Wall clock time and date at job start Tue Mar 31 2020 23:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54034 * 112.12232 * 2 1 4 4 N 1.48326 * 104.53636 * 97.19740 * 3 2 1 5 5 C 1.36935 * 128.19973 * 221.76964 * 4 3 2 6 6 H 1.08001 * 120.00075 * 5.62590 * 5 4 3 7 7 C 1.38815 * 119.99623 * 185.62801 * 5 4 3 8 8 N 1.31614 * 120.00809 * 34.52367 * 7 5 4 9 9 Si 1.86805 * 119.99359 * 214.52366 * 7 5 4 10 10 H 1.48504 * 109.47014 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47144 * 60.00193 * 9 7 5 12 12 H 1.48500 * 109.47186 * 299.99709 * 9 7 5 13 13 C 1.48340 * 103.60198 * 41.51075 * 4 3 2 14 14 C 1.54455 * 104.32430 * 318.45322 * 13 4 3 15 15 H 1.08998 * 112.29538 * 263.01408 * 14 13 4 16 16 C 1.53738 * 109.01539 * 137.92523 * 14 13 4 17 17 N 1.48252 * 105.90195 * 229.74377 * 16 14 13 18 18 C 1.34779 * 126.41508 * 211.08883 * 17 16 14 19 19 O 1.21664 * 119.99750 * 173.87826 * 18 17 16 20 20 C 1.46910 * 119.99744 * 353.88164 * 18 17 16 21 21 C 1.36365 * 126.77123 * 335.60119 * 20 18 17 22 22 N 1.35479 * 109.77132 * 179.89232 * 21 20 18 23 23 H 0.96996 * 124.78881 * 180.15489 * 22 21 20 24 24 C 1.37968 * 110.42262 * 0.38747 * 22 21 20 25 25 C 1.39115 * 133.18996 * 179.80054 * 24 22 21 26 26 C 1.37765 * 119.93529 * 179.97438 * 25 24 22 27 27 C 1.38759 * 120.62796 * 0.02562 * 26 25 24 28 28 C 1.37751 * 120.30633 * 0.02867 * 27 26 25 29 29 C 1.39280 * 119.66595 * 359.93753 * 28 27 26 30 30 C 1.47195 * 106.87780 * 30.83485 * 17 16 14 31 31 H 1.09004 * 109.47135 * 302.41651 * 1 2 3 32 32 H 1.08997 * 109.47548 * 62.42444 * 1 2 3 33 33 H 1.09005 * 109.47271 * 182.42591 * 1 2 3 34 34 H 1.09000 * 110.38767 * 338.40105 * 3 2 1 35 35 H 1.09005 * 110.32519 * 215.96608 * 3 2 1 36 36 H 0.97007 * 119.99511 * 355.39519 * 8 7 5 37 37 H 1.08999 * 110.46048 * 77.16128 * 13 4 3 38 38 H 1.08996 * 110.46513 * 199.74341 * 13 4 3 39 39 H 1.08998 * 110.06695 * 348.69514 * 16 14 13 40 40 H 1.08995 * 110.06376 * 110.21480 * 16 14 13 41 41 H 1.08003 * 125.12069 * 0.02562 * 21 20 18 42 42 H 1.08007 * 120.03328 * 359.94752 * 25 24 22 43 43 H 1.07999 * 119.68565 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.84649 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.16775 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.06424 * 209.64486 * 30 17 16 47 47 H 1.08996 * 110.06490 * 88.12883 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4269 0.0000 4 7 2.4169 1.7041 1.4245 5 6 2.2024 2.8593 2.1277 6 1 1.6748 3.6816 1.6674 7 6 2.6633 2.9735 3.4321 8 7 3.7914 2.3944 3.7847 9 14 1.6822 3.9492 4.6871 10 1 2.3831 3.9181 5.9960 11 1 0.3319 3.3491 4.8349 12 1 1.5515 5.3555 4.2284 13 6 3.0052 0.4313 1.9086 14 6 2.1221 -0.6644 1.2721 15 1 1.3492 -1.0202 1.9534 16 6 3.0230 -1.8030 0.7666 17 7 2.6007 -2.0657 -0.6299 18 6 2.6417 -3.2519 -1.2685 19 8 2.1618 -3.3606 -2.3812 20 6 3.2659 -4.4135 -0.6210 21 6 4.2191 -4.3902 0.3539 22 7 4.5480 -5.6570 0.7037 23 1 5.2030 -5.8923 1.3793 24 6 3.8236 -6.5654 -0.0405 25 6 3.7873 -7.9556 -0.0734 26 6 2.9385 -8.6007 -0.9459 27 6 2.1157 -7.8767 -1.7969 28 6 2.1379 -6.4995 -1.7801 29 6 2.9908 -5.8344 -0.9024 30 6 2.1238 -0.7864 -1.1800 31 1 -0.3633 0.5509 0.8676 32 1 -0.3634 0.4757 -0.9109 33 1 -0.3634 -1.0268 0.0435 34 1 1.3730 2.1365 -0.3761 35 1 3.0191 1.4661 -0.6003 36 1 4.2666 1.8329 3.1523 37 1 4.0364 0.3347 1.5689 38 1 2.9546 0.3774 2.9961 39 1 4.0674 -1.4917 0.7895 40 1 2.8836 -2.6915 1.3823 41 1 4.6460 -3.4963 0.7843 42 1 4.4242 -8.5288 0.5842 43 1 2.9138 -9.6802 -0.9684 44 1 1.4554 -8.3953 -2.4762 45 1 1.4963 -5.9382 -2.4431 46 1 1.3569 -0.9660 -1.9335 47 1 2.9557 -0.2339 -1.6168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091828071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:46 Heat of formation + Delta-G solvation = 42.882946 kcal Electronic energy + Delta-G solvation = -29451.139616 eV Core-core repulsion = 25599.231388 eV Total energy + Delta-G solvation = -3851.908227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50024 -41.42697 -39.49163 -37.90615 -36.70761 -34.61935 -33.09474 -32.49191 -31.54632 -30.50807 -30.10793 -27.93237 -27.28144 -26.74107 -24.60285 -23.92091 -22.83771 -22.72587 -22.17081 -20.34015 -19.89467 -19.36820 -18.70391 -17.85410 -17.23457 -16.81792 -16.54005 -16.29944 -16.01701 -15.80442 -15.66316 -15.52553 -15.29922 -14.96039 -14.78864 -14.65833 -14.23685 -14.19236 -13.78438 -13.59764 -13.32570 -13.10083 -12.90076 -12.68686 -12.60947 -12.52741 -12.37971 -12.26846 -11.97476 -11.90429 -11.71900 -11.63947 -11.57572 -11.51565 -10.99292 -10.73564 -10.38993 -9.77138 -9.29775 -9.05877 -8.78172 -8.42247 -5.17828 -0.00058 0.56452 1.00319 1.59315 1.66812 1.83970 1.85708 2.08493 2.29448 2.62694 2.94515 3.18507 3.28562 3.35948 3.67573 3.70687 3.84188 3.86392 3.90118 4.08238 4.14899 4.19691 4.23774 4.33926 4.36438 4.40255 4.55755 4.61606 4.63386 4.71257 4.71863 4.75888 4.81872 4.86554 4.95427 5.01502 5.07043 5.12539 5.21569 5.25210 5.34020 5.38637 5.43317 5.52111 5.61842 5.66646 5.69052 6.11691 6.32652 6.50092 6.52580 6.85894 7.16132 7.72336 8.39908 9.02290 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.002700 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.588899 B =10368.967019 C =11171.889016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C 0.139 3.861 4 N -0.624 5.624 5 C -0.344 4.344 6 H 0.063 0.937 7 C -0.076 4.076 8 N -0.941 5.941 9 Si 1.113 2.887 10 H -0.292 1.292 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.144 3.856 14 C -0.101 4.101 15 H 0.087 0.913 16 C 0.111 3.889 17 N -0.612 5.612 18 C 0.604 3.396 19 O -0.590 6.590 20 C -0.266 4.266 21 C 0.135 3.865 22 N -0.561 5.561 23 H 0.440 0.560 24 C 0.075 3.925 25 C -0.120 4.120 26 C -0.103 4.103 27 C -0.138 4.138 28 C -0.100 4.100 29 C -0.093 4.093 30 C 0.125 3.875 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.258 0.742 37 H 0.025 0.975 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.207 0.793 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.142 0.858 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -21.990 -5.443 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.077 4.077 3 C 0.013 3.987 4 N -0.349 5.349 5 C -0.472 4.472 6 H 0.081 0.919 7 C -0.272 4.272 8 N -0.584 5.584 9 Si 0.939 3.061 10 H -0.218 1.218 11 H -0.210 1.210 12 H -0.204 1.204 13 C 0.018 3.982 14 C -0.122 4.122 15 H 0.105 0.895 16 C -0.012 4.012 17 N -0.344 5.344 18 C 0.397 3.603 19 O -0.472 6.472 20 C -0.277 4.277 21 C 0.000 4.000 22 N -0.163 5.163 23 H 0.282 0.718 24 C -0.031 4.031 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.157 4.157 28 C -0.119 4.119 29 C -0.098 4.098 30 C 0.002 3.998 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.224 0.776 42 H 0.172 0.828 43 H 0.177 0.823 44 H 0.160 0.840 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.791 -21.442 -4.349 21.893 hybrid contribution 0.334 0.123 -1.514 1.555 sum 1.124 -21.319 -5.863 22.139 Atomic orbital electron populations 1.21527 0.92288 1.01381 1.01957 1.22132 0.96596 0.95237 0.93752 1.21867 0.96924 0.93964 0.85909 1.45432 1.72954 1.09660 1.06878 1.19889 1.35610 0.94412 0.97242 0.91936 1.26888 0.96730 1.04679 0.98880 1.70967 1.11305 1.34540 1.41584 0.82827 0.74528 0.74871 0.73902 1.21803 1.20998 1.20434 1.21821 0.93795 0.85006 0.97553 1.22951 0.97875 0.94704 0.96628 0.89500 1.22623 0.98647 0.98570 0.81322 1.48662 1.63520 1.07639 1.14545 1.17226 0.78046 0.80996 0.84070 1.90721 1.50303 1.84524 1.21691 1.19875 1.08703 0.91727 1.07347 1.22652 0.94803 0.88881 0.93674 1.41544 1.36381 1.03793 1.34613 0.71824 1.18466 0.96515 0.92235 0.95854 1.20460 1.02223 0.89178 1.02128 1.21239 0.94984 1.01245 0.94755 1.21261 1.00960 0.92577 1.00859 1.20676 0.98209 0.95130 0.97875 1.19036 0.99948 0.91296 0.99479 1.22012 0.98898 0.83182 0.95708 0.93282 0.91518 0.92446 0.93169 0.95424 0.93113 0.95736 0.93907 0.89553 0.88149 0.77624 0.82757 0.82283 0.83973 0.87619 0.90704 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.48 8.59 71.98 0.62 -2.86 16 2 C -0.07 -2.44 1.07 -50.81 -0.05 -2.49 16 3 C 0.14 5.48 6.36 86.38 0.55 6.03 16 4 N -0.62 -30.18 3.35 -687.74 -2.30 -32.48 16 5 C -0.34 -18.92 10.17 84.03 0.85 -18.07 16 6 H 0.06 3.47 8.02 -2.91 -0.02 3.44 16 7 C -0.08 -4.20 5.02 84.86 0.43 -3.78 16 8 N -0.94 -55.37 12.75 21.65 0.28 -55.09 16 9 Si 1.11 50.11 30.03 68.60 2.06 52.17 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 C 0.14 6.09 4.75 86.52 0.41 6.50 16 14 C -0.10 -3.30 3.71 -9.28 -0.03 -3.33 16 15 H 0.09 2.86 7.93 -2.39 -0.02 2.84 16 16 C 0.11 2.83 4.90 86.29 0.42 3.26 16 17 N -0.61 -18.00 3.34 -817.12 -2.73 -20.73 16 18 C 0.60 19.74 7.81 86.51 0.68 20.41 16 19 O -0.59 -23.60 16.91 -4.23 -0.07 -23.67 16 20 C -0.27 -7.19 5.94 -19.02 -0.11 -7.31 16 21 C 0.13 2.46 9.96 83.69 0.83 3.29 16 22 N -0.56 -8.00 5.99 -187.08 -1.12 -9.12 16 23 H 0.44 2.73 8.96 -92.71 -0.83 1.90 16 24 C 0.07 1.45 7.26 38.91 0.28 1.73 16 25 C -0.12 -1.74 10.07 22.37 0.23 -1.52 16 26 C -0.10 -1.49 10.01 22.28 0.22 -1.27 16 27 C -0.14 -2.61 10.03 22.28 0.22 -2.39 16 28 C -0.10 -2.64 9.99 22.41 0.22 -2.41 16 29 C -0.09 -2.49 6.29 -20.08 -0.13 -2.62 16 30 C 0.12 3.83 6.27 86.50 0.54 4.37 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.05 1.97 7.90 -2.39 -0.02 1.95 16 35 H 0.03 1.08 7.16 -2.38 -0.02 1.07 16 36 H 0.26 15.12 6.27 -92.70 -0.58 14.54 16 37 H 0.02 1.03 7.10 -2.39 -0.02 1.02 16 38 H 0.04 2.05 6.62 -2.39 -0.02 2.04 16 39 H 0.09 2.01 6.68 -2.39 -0.02 2.00 16 40 H 0.10 2.11 6.50 -2.39 -0.02 2.10 16 41 H 0.21 2.65 6.03 -2.91 -0.02 2.63 16 42 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.11 3.15 7.82 -2.91 -0.02 3.13 16 46 H 0.07 2.35 7.58 -2.38 -0.02 2.33 16 47 H 0.07 2.14 7.10 -2.39 -0.02 2.12 16 Total: -1.00 -76.63 372.15 2.66 -73.97 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.36 Total: 17.42 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 6.18 Total: -2.46 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -5.88 Total: -117.43 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.07 Total: -23.67 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.06 Total: 52.17 kcal Total: -76.63 2.66 -73.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091828071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.857 kcal (2) G-P(sol) polarization free energy of solvation -76.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds