Wall clock time and date at job start Tue Mar 31 2020 22:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48498 * 109.47539 * 270.00080 * 3 2 1 5 5 H 1.48504 * 109.47138 * 29.99949 * 3 2 1 6 6 H 1.48503 * 109.47291 * 149.99967 * 3 2 1 7 7 C 1.38811 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.53779 * 113.61668 * 154.99907 * 10 9 7 12 12 C 1.53782 * 87.08020 * 89.11150 * 11 10 9 13 13 C 1.53006 * 113.61406 * 139.98300 * 12 11 10 14 14 N 1.46501 * 109.47229 * 176.53165 * 13 12 11 15 15 C 1.34772 * 119.99943 * 179.97438 * 14 13 12 16 16 O 1.21583 * 120.00115 * 0.02562 * 15 14 13 17 17 C 1.47570 * 120.00077 * 179.72141 * 15 14 13 18 18 C 1.39654 * 120.19349 * 354.16502 * 17 15 14 19 19 C 1.37829 * 119.92108 * 179.97438 * 18 17 15 20 20 C 1.38535 * 120.30916 * 359.97438 * 19 18 17 21 21 C 1.38068 * 120.39532 * 0.02562 * 20 19 18 22 22 C 1.38773 * 120.06886 * 359.67281 * 21 20 19 23 23 N 1.39669 * 120.15302 * 180.32119 * 22 21 20 24 24 C 1.36647 * 125.67718 * 120.19712 * 23 22 21 25 25 C 1.34804 * 108.19342 * 179.82907 * 24 23 22 26 26 C 1.40988 * 107.48739 * 0.42678 * 25 24 23 27 27 C 1.34811 * 107.48375 * 359.73264 * 26 25 24 28 28 C 1.53781 * 87.17414 * 25.39356 * 12 11 10 29 29 H 0.97002 * 119.99379 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00122 * 359.97438 * 9 7 2 31 31 H 1.09003 * 112.85290 * 23.79961 * 10 9 7 32 32 H 1.09003 * 113.61212 * 334.56597 * 11 10 9 33 33 H 1.08998 * 113.61862 * 203.66344 * 11 10 9 34 34 H 1.08994 * 113.61905 * 270.79875 * 12 11 10 35 35 H 1.09001 * 109.47277 * 56.52951 * 13 12 11 36 36 H 1.09001 * 109.46743 * 296.53382 * 13 12 11 37 37 H 0.96998 * 120.00085 * 0.02562 * 14 13 12 38 38 H 1.08003 * 120.04135 * 359.97345 * 18 17 15 39 39 H 1.07998 * 119.84694 * 179.97438 * 19 18 17 40 40 H 1.08003 * 119.80153 * 180.02562 * 20 19 18 41 41 H 1.07997 * 119.96534 * 179.97438 * 21 20 19 42 42 H 1.08005 * 125.90458 * 0.02562 * 24 23 22 43 43 H 1.08000 * 126.25698 * 180.16074 * 25 24 23 44 44 H 1.07995 * 126.25941 * 179.71143 * 26 25 24 45 45 H 1.08001 * 125.90536 * 179.97438 * 27 26 25 46 46 H 1.08994 * 113.61737 * 89.15195 * 28 12 11 47 47 H 1.08993 * 113.61381 * 220.05824 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2601 -4.8288 0.5950 12 6 0.7203 -5.0790 -0.8231 13 6 0.6193 -6.5616 -1.1877 14 7 0.0207 -6.6976 -2.5179 15 6 -0.1672 -7.9214 -3.0503 16 8 0.1596 -8.9125 -2.4265 17 6 -0.7758 -8.0588 -4.3876 18 6 -1.2695 -6.9348 -5.0535 19 6 -1.8363 -7.0695 -6.3026 20 6 -1.9186 -8.3156 -6.9023 21 6 -1.4347 -9.4354 -6.2557 22 6 -0.8552 -9.3174 -5.0003 23 7 -0.3590 -10.4480 -4.3475 24 6 0.9352 -10.6357 -3.9511 25 6 1.0222 -11.8419 -3.3555 26 6 -0.2603 -12.4262 -3.3925 27 6 -1.0857 -11.5532 -4.0041 28 6 1.9976 -4.4015 -1.3467 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0002 31 1 3.0656 -3.5639 0.4048 32 1 0.4937 -4.5189 1.3055 33 1 1.8869 -5.6367 0.9725 34 1 -0.1912 -4.5251 -1.0474 35 1 -0.0035 -7.0744 -0.4548 36 1 1.6157 -7.0036 -1.1906 37 1 -0.2397 -5.9070 -3.0158 38 1 -1.2072 -5.9612 -4.5902 39 1 -2.2180 -6.1995 -6.8162 40 1 -2.3641 -8.4116 -7.8815 41 1 -1.5029 -10.4035 -6.7295 42 1 1.7472 -9.9370 -4.0882 43 1 1.9127 -12.2822 -2.9317 44 1 -0.5319 -13.3960 -3.0025 45 1 -2.1390 -11.7017 -4.1908 46 1 2.8265 -5.0923 -1.5010 47 1 1.8259 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091210877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:51 Heat of formation + Delta-G solvation = 73.134890 kcal Electronic energy + Delta-G solvation = -28252.471457 eV Core-core repulsion = 24401.875052 eV Total energy + Delta-G solvation = -3850.596405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58404 -40.94747 -40.03867 -39.18764 -36.09289 -35.05684 -34.01363 -32.72211 -31.87944 -29.92069 -29.66569 -28.62779 -26.46370 -25.83156 -24.84259 -23.97746 -23.07865 -21.85022 -21.12516 -20.96313 -19.98432 -19.50613 -19.23904 -18.41783 -17.37271 -16.75650 -16.50278 -16.33827 -16.22050 -15.91351 -15.76735 -15.48413 -15.07751 -14.81956 -14.65124 -14.55539 -14.41638 -14.29257 -13.81966 -13.47818 -13.29386 -13.17914 -13.03079 -12.96499 -12.93327 -12.89983 -12.63962 -12.44315 -12.17506 -12.08223 -11.57297 -11.50004 -11.09583 -10.92498 -10.78117 -10.36193 -10.29482 -10.01947 -9.30481 -9.00888 -8.94074 -7.96141 -5.24370 -0.40813 0.07008 1.42875 1.48038 1.48816 1.57413 1.78077 2.00247 2.09981 2.21901 2.55226 2.65560 3.36398 3.53471 3.64949 3.70412 3.76542 3.86238 3.98023 4.01424 4.12964 4.23890 4.26904 4.30151 4.31787 4.37071 4.52540 4.65041 4.67885 4.70931 4.76499 4.85000 4.90665 4.96654 5.06677 5.09294 5.19178 5.24135 5.32312 5.32326 5.38404 5.41397 5.45611 5.52257 5.63798 5.68060 6.09685 6.27600 6.31393 6.43923 6.63146 7.11754 7.32792 8.09372 8.32047 9.27080 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.002228 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.084611 B =12565.447557 C =13781.632460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.145 3.855 11 C -0.135 4.135 12 C -0.102 4.102 13 C 0.145 3.855 14 N -0.712 5.712 15 C 0.541 3.459 16 O -0.551 6.551 17 C -0.157 4.157 18 C -0.076 4.076 19 C -0.116 4.116 20 C -0.068 4.068 21 C -0.126 4.126 22 C 0.147 3.853 23 N -0.404 5.404 24 C 0.030 3.970 25 C -0.223 4.223 26 C -0.205 4.205 27 C -0.023 4.023 28 C -0.152 4.152 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.409 0.591 38 H 0.148 0.852 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.150 0.850 45 H 0.178 0.822 46 H 0.089 0.911 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 -21.218 -15.783 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.035 3.965 11 C -0.174 4.174 12 C -0.121 4.121 13 C 0.021 3.979 14 N -0.364 5.364 15 C 0.329 3.671 16 O -0.431 6.431 17 C -0.161 4.161 18 C -0.095 4.095 19 C -0.133 4.133 20 C -0.087 4.087 21 C -0.145 4.145 22 C 0.055 3.945 23 N -0.078 5.078 24 C -0.098 4.098 25 C -0.247 4.247 26 C -0.230 4.230 27 C -0.149 4.149 28 C -0.193 4.193 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.246 0.754 38 H 0.165 0.835 39 H 0.184 0.816 40 H 0.189 0.811 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.195 0.805 46 H 0.108 0.892 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.202 -21.507 -15.418 26.794 hybrid contribution -0.021 1.477 0.279 1.503 sum -4.223 -20.030 -15.139 25.460 Atomic orbital electron populations 1.69808 1.06523 1.26070 1.59499 1.25536 0.96386 1.01000 1.03752 0.85163 0.77704 0.79603 0.77430 1.21359 1.22327 1.19558 1.19661 0.91506 0.85174 1.41051 0.90616 1.42294 1.05321 1.00511 1.87605 1.21404 0.95031 0.84893 0.95186 1.23345 0.99991 0.98702 0.95396 1.22494 0.98454 0.93452 0.97658 1.21273 0.98054 0.95676 0.82877 1.45909 1.62990 1.07955 1.19512 1.18520 0.78820 0.83479 0.86269 1.90866 1.51824 1.37550 1.62826 1.20073 1.06214 0.94677 0.95121 1.21573 0.95202 0.97197 0.95536 1.21654 0.97964 0.99449 0.94276 1.21710 0.95276 0.90871 1.00802 1.21420 0.99521 1.01711 0.91818 1.17998 0.98815 0.84832 0.92815 1.41268 1.08201 1.12763 1.45561 1.21563 0.85946 0.98454 1.03799 1.21020 0.99115 0.96708 1.07889 1.21115 0.93566 1.01324 1.06955 1.22167 0.98472 0.87448 1.06847 1.23725 0.97159 0.99160 0.99208 0.94004 0.79325 0.92241 0.92355 0.87808 0.89907 0.92198 0.91450 0.75410 0.83461 0.81584 0.81054 0.83337 0.83791 0.84235 0.83207 0.80498 0.89225 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.86 13.06 21.65 0.28 -57.58 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.24 -13.13 9.97 84.03 0.84 -12.29 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -35.00 5.31 -320.16 -1.70 -36.70 16 10 C 0.14 5.45 4.57 45.58 0.21 5.65 16 11 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 12 C -0.10 -2.86 3.62 -10.27 -0.04 -2.90 16 13 C 0.14 3.70 5.50 86.38 0.47 4.17 16 14 N -0.71 -16.86 5.50 -466.23 -2.57 -19.43 16 15 C 0.54 14.55 7.60 86.71 0.66 15.21 16 16 O -0.55 -18.51 12.80 -3.98 -0.05 -18.56 16 17 C -0.16 -3.39 5.88 -20.00 -0.12 -3.51 16 18 C -0.08 -1.14 9.52 22.51 0.21 -0.93 16 19 C -0.12 -1.15 10.02 22.24 0.22 -0.92 16 20 C -0.07 -0.61 10.03 22.30 0.22 -0.39 16 21 C -0.13 -1.77 9.81 22.36 0.22 -1.55 16 22 C 0.15 3.14 5.82 38.50 0.22 3.36 16 23 N -0.40 -10.11 2.02 -345.92 -0.70 -10.81 16 24 C 0.03 0.83 8.16 83.15 0.68 1.51 16 25 C -0.22 -5.91 10.86 22.16 0.24 -5.67 16 26 C -0.21 -4.95 10.86 22.16 0.24 -4.71 16 27 C -0.02 -0.54 11.25 83.16 0.94 0.40 16 28 C -0.15 -4.73 7.44 31.18 0.23 -4.49 16 29 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.37 19.49 7.90 -92.71 -0.73 18.76 16 31 H 0.06 2.25 8.10 -2.39 -0.02 2.24 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.77 7.87 -2.39 -0.02 1.75 16 37 H 0.41 8.11 6.54 -92.71 -0.61 7.50 16 38 H 0.15 1.79 6.45 -2.91 -0.02 1.77 16 39 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 40 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 42 H 0.14 3.90 8.05 -2.91 -0.02 3.88 16 43 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 45 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 46 H 0.09 2.43 7.92 -2.39 -0.02 2.41 16 47 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -72.23 391.35 3.10 -69.13 By element: Atomic # 1 Polarization: 41.71 SS G_CDS: -0.35 Total: 41.36 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 6.15 Total: -14.65 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -4.68 Total: -124.51 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.05 Total: -18.56 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.23 3.10 -69.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091210877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.263 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds