 13 12 38 38 H 1.08003 * 120.04135 * 359.97345 * 18 17 15 39 39 H 1.07998 * 119.84694 * 179.97438 * 19 18 17 40 40 H 1.08003 * 119.80153 * 180.02562 * 20 19 18 41 41 H 1.07997 * 119.96534 * 179.97438 * 21 20 19 42 42 H 1.08005 * 125.90458 * 0.02562 * 24 23 22 43 43 H 1.08000 * 126.25698 * 180.16074 * 25 24 23 44 44 H 1.07995 * 126.25941 * 179.71143 * 26 25 24 45 45 H 1.08001 * 125.90536 * 179.97438 * 27 26 25 46 46 H 1.08994 * 113.61737 * 89.15195 * 28 12 11 47 47 H 1.08993 * 113.61381 * 220.05824 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2601 -4.8288 0.5950 12 6 0.7203 -5.0790 -0.8231 13 6 0.6193 -6.5616 -1.1877 14 7 0.0207 -6.6976 -2.5179 15 6 -0.1672 -7.9214 -3.0503 16 8 0.1596 -8.9125 -2.4265 17 6 -0.7758 -8.0588 -4.3876 18 6 -1.2695 -6.9348 -5.0535 19 6 -1.8363 -7.0695 -6.3026 20 6 -1.9186 -8.3156 -6.9023 21 6 -1.4347 -9.4354 -6.2557 22 6 -0.8552 -9.3174 -5.0003 23 7 -0.3590 -10.4480 -4.3475 24 6 0.9352 -10.6357 -3.9511 25 6 1.0222 -11.8419 -3.3555 26 6 -0.2603 -12.4262 -3.3925 27 6 -1.0857 -11.5532 -4.0041 28 6 1.9976 -4.4015 -1.3467 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0002 31 1 3.0656 -3.5639 0.4048 32 1 0.4937 -4.5189 1.3055 33 1 1.8869 -5.6367 0.9725 34 1 -0.1912 -4.5251 -1.0474 35 1 -0.0035 -7.0744 -0.4548 36 1 1.6157 -7.0036 -1.1906 37 1 -0.2397 -5.9070 -3.0158 38 1 -1.2072 -5.9612 -4.5902 39 1 -2.2180 -6.1995 -6.8162 40 1 -2.3641 -8.4116 -7.8815 41 1 -1.5029 -10.4035 -6.7295 42 1 1.7472 -9.9370 -4.0882 43 1 1.9127 -12.2822 -2.9317 44 1 -0.5319 -13.3960 -3.0025 45 1 -2.1390 -11.7017 -4.1908 46 1 2.8265 -5.0923 -1.5010 47 1 1.8259 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091210877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:52 Heat of formation + Delta-G solvation = 91.042533 kcal Electronic energy + Delta-G solvation = -28251.694923 eV Core-core repulsion = 24401.875052 eV Total energy + Delta-G solvation = -3849.819871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74372 -39.95046 -38.90551 -38.21319 -34.81721 -33.40210 -33.16756 -31.85969 -30.15265 -29.14090 -28.76530 -27.37538 -25.10963 -24.34485 -23.61516 -23.21647 -21.78427 -20.89194 -20.26544 -20.09175 -18.83738 -18.35546 -17.64809 -17.24134 -16.42337 -15.68440 -15.48833 -15.31267 -15.13284 -14.88582 -14.27412 -14.20108 -14.05948 -13.71235 -13.58487 -13.45019 -13.38429 -12.92829 -12.75302 -12.40834 -12.32158 -12.27014 -12.03228 -11.95728 -11.85964 -11.43949 -11.08338 -10.87728 -10.53463 -10.24346 -10.17247 -9.86634 -9.73511 -9.66670 -9.54666 -9.51135 -9.04970 -8.92482 -8.46953 -8.01153 -7.04683 -5.85162 -3.14255 0.30468 0.68654 2.29072 2.63364 2.82987 3.02975 3.15623 3.38534 3.38771 3.44249 3.45741 4.28151 4.32985 4.50795 4.51902 4.76869 4.81951 4.83327 5.01255 5.01767 5.18039 5.19674 5.26664 5.34500 5.41091 5.49223 5.57129 5.64607 5.65717 5.73111 5.76470 5.83412 5.88734 5.92243 6.06266 6.17226 6.22252 6.29857 6.30680 6.32847 6.35093 6.54352 6.69226 6.85025 6.99403 7.00339 7.21431 7.40081 7.47629 7.65000 8.09909 8.34085 9.44813 10.02057 10.36284 11.37266 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.002228 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.084611 B =12565.447557 C =13781.632460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.133 3.867 14 N -0.717 5.717 15 C 0.544 3.456 16 O -0.515 6.515 17 C -0.133 4.133 18 C -0.073 4.073 19 C -0.121 4.121 20 C -0.082 4.082 21 C -0.126 4.126 22 C 0.175 3.825 23 N -0.403 5.403 24 C 0.048 3.952 25 C -0.207 4.207 26 C -0.189 4.189 27 C -0.017 4.017 28 C -0.168 4.168 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.156 0.844 46 H 0.067 0.933 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 -20.883 -13.916 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.010 3.990 14 N -0.369 5.369 15 C 0.330 3.670 16 O -0.391 6.391 17 C -0.137 4.137 18 C -0.092 4.092 19 C -0.139 4.139 20 C -0.101 4.101 21 C -0.145 4.145 22 C 0.083 3.917 23 N -0.077 5.077 24 C -0.079 4.079 25 C -0.230 4.230 26 C -0.214 4.214 27 C -0.143 4.143 28 C -0.209 4.209 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.173 0.827 46 H 0.086 0.914 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.859 -21.157 -13.532 25.409 hybrid contribution -0.143 1.413 -0.248 1.442 sum -4.002 -19.744 -13.780 24.407 Atomic orbital electron populations 1.69662 1.05143 1.25804 1.57481 1.24766 0.95551 0.97811 1.02765 0.86166 0.78695 0.83649 0.77535 1.21682 1.21735 1.20672 1.19293 0.91130 0.83958 1.42955 0.90981 1.42174 1.05672 0.99445 1.87131 1.21089 0.95131 0.85576 0.92673 1.23437 1.00505 0.99711 0.95041 1.22719 0.99579 0.92843 0.98762 1.21498 0.98052 0.97113 0.82298 1.45997 1.63311 1.07669 1.19919 1.18109 0.79433 0.83932 0.85508 1.90889 1.50115 1.36477 1.61632 1.20149 1.04332 0.93498 0.95759 1.21366 0.95481 0.97621 0.94762 1.21256 0.99368 0.98133 0.95190 1.21268 0.97133 0.91852 0.99868 1.21193 1.00142 1.00260 0.92885 1.17641 0.97292 0.85294 0.91520 1.41148 1.08546 1.12244 1.45789 1.21517 0.85247 0.98253 1.02860 1.20756 0.98238 0.96425 1.07603 1.20820 0.93791 1.00325 1.06444 1.21717 0.97482 0.87676 1.07431 1.23916 0.95651 0.99618 1.01762 0.93431 0.78130 0.91919 0.91287 0.90414 0.88944 0.91709 0.91411 0.76460 0.84497 0.84518 0.84613 0.84618 0.83243 0.84918 0.84867 0.82686 0.91402 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 9 N -0.71 -17.03 5.31 -52.55 -0.28 -17.31 16 10 C 0.17 3.19 4.57 -67.03 -0.31 2.89 16 11 C -0.15 -2.32 7.39 -25.92 -0.19 -2.51 16 12 C -0.12 -1.74 3.62 -89.80 -0.33 -2.07 16 13 C 0.13 1.76 5.50 -4.04 -0.02 1.74 16 14 N -0.72 -8.70 5.50 -61.34 -0.34 -9.04 16 15 C 0.54 7.31 7.60 -12.46 -0.09 7.22 16 16 O -0.51 -8.46 12.80 5.29 0.07 -8.40 16 17 C -0.13 -1.49 5.88 -104.82 -0.62 -2.10 16 18 C -0.07 -0.62 9.52 -39.20 -0.37 -0.99 16 19 C -0.12 -0.81 10.02 -39.62 -0.40 -1.21 16 20 C -0.08 -0.52 10.03 -39.53 -0.40 -0.92 16 21 C -0.13 -1.02 9.81 -39.45 -0.39 -1.41 16 22 C 0.17 1.93 5.82 -83.35 -0.48 1.45 16 23 N -0.40 -5.04 2.02 -60.69 -0.12 -5.16 16 24 C 0.05 0.64 8.16 -16.62 -0.14 0.51 16 25 C -0.21 -2.65 10.86 -39.76 -0.43 -3.09 16 26 C -0.19 -2.28 10.86 -39.76 -0.43 -2.71 16 27 C -0.02 -0.21 11.25 -16.62 -0.19 -0.39 16 28 C -0.17 -2.71 7.44 -25.82 -0.19 -2.90 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.38 9.81 7.90 -40.82 -0.32 9.49 16 31 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 37 H 0.40 4.14 6.54 -40.82 -0.27 3.88 16 38 H 0.14 0.96 6.45 -52.48 -0.34 0.62 16 39 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.15 1.90 8.05 -52.48 -0.42 1.48 16 43 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 47 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -32.73 391.35 -11.08 -43.80 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -6.79 Total: 13.70 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -5.22 Total: -13.67 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.01 Total: -58.21 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.73 -11.08 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091210877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.847 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds