Wall clock time and date at job start Tue Mar 31 2020 22:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48495 * 109.47396 * 240.00240 * 3 2 1 5 5 H 1.48498 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46818 * 120.00263 * 3 2 1 7 7 C 1.38811 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99962 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00099 * 179.97438 * 9 7 2 11 11 C 1.53775 * 113.61838 * 154.99797 * 10 9 7 12 12 C 1.53779 * 87.08374 * 89.11433 * 11 10 9 13 13 C 1.53001 * 113.61341 * 139.98274 * 12 11 10 14 14 N 1.46497 * 109.46964 * 176.53316 * 13 12 11 15 15 C 1.34776 * 120.00337 * 180.02562 * 14 13 12 16 16 O 1.21739 * 119.99329 * 359.97438 * 15 14 13 17 17 C 1.46389 * 120.00534 * 179.97438 * 15 14 13 18 18 N 1.37636 * 126.32725 * 0.02781 * 17 15 14 19 19 H 0.96999 * 125.54594 * 359.97438 * 18 17 15 20 20 C 1.35642 * 108.90005 * 179.97438 * 18 17 15 21 21 C 1.35118 * 109.21914 * 0.23020 * 20 18 17 22 22 C 1.39096 * 126.32992 * 180.02562 * 17 15 14 23 23 C 1.48175 * 126.63252 * 0.02562 * 22 17 15 24 24 C 1.39452 * 120.12987 * 309.71824 * 23 22 17 25 25 C 1.37989 * 119.86651 * 179.71705 * 24 23 22 26 26 C 1.38347 * 120.12924 * 0.54106 * 25 24 23 27 27 C 1.38344 * 120.26830 * 359.76268 * 26 25 24 28 28 C 1.37990 * 120.12825 * 359.95257 * 27 26 25 29 29 C 1.53788 * 87.17002 * 25.39243 * 12 11 10 30 30 H 0.97004 * 119.99758 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99925 * 359.97438 * 9 7 2 32 32 H 1.08999 * 112.85079 * 23.79841 * 10 9 7 33 33 H 1.09007 * 113.61479 * 334.56608 * 11 10 9 34 34 H 1.09003 * 113.61957 * 203.66718 * 11 10 9 35 35 H 1.08999 * 113.61237 * 270.80497 * 12 11 10 36 36 H 1.08998 * 109.46802 * 56.53082 * 13 12 11 37 37 H 1.09001 * 109.46912 * 296.52944 * 13 12 11 38 38 H 0.97001 * 120.00311 * 359.97438 * 14 13 12 39 39 H 1.08002 * 125.38596 * 179.97438 * 20 18 17 40 40 H 1.08004 * 126.09614 * 179.73823 * 21 20 18 41 41 H 1.07996 * 120.06693 * 359.97438 * 24 23 22 42 42 H 1.08001 * 119.93803 * 180.27511 * 25 24 23 43 43 H 1.08002 * 119.86368 * 179.73528 * 26 25 24 44 44 H 1.07994 * 119.93230 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.06244 * 180.02562 * 28 27 26 46 46 H 1.08995 * 113.61199 * 89.15680 * 29 12 11 47 47 H 1.08998 * 113.61122 * 220.05765 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 6 1.2600 -4.8293 0.5917 12 6 0.7202 -5.0784 -0.8265 13 6 0.6193 -6.5606 -1.1923 14 7 0.0207 -6.6955 -2.5226 15 6 -0.1681 -7.9189 -3.0557 16 8 0.1591 -8.9117 -2.4319 17 6 -0.7668 -8.0538 -4.3848 18 7 -1.1821 -7.0257 -5.2001 19 1 -1.1271 -6.0807 -4.9884 20 6 -1.6808 -7.5492 -6.3478 21 6 -1.6027 -8.8969 -6.2927 22 6 -1.0210 -9.2447 -5.0570 23 6 -0.7392 -10.6143 -4.5667 24 6 0.5224 -10.9324 -4.0647 25 6 0.7771 -12.2079 -3.6041 26 6 -0.2128 -13.1734 -3.6500 27 6 -1.4643 -12.8655 -4.1527 28 6 -1.7327 -11.5919 -4.6108 29 6 1.9976 -4.4003 -1.3495 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0016 32 1 3.0655 -3.5643 0.4027 33 1 0.4937 -4.5201 1.3026 34 1 1.8869 -5.6376 0.9686 35 1 -0.1913 -4.5241 -1.0503 36 1 -0.0035 -7.0740 -0.4598 37 1 1.6157 -7.0026 -1.1957 38 1 -0.2404 -5.9045 -3.0195 39 1 -2.0811 -6.9790 -7.1731 40 1 -1.9269 -9.5850 -7.0595 41 1 1.2972 -10.1808 -4.0327 42 1 1.7524 -12.4543 -3.2110 43 1 -0.0074 -14.1715 -3.2923 44 1 -2.2329 -13.6235 -4.1863 45 1 -2.7102 -11.3526 -5.0026 46 1 2.8264 -5.0910 -1.5044 47 1 1.8258 -3.7453 -2.2036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091318517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:10 Heat of formation + Delta-G solvation = 63.605648 kcal Electronic energy + Delta-G solvation = -27845.194397 eV Core-core repulsion = 23994.184773 eV Total energy + Delta-G solvation = -3851.009624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57121 -39.40297 -38.81109 -38.34802 -34.78615 -33.31729 -32.65011 -30.93718 -30.59504 -29.98466 -28.91979 -27.16196 -25.12791 -23.97407 -23.33773 -22.55067 -22.16995 -21.63918 -20.66484 -19.54173 -19.17324 -18.25638 -17.32488 -16.72192 -16.01298 -15.87693 -15.58110 -15.06771 -14.98172 -14.79758 -14.39139 -14.20551 -13.96377 -13.81379 -13.58112 -13.38919 -13.15336 -13.06152 -12.94490 -12.88612 -12.38479 -12.31077 -11.98466 -11.46237 -11.21904 -11.10136 -11.07314 -10.88140 -10.55668 -10.32645 -10.24474 -9.92162 -9.74982 -9.56439 -9.49052 -9.12314 -8.94279 -8.86396 -8.69458 -8.13289 -7.06591 -5.86673 -3.15900 0.93018 1.46666 1.57040 2.51134 2.80823 3.09484 3.25874 3.37953 3.42767 3.43464 3.86377 4.50387 4.61126 4.70352 4.84326 4.90883 4.98120 4.98994 5.02141 5.12304 5.13586 5.18346 5.39288 5.46344 5.50530 5.55185 5.58055 5.64410 5.80179 5.84930 5.90608 5.99810 6.04179 6.07262 6.15330 6.29504 6.30872 6.32570 6.45732 6.51883 6.53385 6.59950 6.66659 6.70900 6.83012 6.97226 7.00671 7.07773 7.42901 7.62970 8.10761 8.32475 9.43150 10.00305 10.34512 11.35604 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002034 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.142504 B =13761.682897 C =14743.867951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.133 3.867 14 N -0.725 5.725 15 C 0.581 3.419 16 O -0.521 6.521 17 C -0.039 4.039 18 N -0.537 5.537 19 H 0.420 0.580 20 C 0.025 3.975 21 C -0.197 4.197 22 C -0.046 4.046 23 C -0.017 4.017 24 C -0.064 4.064 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.130 4.130 28 C -0.106 4.106 29 C -0.169 4.169 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.395 0.605 39 H 0.173 0.827 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -22.093 -12.674 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.010 3.990 14 N -0.376 5.376 15 C 0.368 3.632 16 O -0.397 6.397 17 C -0.153 4.153 18 N -0.133 5.133 19 H 0.258 0.742 20 C -0.110 4.110 21 C -0.221 4.221 22 C -0.055 4.055 23 C -0.017 4.017 24 C -0.082 4.082 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.148 4.148 28 C -0.124 4.124 29 C -0.210 4.210 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.228 0.772 39 H 0.190 0.810 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.275 -22.448 -12.095 25.708 hybrid contribution -0.131 1.888 -0.261 1.911 sum -3.406 -20.560 -12.356 24.228 Atomic orbital electron populations 1.69648 1.05144 1.25935 1.57366 1.24767 0.95556 0.97821 1.02724 0.86237 0.78521 0.83313 0.77924 1.21220 1.21668 1.21151 1.19247 0.91105 0.83965 1.43138 0.91026 1.42164 1.05654 0.99438 1.87149 1.21088 0.95149 0.85584 0.92658 1.23437 1.00508 0.99715 0.95023 1.22719 0.99515 0.92884 0.98806 1.21498 0.98113 0.97100 0.82247 1.45978 1.63960 1.07428 1.20184 1.17003 0.78625 0.83766 0.83837 1.90885 1.50970 1.36764 1.61037 1.20518 1.12613 0.87825 0.94339 1.42016 1.47893 1.08699 1.14689 0.74238 1.21934 1.03666 0.94720 0.90708 1.20896 1.08306 0.94381 0.98549 1.18557 1.02098 0.90436 0.94420 1.18077 0.93798 0.90681 0.99155 1.21113 0.96081 0.95767 0.95247 1.21032 0.99355 0.93449 1.00478 1.21139 0.93647 0.99173 0.99996 1.20968 0.97003 0.96458 1.00374 1.21114 0.98463 0.92775 1.00055 1.23920 0.95682 0.99614 1.01746 0.93374 0.78145 0.91906 0.91277 0.90376 0.89027 0.91602 0.91330 0.77212 0.80972 0.83733 0.86333 0.86334 0.86527 0.86354 0.86281 0.91365 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -16.94 5.31 -52.55 -0.28 -17.21 16 10 C 0.17 3.17 4.57 -67.03 -0.31 2.86 16 11 C -0.15 -2.29 7.39 -25.92 -0.19 -2.48 16 12 C -0.12 -1.72 3.62 -89.80 -0.33 -2.05 16 13 C 0.13 1.73 5.50 -4.04 -0.02 1.71 16 14 N -0.72 -8.63 5.55 -61.71 -0.34 -8.97 16 15 C 0.58 7.84 7.76 -12.98 -0.10 7.74 16 16 O -0.52 -8.49 13.42 5.15 0.07 -8.42 16 17 C -0.04 -0.46 7.07 -81.66 -0.58 -1.04 16 18 N -0.54 -4.50 5.98 -9.24 -0.06 -4.56 16 19 H 0.42 2.52 8.18 -40.82 -0.33 2.18 16 20 C 0.02 0.19 11.86 -16.98 -0.20 -0.02 16 21 C -0.20 -1.82 10.73 -39.67 -0.43 -2.24 16 22 C -0.05 -0.55 5.67 -104.48 -0.59 -1.14 16 23 C -0.02 -0.21 5.27 -104.91 -0.55 -0.76 16 24 C -0.06 -0.82 7.63 -39.22 -0.30 -1.12 16 25 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 26 C -0.12 -1.23 10.04 -39.50 -0.40 -1.63 16 27 C -0.13 -1.30 10.03 -39.63 -0.40 -1.70 16 28 C -0.11 -1.16 9.73 -39.22 -0.38 -1.55 16 29 C -0.17 -2.68 7.44 -25.82 -0.19 -2.88 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.38 9.76 7.90 -40.82 -0.32 9.44 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 38 H 0.39 3.93 7.60 -40.82 -0.31 3.62 16 39 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 41 H 0.12 1.60 7.35 -52.49 -0.39 1.22 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -32.74 394.09 -11.36 -44.10 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -6.79 Total: 14.18 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -5.61 Total: -15.25 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.05 Total: -57.35 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.42 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.74 -11.36 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091318517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.707 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds