Wall clock time and date at job start Tue Mar 31 2020 22:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00448 * 2 1 4 4 H 1.48500 * 109.47214 * 240.00020 * 3 2 1 5 5 H 1.48504 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47030 * 119.99820 * 3 2 1 7 7 C 1.38816 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99588 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.53777 * 113.61336 * 155.00204 * 10 9 7 12 12 C 1.53779 * 87.08324 * 89.11456 * 11 10 9 13 13 C 1.53003 * 113.61280 * 139.97605 * 12 11 10 14 14 N 1.46499 * 109.46708 * 176.53052 * 13 12 11 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 12 16 16 O 1.21713 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.46583 * 119.99702 * 179.72878 * 15 14 13 18 18 C 1.38053 * 126.00079 * 179.68796 * 17 15 14 19 19 C 1.39365 * 107.44135 * 179.87363 * 18 17 15 20 20 C 1.37829 * 107.65239 * 0.38873 * 19 18 17 21 21 C 1.47799 * 125.82280 * 179.78068 * 20 19 18 22 22 C 1.39599 * 120.14543 * 179.70335 * 21 20 19 23 23 C 1.37959 * 119.85182 * 179.69864 * 22 21 20 24 24 C 1.38361 * 120.14221 * 0.59317 * 23 22 21 25 25 C 1.38365 * 120.30073 * 359.68077 * 24 23 22 26 26 C 1.37950 * 120.14513 * 0.02562 * 25 24 23 27 27 N 1.36413 * 108.34828 * 359.75904 * 20 19 18 28 28 H 0.96996 * 125.71395 * 179.97438 * 27 20 19 29 29 C 1.53782 * 87.17179 * 25.39139 * 12 11 10 30 30 H 0.97006 * 119.99138 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99935 * 0.02562 * 9 7 2 32 32 H 1.08995 * 112.84907 * 23.80721 * 10 9 7 33 33 H 1.09007 * 113.61722 * 334.56546 * 11 10 9 34 34 H 1.09007 * 113.61442 * 203.66491 * 11 10 9 35 35 H 1.08999 * 113.61796 * 270.79881 * 12 11 10 36 36 H 1.08998 * 109.46692 * 56.53554 * 13 12 11 37 37 H 1.08994 * 109.47584 * 296.53418 * 13 12 11 38 38 H 0.97005 * 120.00261 * 0.02562 * 14 13 12 39 39 H 1.08003 * 126.28000 * 0.02833 * 18 17 15 40 40 H 1.07996 * 126.17610 * 180.14745 * 19 18 17 41 41 H 1.07997 * 120.07198 * 359.97438 * 22 21 20 42 42 H 1.07992 * 119.92665 * 180.31772 * 23 22 21 43 43 H 1.07998 * 119.84916 * 179.69654 * 24 23 22 44 44 H 1.07998 * 119.92919 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.07744 * 180.02562 * 26 25 24 46 46 H 1.09000 * 113.61464 * 89.15380 * 29 12 11 47 47 H 1.08999 * 113.61337 * 220.06200 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.2599 -4.8288 0.5949 12 6 0.7201 -5.0791 -0.8232 13 6 0.6193 -6.5616 -1.1877 14 7 0.0208 -6.6977 -2.5179 15 6 -0.1681 -7.9216 -3.0500 16 8 0.1591 -8.9137 -2.4254 17 6 -0.7724 -8.0579 -4.3784 18 6 -1.0163 -9.2441 -5.0411 19 6 -1.5997 -8.9260 -6.2662 20 6 -1.6961 -7.5530 -6.3391 21 6 -2.2522 -6.7839 -7.4721 22 6 -2.2979 -5.3897 -7.4178 23 6 -2.8126 -4.6775 -8.4814 24 6 -3.2940 -5.3427 -9.5950 25 6 -3.2569 -6.7246 -9.6530 26 6 -2.7394 -7.4486 -8.5989 27 7 -1.1911 -7.0252 -5.1871 28 1 -1.1359 -6.0807 -4.9736 29 6 1.9976 -4.4016 -1.3467 30 1 -0.4849 0.8402 -0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 3.0653 -3.5640 0.4049 33 1 0.4935 -4.5190 1.3054 34 1 1.8867 -5.6368 0.9725 35 1 -0.1913 -4.5251 -1.0476 36 1 -0.0036 -7.0744 -0.4548 37 1 1.6156 -7.0037 -1.1906 38 1 -0.2397 -5.9069 -3.0158 39 1 -0.7976 -10.2368 -4.6760 40 1 -1.9154 -9.6283 -7.0234 41 1 -1.9272 -4.8696 -6.5470 42 1 -2.8438 -3.5988 -8.4428 43 1 -3.7003 -4.7807 -10.4229 44 1 -3.6339 -7.2377 -10.5254 45 1 -2.7106 -8.5272 -8.6455 46 1 2.8264 -5.0925 -1.5009 47 1 1.8259 -3.7473 -2.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091389194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:52 Heat of formation + Delta-G solvation = 57.462506 kcal Electronic energy + Delta-G solvation = -27355.958077 eV Core-core repulsion = 23504.682067 eV Total energy + Delta-G solvation = -3851.276010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60371 -39.62560 -39.00161 -38.33406 -34.79329 -33.29546 -32.39481 -31.85986 -30.94258 -30.27149 -28.80998 -27.06544 -25.12822 -24.09901 -23.50877 -23.08534 -21.97190 -21.52827 -20.65929 -20.03440 -19.18496 -18.28297 -17.38623 -17.08823 -16.13566 -15.93406 -15.59447 -15.20341 -15.02289 -14.78173 -14.54838 -14.27975 -14.08973 -14.01323 -13.75737 -13.59873 -13.30970 -13.00113 -12.92995 -12.87953 -12.71390 -12.32102 -11.98487 -11.68926 -11.46829 -11.39681 -11.10129 -10.88096 -10.56430 -10.36110 -10.24547 -9.92216 -9.83256 -9.74835 -9.55002 -9.35956 -9.32301 -9.12876 -8.93950 -7.94298 -7.06440 -5.86582 -3.15769 0.43867 1.00789 1.51475 2.51173 2.66401 3.06119 3.26555 3.38104 3.42899 3.43599 3.53382 4.23226 4.43897 4.50548 4.55602 4.65695 4.74443 4.94467 4.98183 5.00756 5.04423 5.07781 5.15414 5.19658 5.39354 5.46345 5.54331 5.60536 5.63682 5.72925 5.80097 5.82521 5.88440 6.02991 6.04968 6.05566 6.12496 6.15447 6.27957 6.31023 6.48877 6.52180 6.53964 6.61882 6.66842 6.82753 6.97232 6.99896 7.39106 7.63157 8.05642 8.32657 9.43307 10.00410 10.34628 11.35748 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009241 B = 0.002368 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.242802 B =11822.015778 C =14571.903746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.121 4.121 13 C 0.132 3.868 14 N -0.724 5.724 15 C 0.585 3.415 16 O -0.532 6.532 17 C -0.040 4.040 18 C -0.106 4.106 19 C -0.185 4.185 20 C 0.083 3.917 21 C -0.021 4.021 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.114 4.114 26 C -0.100 4.100 27 N -0.530 5.530 28 H 0.417 0.583 29 C -0.169 4.169 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 -16.243 -17.703 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.009 3.991 14 N -0.374 5.374 15 C 0.372 3.628 16 O -0.409 6.409 17 C -0.154 4.154 18 C -0.132 4.132 19 C -0.209 4.209 20 C -0.034 4.034 21 C -0.022 4.022 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.132 4.132 26 C -0.118 4.118 27 N -0.126 5.126 28 H 0.255 0.745 29 C -0.210 4.210 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.229 0.771 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.087 0.913 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.074 -16.612 -17.087 24.593 hybrid contribution -0.043 1.867 -0.220 1.880 sum -6.117 -14.745 -17.307 23.545 Atomic orbital electron populations 1.69655 1.05148 1.25936 1.57384 1.24768 0.95551 0.97813 1.02717 0.86241 0.78531 0.83320 0.77936 1.21211 1.21655 1.21141 1.19250 0.91107 0.83966 1.43127 0.91025 1.42164 1.05653 0.99438 1.87147 1.21090 0.95167 0.85584 0.92648 1.23439 1.00511 0.99724 0.94988 1.22722 0.99546 0.92821 0.98860 1.21531 0.98203 0.97199 0.82191 1.45976 1.63818 1.07441 1.20200 1.17053 0.78336 0.83686 0.83749 1.90844 1.51610 1.37307 1.61100 1.20541 1.12226 0.88274 0.94324 1.21214 1.00997 0.97000 0.94038 1.21084 1.07770 0.92706 0.99365 1.19130 1.04004 0.92685 0.87574 1.18096 0.99350 0.92302 0.92443 1.21166 1.00494 0.92945 0.99175 1.21097 0.98117 1.00260 0.93410 1.21278 0.99640 0.94640 0.98265 1.21105 0.99430 0.94200 0.98503 1.21114 0.98097 1.00219 0.92411 1.42062 1.47541 1.08761 1.14250 0.74504 1.23926 0.95684 0.99635 1.01762 0.93370 0.78145 0.91877 0.91250 0.90345 0.89003 0.91490 0.91235 0.77143 0.83105 0.83553 0.86373 0.85524 0.85814 0.85540 0.85243 0.91327 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.97 5.31 -52.55 -0.28 -17.25 16 10 C 0.17 3.18 4.57 -67.03 -0.31 2.87 16 11 C -0.15 -2.28 7.39 -25.92 -0.19 -2.48 16 12 C -0.12 -1.73 3.62 -89.81 -0.33 -2.06 16 13 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 14 N -0.72 -8.80 5.55 -61.65 -0.34 -9.15 16 15 C 0.58 8.03 7.78 -12.89 -0.10 7.93 16 16 O -0.53 -9.03 16.87 5.18 0.09 -8.94 16 17 C -0.04 -0.47 7.04 -81.94 -0.58 -1.05 16 18 C -0.11 -1.19 10.60 -39.23 -0.42 -1.61 16 19 C -0.18 -1.77 10.22 -39.31 -0.40 -2.17 16 20 C 0.08 0.81 6.93 -82.07 -0.57 0.24 16 21 C -0.02 -0.19 5.87 -104.97 -0.62 -0.80 16 22 C -0.12 -1.01 9.70 -39.18 -0.38 -1.39 16 23 C -0.11 -0.85 10.03 -39.64 -0.40 -1.24 16 24 C -0.12 -0.82 10.04 -39.49 -0.40 -1.22 16 25 C -0.11 -0.76 10.03 -39.64 -0.40 -1.16 16 26 C -0.10 -0.75 9.57 -39.18 -0.37 -1.12 16 27 N -0.53 -5.14 5.90 -5.81 -0.03 -5.17 16 28 H 0.42 3.21 7.24 -40.82 -0.30 2.91 16 29 C -0.17 -2.71 7.44 -25.83 -0.19 -2.90 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.38 9.78 7.90 -40.82 -0.32 9.45 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.06 8.10 -51.92 -0.42 0.64 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 38 H 0.40 4.06 7.58 -40.82 -0.31 3.75 16 39 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.15 1.03 7.26 -52.49 -0.38 0.65 16 41 H 0.12 0.86 7.14 -52.49 -0.37 0.49 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.74 6.98 -52.49 -0.37 0.38 16 46 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -32.55 396.39 -11.44 -44.00 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -6.64 Total: 13.98 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -5.91 Total: -13.62 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.07 Total: -58.23 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.55 -11.44 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091389194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.460 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds