Wall clock time and date at job start Tue Mar 31 2020 22:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00448 * 2 1 4 4 H 1.48500 * 109.47214 * 240.00020 * 3 2 1 5 5 H 1.48504 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47030 * 119.99820 * 3 2 1 7 7 C 1.38816 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99588 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.53777 * 113.61336 * 155.00204 * 10 9 7 12 12 C 1.53779 * 87.08324 * 89.11456 * 11 10 9 13 13 C 1.53003 * 113.61280 * 139.97605 * 12 11 10 14 14 N 1.46499 * 109.46708 * 176.53052 * 13 12 11 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 12 16 16 O 1.21713 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.46583 * 119.99702 * 179.72878 * 15 14 13 18 18 C 1.38053 * 126.00079 * 179.68796 * 17 15 14 19 19 C 1.39365 * 107.44135 * 179.87363 * 18 17 15 20 20 C 1.37829 * 107.65239 * 0.38873 * 19 18 17 21 21 C 1.47799 * 125.82280 * 179.78068 * 20 19 18 22 22 C 1.39599 * 120.14543 * 179.70335 * 21 20 19 23 23 C 1.37959 * 119.85182 * 179.69864 * 22 21 20 24 24 C 1.38361 * 120.14221 * 0.59317 * 23 22 21 25 25 C 1.38365 * 120.30073 * 359.68077 * 24 23 22 26 26 C 1.37950 * 120.14513 * 0.02562 * 25 24 23 27 27 N 1.36413 * 108.34828 * 359.75904 * 20 19 18 28 28 H 0.96996 * 125.71395 * 179.97438 * 27 20 19 29 29 C 1.53782 * 87.17179 * 25.39139 * 12 11 10 30 30 H 0.97006 * 119.99138 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99935 * 0.02562 * 9 7 2 32 32 H 1.08995 * 112.84907 * 23.80721 * 10 9 7 33 33 H 1.09007 * 113.61722 * 334.56546 * 11 10 9 34 34 H 1.09007 * 113.61442 * 203.66491 * 11 10 9 35 35 H 1.08999 * 113.61796 * 270.79881 * 12 11 10 36 36 H 1.08998 * 109.46692 * 56.53554 * 13 12 11 37 37 H 1.08994 * 109.47584 * 296.53418 * 13 12 11 38 38 H 0.97005 * 120.00261 * 0.02562 * 14 13 12 39 39 H 1.08003 * 126.28000 * 0.02833 * 18 17 15 40 40 H 1.07996 * 126.17610 * 180.14745 * 19 18 17 41 41 H 1.07997 * 120.07198 * 359.97438 * 22 21 20 42 42 H 1.07992 * 119.92665 * 180.31772 * 23 22 21 43 43 H 1.07998 * 119.84916 * 179.69654 * 24 23 22 44 44 H 1.07998 * 119.92919 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.07744 * 180.02562 * 26 25 24 46 46 H 1.09000 * 113.61464 * 89.15380 * 29 12 11 47 47 H 1.08999 * 113.61337 * 220.06200 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.2599 -4.8288 0.5949 12 6 0.7201 -5.0791 -0.8232 13 6 0.6193 -6.5616 -1.1877 14 7 0.0208 -6.6977 -2.5179 15 6 -0.1681 -7.9216 -3.0500 16 8 0.1591 -8.9137 -2.4254 17 6 -0.7724 -8.0579 -4.3784 18 6 -1.0163 -9.2441 -5.0411 19 6 -1.5997 -8.9260 -6.2662 20 6 -1.6961 -7.5530 -6.3391 21 6 -2.2522 -6.7839 -7.4721 22 6 -2.2979 -5.3897 -7.4178 23 6 -2.8126 -4.6775 -8.4814 24 6 -3.2940 -5.3427 -9.5950 25 6 -3.2569 -6.7246 -9.6530 26 6 -2.7394 -7.4486 -8.5989 27 7 -1.1911 -7.0252 -5.1871 28 1 -1.1359 -6.0807 -4.9736 29 6 1.9976 -4.4016 -1.3467 30 1 -0.4849 0.8402 -0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 3.0653 -3.5640 0.4049 33 1 0.4935 -4.5190 1.3054 34 1 1.8867 -5.6368 0.9725 35 1 -0.1913 -4.5251 -1.0476 36 1 -0.0036 -7.0744 -0.4548 37 1 1.6156 -7.0037 -1.1906 38 1 -0.2397 -5.9069 -3.0158 39 1 -0.7976 -10.2368 -4.6760 40 1 -1.9154 -9.6283 -7.0234 41 1 -1.9272 -4.8696 -6.5470 42 1 -2.8438 -3.5988 -8.4428 43 1 -3.7003 -4.7807 -10.4229 44 1 -3.6339 -7.2377 -10.5254 45 1 -2.7106 -8.5272 -8.6455 46 1 2.8264 -5.0925 -1.5009 47 1 1.8259 -3.7473 -2.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091389194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:51 Heat of formation + Delta-G solvation = 38.236190 kcal Electronic energy + Delta-G solvation = -27356.791793 eV Core-core repulsion = 23504.682067 eV Total energy + Delta-G solvation = -3852.109726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40528 -40.68859 -39.87453 -39.40658 -36.10959 -35.03734 -33.05971 -32.58355 -32.08985 -31.53031 -29.82094 -28.18291 -26.46930 -25.77313 -24.55424 -23.68711 -23.16288 -22.41415 -21.46784 -20.86663 -20.22788 -19.55630 -19.24996 -17.84374 -17.16664 -16.78338 -16.62199 -16.60627 -15.90928 -15.83385 -15.77572 -15.30297 -15.28215 -15.01750 -14.70011 -14.60496 -14.49015 -14.28702 -13.81381 -13.64943 -13.57041 -13.44432 -13.31043 -12.95135 -12.94240 -12.65007 -12.23312 -12.21960 -12.10345 -11.92102 -11.66618 -11.51505 -11.25473 -10.95980 -10.81161 -10.50196 -10.20896 -10.09116 -9.90339 -9.02028 -8.68550 -7.97318 -5.25508 -0.24063 0.46319 0.69191 1.46727 1.48909 1.55016 1.78480 1.88157 2.07656 2.29019 2.54171 2.95571 3.35190 3.56881 3.66357 3.72901 3.74707 3.87109 3.93362 4.03818 4.11440 4.24486 4.27320 4.29320 4.35540 4.38413 4.53858 4.58384 4.69462 4.72753 4.85551 4.90738 4.96347 5.02484 5.08089 5.10915 5.11417 5.18944 5.30708 5.37775 5.43500 5.50608 5.51073 5.59593 5.62835 5.75403 5.82596 6.02033 6.24815 6.26347 6.43636 7.02546 7.31523 8.08420 8.30833 9.25678 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009241 B = 0.002368 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.242802 B =11822.015778 C =14571.903746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.103 4.103 13 C 0.140 3.860 14 N -0.717 5.717 15 C 0.586 3.414 16 O -0.570 6.570 17 C -0.064 4.064 18 C -0.113 4.113 19 C -0.189 4.189 20 C 0.089 3.911 21 C -0.042 4.042 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.103 4.103 27 N -0.525 5.525 28 H 0.424 0.576 29 C -0.154 4.154 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.404 0.596 39 H 0.152 0.848 40 H 0.172 0.828 41 H 0.121 0.879 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.152 0.848 45 H 0.147 0.853 46 H 0.091 0.909 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -16.970 -19.462 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.034 3.966 11 C -0.173 4.173 12 C -0.121 4.121 13 C 0.017 3.983 14 N -0.367 5.367 15 C 0.375 3.625 16 O -0.450 6.450 17 C -0.178 4.178 18 C -0.140 4.140 19 C -0.213 4.213 20 C -0.028 4.028 21 C -0.043 4.043 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.121 4.121 27 N -0.121 5.121 28 H 0.263 0.737 29 C -0.194 4.194 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.239 0.761 39 H 0.170 0.830 40 H 0.189 0.811 41 H 0.139 0.861 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.170 0.830 45 H 0.164 0.836 46 H 0.109 0.891 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.897 -17.351 -18.851 26.290 hybrid contribution -0.095 2.055 0.227 2.070 sum -5.992 -15.295 -18.624 24.833 Atomic orbital electron populations 1.69804 1.06527 1.26142 1.59447 1.25539 0.96378 1.01009 1.03731 0.85239 0.77222 0.79288 0.78182 1.20414 1.22239 1.20479 1.19631 0.91511 0.85200 1.41172 0.90614 1.42288 1.05298 1.00523 1.87622 1.21418 0.95117 0.84921 0.95171 1.23344 0.99985 0.98690 0.95269 1.22499 0.98353 0.93469 0.97829 1.21379 0.98469 0.95814 0.82647 1.45880 1.63342 1.07592 1.19919 1.17249 0.77775 0.83333 0.84166 1.90814 1.53506 1.38419 1.62277 1.20309 1.14132 0.89192 0.94172 1.21424 1.00869 0.96987 0.94682 1.21381 1.07497 0.93101 0.99321 1.19449 1.02847 0.93059 0.87488 1.18207 1.00725 0.92518 0.92828 1.21346 1.00905 0.93155 0.99782 1.21339 0.98348 1.01003 0.93620 1.21627 0.98724 0.95144 0.98449 1.21454 0.98775 0.94271 0.99037 1.21409 0.97409 1.01288 0.92042 1.42023 1.47216 1.08858 1.14040 0.73700 1.23746 0.97275 0.99210 0.99183 0.94007 0.79359 0.92159 0.92293 0.87522 0.90055 0.91456 0.90965 0.76062 0.82988 0.81091 0.86098 0.84522 0.83747 0.83020 0.83552 0.89072 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.93 13.06 21.65 0.28 -57.64 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.24 -13.19 9.97 84.03 0.84 -12.35 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 9 N -0.72 -34.92 5.31 -320.17 -1.70 -36.62 16 10 C 0.14 5.36 4.57 45.58 0.21 5.57 16 11 C -0.13 -3.98 7.39 31.12 0.23 -3.75 16 12 C -0.10 -2.85 3.62 -10.27 -0.04 -2.88 16 13 C 0.14 3.49 5.50 86.38 0.47 3.96 16 14 N -0.72 -16.98 5.55 -467.16 -2.59 -19.58 16 15 C 0.59 16.00 7.78 86.42 0.67 16.67 16 16 O -0.57 -19.43 16.87 -4.39 -0.07 -19.50 16 17 C -0.06 -1.51 7.04 40.36 0.28 -1.23 16 18 C -0.11 -2.48 10.60 22.50 0.24 -2.24 16 19 C -0.19 -3.38 10.22 22.44 0.23 -3.15 16 20 C 0.09 1.65 6.93 40.87 0.28 1.93 16 21 C -0.04 -0.69 5.87 -20.09 -0.12 -0.81 16 22 C -0.13 -2.15 9.70 22.53 0.22 -1.93 16 23 C -0.13 -1.75 10.03 22.23 0.22 -1.53 16 24 C -0.12 -1.40 10.04 22.33 0.22 -1.17 16 25 C -0.12 -1.26 10.03 22.23 0.22 -1.03 16 26 C -0.10 -1.33 9.57 22.53 0.22 -1.11 16 27 N -0.52 -9.92 5.90 -172.31 -1.02 -10.94 16 28 H 0.42 6.40 7.24 -92.71 -0.67 5.73 16 29 C -0.15 -4.75 7.44 31.18 0.23 -4.52 16 30 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 31 H 0.37 19.45 7.90 -92.71 -0.73 18.72 16 32 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 33 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 34 H 0.11 2.60 8.10 -2.38 -0.02 2.58 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.81 7.87 -2.39 -0.02 1.79 16 38 H 0.40 8.08 7.58 -92.70 -0.70 7.37 16 39 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 40 H 0.17 2.03 7.26 -2.91 -0.02 2.01 16 41 H 0.12 1.74 7.14 -2.91 -0.02 1.72 16 42 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 44 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 45 H 0.15 1.28 6.98 -2.91 -0.02 1.26 16 46 H 0.09 2.44 7.92 -2.39 -0.02 2.42 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.30 396.39 0.94 -69.36 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -1.09 Total: 40.93 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 5.11 Total: -13.27 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -5.03 Total: -124.78 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.07 Total: -19.50 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.30 0.94 -69.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091389194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.592 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds