Wall clock time and date at job start Tue Mar 31 2020 23:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54034 * 112.12232 * 2 1 4 4 N 1.48326 * 104.53636 * 97.19740 * 3 2 1 5 5 C 1.36935 * 128.19973 * 221.76964 * 4 3 2 6 6 H 1.08001 * 120.00075 * 5.62590 * 5 4 3 7 7 C 1.38815 * 119.99623 * 185.62801 * 5 4 3 8 8 N 1.31614 * 120.00809 * 34.52367 * 7 5 4 9 9 Si 1.86805 * 119.99359 * 214.52366 * 7 5 4 10 10 H 1.48504 * 109.47014 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47144 * 60.00193 * 9 7 5 12 12 H 1.48500 * 109.47186 * 299.99709 * 9 7 5 13 13 C 1.48340 * 103.60198 * 41.51075 * 4 3 2 14 14 C 1.54455 * 104.32430 * 318.45322 * 13 4 3 15 15 H 1.08998 * 112.29538 * 263.01408 * 14 13 4 16 16 C 1.53738 * 109.01539 * 137.92523 * 14 13 4 17 17 N 1.48252 * 105.90195 * 229.74377 * 16 14 13 18 18 C 1.34779 * 126.41508 * 211.08883 * 17 16 14 19 19 O 1.21664 * 119.99750 * 173.87826 * 18 17 16 20 20 C 1.46910 * 119.99744 * 353.88164 * 18 17 16 21 21 C 1.36365 * 126.77123 * 335.60119 * 20 18 17 22 22 N 1.35479 * 109.77132 * 179.89232 * 21 20 18 23 23 H 0.96996 * 124.78881 * 180.15489 * 22 21 20 24 24 C 1.37968 * 110.42262 * 0.38747 * 22 21 20 25 25 C 1.39115 * 133.18996 * 179.80054 * 24 22 21 26 26 C 1.37765 * 119.93529 * 179.97438 * 25 24 22 27 27 C 1.38759 * 120.62796 * 0.02562 * 26 25 24 28 28 C 1.37751 * 120.30633 * 0.02867 * 27 26 25 29 29 C 1.39280 * 119.66595 * 359.93753 * 28 27 26 30 30 C 1.47195 * 106.87780 * 30.83485 * 17 16 14 31 31 H 1.09004 * 109.47135 * 302.41651 * 1 2 3 32 32 H 1.08997 * 109.47548 * 62.42444 * 1 2 3 33 33 H 1.09005 * 109.47271 * 182.42591 * 1 2 3 34 34 H 1.09000 * 110.38767 * 338.40105 * 3 2 1 35 35 H 1.09005 * 110.32519 * 215.96608 * 3 2 1 36 36 H 0.97007 * 119.99511 * 355.39519 * 8 7 5 37 37 H 1.08999 * 110.46048 * 77.16128 * 13 4 3 38 38 H 1.08996 * 110.46513 * 199.74341 * 13 4 3 39 39 H 1.08998 * 110.06695 * 348.69514 * 16 14 13 40 40 H 1.08995 * 110.06376 * 110.21480 * 16 14 13 41 41 H 1.08003 * 125.12069 * 0.02562 * 21 20 18 42 42 H 1.08007 * 120.03328 * 359.94752 * 25 24 22 43 43 H 1.07999 * 119.68565 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.84649 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.16775 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.06424 * 209.64486 * 30 17 16 47 47 H 1.08996 * 110.06490 * 88.12883 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4269 0.0000 4 7 2.4169 1.7041 1.4245 5 6 2.2024 2.8593 2.1277 6 1 1.6748 3.6816 1.6674 7 6 2.6633 2.9735 3.4321 8 7 3.7914 2.3944 3.7847 9 14 1.6822 3.9492 4.6871 10 1 2.3831 3.9181 5.9960 11 1 0.3319 3.3491 4.8349 12 1 1.5515 5.3555 4.2284 13 6 3.0052 0.4313 1.9086 14 6 2.1221 -0.6644 1.2721 15 1 1.3492 -1.0202 1.9534 16 6 3.0230 -1.8030 0.7666 17 7 2.6007 -2.0657 -0.6299 18 6 2.6417 -3.2519 -1.2685 19 8 2.1618 -3.3606 -2.3812 20 6 3.2659 -4.4135 -0.6210 21 6 4.2191 -4.3902 0.3539 22 7 4.5480 -5.6570 0.7037 23 1 5.2030 -5.8923 1.3793 24 6 3.8236 -6.5654 -0.0405 25 6 3.7873 -7.9556 -0.0734 26 6 2.9385 -8.6007 -0.9459 27 6 2.1157 -7.8767 -1.7969 28 6 2.1379 -6.4995 -1.7801 29 6 2.9908 -5.8344 -0.9024 30 6 2.1238 -0.7864 -1.1800 31 1 -0.3633 0.5509 0.8676 32 1 -0.3634 0.4757 -0.9109 33 1 -0.3634 -1.0268 0.0435 34 1 1.3730 2.1365 -0.3761 35 1 3.0191 1.4661 -0.6003 36 1 4.2666 1.8329 3.1523 37 1 4.0364 0.3347 1.5689 38 1 2.9546 0.3774 2.9961 39 1 4.0674 -1.4917 0.7895 40 1 2.8836 -2.6915 1.3823 41 1 4.6460 -3.4963 0.7843 42 1 4.4242 -8.5288 0.5842 43 1 2.9138 -9.6802 -0.9684 44 1 1.4554 -8.3953 -2.4762 45 1 1.4963 -5.9382 -2.4431 46 1 1.3569 -0.9660 -1.9335 47 1 2.9557 -0.2339 -1.6168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091828071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:47 Heat of formation + Delta-G solvation = 63.212696 kcal Electronic energy + Delta-G solvation = -29450.258052 eV Core-core repulsion = 25599.231388 eV Total energy + Delta-G solvation = -3851.026663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64906 -40.11643 -38.14723 -37.13647 -35.11665 -33.02778 -32.12854 -30.99774 -29.99122 -29.70166 -29.18645 -26.58121 -25.67380 -25.21883 -23.24731 -23.07920 -21.93049 -21.63584 -20.53694 -19.11356 -18.66642 -17.84216 -17.37761 -16.82577 -16.25994 -15.83006 -15.47513 -15.01941 -14.79274 -14.53003 -14.25256 -14.07446 -13.89212 -13.88635 -13.61162 -13.36351 -13.02963 -12.71766 -12.69546 -12.33642 -12.01257 -11.89223 -11.87821 -11.67867 -11.33857 -11.18147 -10.91919 -10.74990 -10.43866 -10.33000 -10.16504 -10.14237 -9.98171 -9.89772 -9.79147 -9.56826 -8.55711 -8.50485 -8.36950 -7.95583 -7.10871 -6.27597 -3.09050 0.81728 1.36068 1.92392 2.73263 3.09528 3.35271 3.45909 3.51188 3.68052 3.78377 4.46331 4.48575 4.53172 4.57181 4.76726 4.85985 4.90014 5.02666 5.09979 5.20209 5.32456 5.33849 5.34305 5.45529 5.48817 5.51166 5.55497 5.59882 5.84958 5.87837 5.90209 5.95391 6.06922 6.18987 6.19607 6.20743 6.31534 6.35138 6.43155 6.46106 6.49327 6.58774 6.61296 6.75596 6.85417 6.88415 6.92109 7.13325 7.62230 7.70496 8.36421 8.39739 8.89192 9.75329 10.37507 11.14437 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.002700 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.588899 B =10368.967019 C =11171.889016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C 0.140 3.860 4 N -0.598 5.598 5 C -0.339 4.339 6 H 0.072 0.928 7 C -0.026 4.026 8 N -0.914 5.914 9 Si 1.065 2.935 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.293 1.293 13 C 0.138 3.862 14 C -0.110 4.110 15 H 0.086 0.914 16 C 0.102 3.898 17 N -0.613 5.613 18 C 0.605 3.395 19 O -0.548 6.548 20 C -0.220 4.220 21 C 0.106 3.894 22 N -0.580 5.580 23 H 0.420 0.580 24 C 0.085 3.915 25 C -0.128 4.128 26 C -0.101 4.101 27 C -0.143 4.143 28 C -0.063 4.063 29 C -0.063 4.063 30 C 0.120 3.880 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.268 0.732 37 H 0.024 0.976 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.183 0.817 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -19.574 -6.316 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C 0.013 3.987 4 N -0.322 5.322 5 C -0.465 4.465 6 H 0.090 0.910 7 C -0.227 4.227 8 N -0.555 5.555 9 Si 0.895 3.105 10 H -0.212 1.212 11 H -0.222 1.222 12 H -0.220 1.220 13 C 0.011 3.989 14 C -0.131 4.131 15 H 0.104 0.896 16 C -0.021 4.021 17 N -0.346 5.346 18 C 0.396 3.604 19 O -0.427 6.427 20 C -0.231 4.231 21 C -0.026 4.026 22 N -0.182 5.182 23 H 0.258 0.742 24 C -0.020 4.020 25 C -0.148 4.148 26 C -0.121 4.121 27 C -0.162 4.162 28 C -0.082 4.082 29 C -0.068 4.068 30 C -0.002 4.002 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.200 0.800 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.096 0.904 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.224 -18.991 -5.218 19.696 hybrid contribution 0.477 -0.564 -1.179 1.391 sum 0.701 -19.556 -6.397 20.587 Atomic orbital electron populations 1.21584 0.93205 1.00927 1.02020 1.22268 0.95981 0.97157 0.93301 1.21744 0.96794 0.92199 0.87924 1.45206 1.72410 1.09559 1.05031 1.19699 1.36716 0.93452 0.96664 0.90989 1.25675 0.96530 1.03455 0.97063 1.70869 1.10045 1.32937 1.41624 0.83469 0.75624 0.75114 0.76276 1.21192 1.22167 1.22012 1.21871 0.93099 0.84765 0.99173 1.23095 0.98114 0.94948 0.96901 0.89552 1.22631 0.98777 0.98779 0.81872 1.48696 1.63664 1.08057 1.14198 1.16832 0.78646 0.80447 0.84507 1.90756 1.48236 1.83915 1.19813 1.19974 1.06022 0.92338 1.04723 1.22417 0.96864 0.87618 0.95683 1.41565 1.36873 1.04707 1.35029 0.74218 1.18263 0.96521 0.91364 0.95859 1.20005 1.02598 0.89856 1.02385 1.20811 0.95950 0.99580 0.95715 1.20965 1.00936 0.93578 1.00735 1.20671 0.96944 0.93818 0.96749 1.18747 0.98795 0.90884 0.98325 1.22134 0.98890 0.82859 0.96351 0.91625 0.92894 0.93365 0.92872 0.95712 0.92096 0.95824 0.90900 0.91009 0.90646 0.79997 0.86124 0.85658 0.85786 0.85171 0.90447 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 8.59 37.16 0.32 -1.55 16 2 C -0.08 -1.40 1.07 -152.39 -0.16 -1.56 16 3 C 0.14 2.76 6.36 -2.50 -0.02 2.74 16 4 N -0.60 -14.28 3.35 -168.73 -0.56 -14.84 16 5 C -0.34 -9.19 10.17 -15.06 -0.15 -9.34 16 6 H 0.07 1.96 8.02 -52.49 -0.42 1.54 16 7 C -0.03 -0.71 5.02 -17.43 -0.09 -0.80 16 8 N -0.91 -26.45 12.75 55.49 0.71 -25.74 16 9 Si 1.07 24.68 30.03 -169.99 -5.11 19.57 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.14 2.89 4.75 -2.27 -0.01 2.88 16 14 C -0.11 -1.84 3.71 -88.28 -0.33 -2.17 16 15 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 16 C 0.10 1.40 4.90 -2.69 -0.01 1.39 16 17 N -0.61 -9.28 3.34 -172.25 -0.58 -9.86 16 18 C 0.61 9.85 7.81 -12.75 -0.10 9.75 16 19 O -0.55 -10.55 16.91 5.22 0.09 -10.46 16 20 C -0.22 -3.05 5.94 -103.31 -0.61 -3.66 16 21 C 0.11 1.10 9.96 -16.62 -0.17 0.94 16 22 N -0.58 -5.07 5.99 -10.48 -0.06 -5.13 16 23 H 0.42 2.17 8.96 -40.82 -0.37 1.80 16 24 C 0.09 0.93 7.26 -83.97 -0.61 0.32 16 25 C -0.13 -1.16 10.07 -39.43 -0.40 -1.56 16 26 C -0.10 -0.89 10.01 -39.56 -0.40 -1.29 16 27 C -0.14 -1.44 10.03 -39.57 -0.40 -1.84 16 28 C -0.06 -0.81 9.99 -39.37 -0.39 -1.20 16 29 C -0.06 -0.85 6.29 -104.95 -0.66 -1.51 16 30 C 0.12 1.87 6.27 -3.28 -0.02 1.85 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 1.04 7.90 -51.93 -0.41 0.63 16 35 H 0.03 0.49 7.16 -51.93 -0.37 0.12 16 36 H 0.27 7.65 6.27 -40.82 -0.26 7.39 16 37 H 0.02 0.50 7.10 -51.93 -0.37 0.13 16 38 H 0.07 1.72 6.62 -51.93 -0.34 1.37 16 39 H 0.07 0.92 6.68 -51.93 -0.35 0.58 16 40 H 0.08 0.90 6.50 -51.93 -0.34 0.56 16 41 H 0.18 1.49 6.03 -52.48 -0.32 1.18 16 42 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.76 7.82 -52.49 -0.41 1.35 16 46 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 47 H 0.07 1.06 7.10 -51.93 -0.37 0.69 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -33.82 372.15 -10.56 -44.39 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.45 Total: 3.08 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.20 Total: -6.62 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.50 Total: -55.57 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.11 Total: 19.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.82 -10.56 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091828071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.600 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds