Wall clock time and date at job start Tue Mar 31 2020 22:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48495 * 109.47396 * 240.00240 * 3 2 1 5 5 H 1.48498 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46818 * 120.00263 * 3 2 1 7 7 C 1.38811 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99962 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00099 * 179.97438 * 9 7 2 11 11 C 1.53775 * 113.61838 * 154.99797 * 10 9 7 12 12 C 1.53779 * 87.08374 * 89.11433 * 11 10 9 13 13 C 1.53001 * 113.61341 * 139.98274 * 12 11 10 14 14 N 1.46497 * 109.46964 * 176.53316 * 13 12 11 15 15 C 1.34776 * 120.00337 * 180.02562 * 14 13 12 16 16 O 1.21739 * 119.99329 * 359.97438 * 15 14 13 17 17 C 1.46389 * 120.00534 * 179.97438 * 15 14 13 18 18 N 1.37636 * 126.32725 * 0.02781 * 17 15 14 19 19 H 0.96999 * 125.54594 * 359.97438 * 18 17 15 20 20 C 1.35642 * 108.90005 * 179.97438 * 18 17 15 21 21 C 1.35118 * 109.21914 * 0.23020 * 20 18 17 22 22 C 1.39096 * 126.32992 * 180.02562 * 17 15 14 23 23 C 1.48175 * 126.63252 * 0.02562 * 22 17 15 24 24 C 1.39452 * 120.12987 * 309.71824 * 23 22 17 25 25 C 1.37989 * 119.86651 * 179.71705 * 24 23 22 26 26 C 1.38347 * 120.12924 * 0.54106 * 25 24 23 27 27 C 1.38344 * 120.26830 * 359.76268 * 26 25 24 28 28 C 1.37990 * 120.12825 * 359.95257 * 27 26 25 29 29 C 1.53788 * 87.17002 * 25.39243 * 12 11 10 30 30 H 0.97004 * 119.99758 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99925 * 359.97438 * 9 7 2 32 32 H 1.08999 * 112.85079 * 23.79841 * 10 9 7 33 33 H 1.09007 * 113.61479 * 334.56608 * 11 10 9 34 34 H 1.09003 * 113.61957 * 203.66718 * 11 10 9 35 35 H 1.08999 * 113.61237 * 270.80497 * 12 11 10 36 36 H 1.08998 * 109.46802 * 56.53082 * 13 12 11 37 37 H 1.09001 * 109.46912 * 296.52944 * 13 12 11 38 38 H 0.97001 * 120.00311 * 359.97438 * 14 13 12 39 39 H 1.08002 * 125.38596 * 179.97438 * 20 18 17 40 40 H 1.08004 * 126.09614 * 179.73823 * 21 20 18 41 41 H 1.07996 * 120.06693 * 359.97438 * 24 23 22 42 42 H 1.08001 * 119.93803 * 180.27511 * 25 24 23 43 43 H 1.08002 * 119.86368 * 179.73528 * 26 25 24 44 44 H 1.07994 * 119.93230 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.06244 * 180.02562 * 28 27 26 46 46 H 1.08995 * 113.61199 * 89.15680 * 29 12 11 47 47 H 1.08998 * 113.61122 * 220.05765 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 6 1.2600 -4.8293 0.5917 12 6 0.7202 -5.0784 -0.8265 13 6 0.6193 -6.5606 -1.1923 14 7 0.0207 -6.6955 -2.5226 15 6 -0.1681 -7.9189 -3.0557 16 8 0.1591 -8.9117 -2.4319 17 6 -0.7668 -8.0538 -4.3848 18 7 -1.1821 -7.0257 -5.2001 19 1 -1.1271 -6.0807 -4.9884 20 6 -1.6808 -7.5492 -6.3478 21 6 -1.6027 -8.8969 -6.2927 22 6 -1.0210 -9.2447 -5.0570 23 6 -0.7392 -10.6143 -4.5667 24 6 0.5224 -10.9324 -4.0647 25 6 0.7771 -12.2079 -3.6041 26 6 -0.2128 -13.1734 -3.6500 27 6 -1.4643 -12.8655 -4.1527 28 6 -1.7327 -11.5919 -4.6108 29 6 1.9976 -4.4003 -1.3495 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0016 32 1 3.0655 -3.5643 0.4027 33 1 0.4937 -4.5201 1.3026 34 1 1.8869 -5.6376 0.9686 35 1 -0.1913 -4.5241 -1.0503 36 1 -0.0035 -7.0740 -0.4598 37 1 1.6157 -7.0026 -1.1957 38 1 -0.2404 -5.9045 -3.0195 39 1 -2.0811 -6.9790 -7.1731 40 1 -1.9269 -9.5850 -7.0595 41 1 1.2972 -10.1808 -4.0327 42 1 1.7524 -12.4543 -3.2110 43 1 -0.0074 -14.1715 -3.2923 44 1 -2.2329 -13.6235 -4.1863 45 1 -2.7102 -11.3526 -5.0026 46 1 2.8264 -5.0910 -1.5044 47 1 1.8258 -3.7453 -2.2036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091318517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:09 Heat of formation + Delta-G solvation = 43.944184 kcal Electronic energy + Delta-G solvation = -27846.046982 eV Core-core repulsion = 23994.184773 eV Total energy + Delta-G solvation = -3851.862209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32977 -40.55688 -39.63380 -39.55630 -36.07167 -35.02489 -33.46027 -32.18146 -31.73687 -31.02444 -29.83005 -28.34062 -26.46824 -25.75754 -24.36381 -23.36153 -23.29080 -22.66950 -21.40893 -20.51673 -20.08426 -19.55164 -19.23527 -17.54337 -17.03897 -16.86804 -16.62134 -16.54986 -15.89172 -15.87724 -15.64116 -15.54846 -15.06878 -14.86758 -14.67185 -14.46301 -14.32278 -14.17580 -13.86551 -13.66460 -13.65055 -13.30801 -13.14297 -12.94283 -12.93586 -12.64163 -12.21643 -12.09854 -11.99683 -11.87947 -11.61422 -11.51071 -11.18978 -10.95023 -10.80546 -10.28641 -10.17303 -9.69837 -9.41771 -9.01733 -8.94404 -7.96847 -5.25108 0.08371 0.62853 0.77004 1.47171 1.49337 1.55453 1.81370 2.04675 2.22139 2.31549 2.54497 3.03316 3.35549 3.67527 3.75624 3.76126 3.89299 3.99591 4.11933 4.13506 4.19367 4.29591 4.31785 4.35091 4.36475 4.43541 4.67725 4.70511 4.73670 4.79354 4.81760 4.90519 4.96492 5.08489 5.15647 5.20426 5.23912 5.27095 5.31570 5.44261 5.51441 5.56806 5.63063 5.68710 5.71374 5.79976 5.90994 6.20480 6.26605 6.41928 6.56664 7.12380 7.31875 8.08667 8.31229 9.26009 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002034 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.142504 B =13761.682897 C =14743.867951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.144 3.856 11 C -0.135 4.135 12 C -0.102 4.102 13 C 0.144 3.856 14 N -0.718 5.718 15 C 0.579 3.421 16 O -0.556 6.556 17 C -0.070 4.070 18 N -0.528 5.528 19 H 0.431 0.569 20 C 0.049 3.951 21 C -0.214 4.214 22 C -0.062 4.062 23 C -0.035 4.035 24 C -0.085 4.085 25 C -0.138 4.138 26 C -0.126 4.126 27 C -0.131 4.131 28 C -0.115 4.115 29 C -0.152 4.152 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.404 0.596 39 H 0.215 0.785 40 H 0.161 0.839 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.133 0.867 46 H 0.090 0.910 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 -23.049 -13.995 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.034 3.966 11 C -0.174 4.174 12 C -0.120 4.120 13 C 0.020 3.980 14 N -0.369 5.369 15 C 0.367 3.633 16 O -0.435 6.435 17 C -0.183 4.183 18 N -0.125 5.125 19 H 0.271 0.729 20 C -0.087 4.087 21 C -0.237 4.237 22 C -0.071 4.071 23 C -0.036 4.036 24 C -0.104 4.104 25 C -0.156 4.156 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.133 4.133 29 C -0.193 4.193 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.239 0.761 39 H 0.232 0.768 40 H 0.179 0.821 41 H 0.118 0.882 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.164 0.836 45 H 0.151 0.849 46 H 0.108 0.892 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.423 -23.412 -13.422 27.203 hybrid contribution -0.052 2.089 0.109 2.092 sum -3.475 -21.323 -13.313 25.377 Atomic orbital electron populations 1.69797 1.06506 1.26134 1.59403 1.25540 0.96396 1.01016 1.03736 0.85229 0.77201 0.79269 0.78159 1.20396 1.22259 1.20543 1.19625 0.91505 0.85192 1.41206 0.90627 1.42284 1.05299 1.00504 1.87629 1.21410 0.95054 0.84910 0.95201 1.23346 0.99988 0.98697 0.95374 1.22491 0.98363 0.93504 0.97688 1.21298 0.98213 0.95668 0.82784 1.45858 1.63639 1.07606 1.19810 1.17263 0.78153 0.83442 0.84403 1.90857 1.52620 1.37832 1.62166 1.20260 1.14791 0.88931 0.94348 1.42033 1.47186 1.08790 1.14465 0.72945 1.22616 1.00943 0.94501 0.90621 1.21180 1.08774 0.95648 0.98091 1.18863 1.02379 0.90296 0.95608 1.18340 0.94029 0.91660 0.99568 1.21099 0.96239 0.96156 0.96886 1.21271 1.00447 0.93329 1.00547 1.21472 0.93386 1.00008 0.99489 1.21349 0.97614 0.96693 0.99209 1.21368 0.98767 0.93010 1.00204 1.23729 0.97215 0.99158 0.99171 0.94016 0.79344 0.92241 0.92362 0.87694 0.90008 0.91924 0.91259 0.76060 0.76842 0.82141 0.88196 0.85296 0.83980 0.83618 0.84864 0.89186 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.66 13.06 21.65 0.28 -57.38 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.24 -13.16 9.97 84.03 0.84 -12.32 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.82 5.31 -320.18 -1.70 -36.52 16 10 C 0.14 5.38 4.57 45.58 0.21 5.59 16 11 C -0.13 -4.04 7.39 31.12 0.23 -3.81 16 12 C -0.10 -2.81 3.62 -10.27 -0.04 -2.85 16 13 C 0.14 3.60 5.50 86.38 0.47 4.07 16 14 N -0.72 -16.76 5.55 -467.34 -2.59 -19.35 16 15 C 0.58 15.78 7.76 86.36 0.67 16.45 16 16 O -0.56 -18.70 13.42 -4.47 -0.06 -18.76 16 17 C -0.07 -1.62 7.07 40.56 0.29 -1.33 16 18 N -0.53 -7.97 5.98 -183.14 -1.10 -9.06 16 19 H 0.43 4.36 8.18 -92.71 -0.76 3.60 16 20 C 0.05 0.60 11.86 83.39 0.99 1.59 16 21 C -0.21 -3.58 10.73 22.21 0.24 -3.34 16 22 C -0.06 -1.46 5.67 -19.77 -0.11 -1.58 16 23 C -0.04 -0.90 5.27 -20.05 -0.11 -1.01 16 24 C -0.09 -2.30 7.63 22.50 0.17 -2.13 16 25 C -0.14 -3.16 10.03 22.24 0.22 -2.94 16 26 C -0.13 -2.41 10.04 22.32 0.22 -2.18 16 27 C -0.13 -2.42 10.03 22.24 0.22 -2.20 16 28 C -0.12 -2.46 9.73 22.50 0.22 -2.24 16 29 C -0.15 -4.68 7.44 31.18 0.23 -4.45 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.37 19.39 7.90 -92.71 -0.73 18.66 16 32 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 33 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.76 7.87 -2.39 -0.02 1.75 16 38 H 0.40 7.72 7.60 -92.71 -0.70 7.02 16 39 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.10 2.94 7.35 -2.91 -0.02 2.92 16 42 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 46 H 0.09 2.40 7.92 -2.39 -0.02 2.39 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.49 394.09 1.12 -71.38 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: -1.18 Total: 40.94 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 5.44 Total: -18.38 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -5.11 Total: -122.31 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.06 Total: -18.76 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.49 1.12 -71.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091318517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.320 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds