Wall clock time and date at job start Tue Mar 31 2020 22:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47208 * 240.00044 * 3 2 1 5 5 H 1.48503 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47199 * 119.99928 * 3 2 1 7 7 C 1.38812 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00489 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99732 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00026 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.17493 * 50.22198 * 10 9 7 12 12 C 1.53028 * 109.32242 * 290.67253 * 10 9 7 13 13 C 1.53971 * 108.82822 * 295.13678 * 12 10 9 14 14 H 1.09003 * 112.99513 * 168.09697 * 13 12 10 15 15 C 1.55427 * 107.20232 * 293.49028 * 13 12 10 16 16 C 1.55443 * 100.23530 * 73.48013 * 15 13 12 17 17 H 1.09002 * 113.04412 * 163.21124 * 16 15 13 18 18 C 1.52977 * 109.32754 * 169.77958 * 10 9 7 19 19 N 1.47782 * 104.11924 * 40.86347 * 16 15 13 20 20 C 1.34784 * 125.85368 * 153.44076 * 19 16 15 21 21 O 1.21593 * 119.99975 * 359.72408 * 20 19 16 22 22 C 1.47503 * 119.99584 * 179.71854 * 20 19 16 23 23 C 1.41194 * 126.36908 * 180.02562 * 22 20 19 24 24 C 1.37992 * 106.86757 * 180.02562 * 23 22 20 25 25 C 1.41382 * 131.99142 * 180.27549 * 24 23 22 26 26 C 1.35736 * 119.33405 * 180.16124 * 25 24 23 27 27 C 1.40825 * 119.72304 * 359.51438 * 26 25 24 28 28 C 1.34543 * 120.57862 * 0.27652 * 27 26 25 29 29 N 1.37437 * 120.74261 * 359.97359 * 28 27 26 30 30 C 1.35122 * 131.28085 * 180.02562 * 29 28 27 31 31 C 1.47075 * 108.28867 * 333.18310 * 19 16 15 32 32 H 0.97000 * 120.00472 * 0.02562 * 1 2 3 33 33 H 0.96998 * 120.00334 * 0.02562 * 9 7 2 34 34 H 1.09001 * 109.57868 * 175.33863 * 12 10 9 35 35 H 1.08997 * 109.68877 * 55.00884 * 12 10 9 36 36 H 1.09000 * 111.23428 * 191.43868 * 15 13 12 37 37 H 1.09001 * 111.23476 * 315.87713 * 15 13 12 38 38 H 1.08996 * 109.53617 * 185.06677 * 18 10 9 39 39 H 1.09007 * 109.53489 * 305.21549 * 18 10 9 40 40 H 1.08002 * 126.56553 * 0.02562 * 23 22 20 41 41 H 1.08002 * 120.33346 * 359.93383 * 25 24 23 42 42 H 1.08006 * 120.14383 * 179.78853 * 26 25 24 43 43 H 1.08002 * 119.71313 * 180.24568 * 27 26 25 44 44 H 1.07994 * 119.62673 * 179.97438 * 28 27 26 45 45 H 1.08004 * 125.61739 * 359.96032 * 30 29 28 46 46 H 1.08998 * 109.97718 * 120.71691 * 31 19 16 47 47 H 1.08997 * 109.97774 * 241.95959 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6569 0.0027 11 1 2.8076 -3.6368 0.7940 12 6 2.7528 -3.8417 -1.3482 13 6 1.6799 -3.9774 -2.4442 14 1 2.0891 -3.9055 -3.4519 15 6 0.9234 -5.3101 -2.1844 16 6 0.0811 -4.9115 -0.9403 17 1 -0.7458 -5.5952 -0.7480 18 6 1.0809 -4.8054 0.2599 19 7 -0.3790 -3.5397 -1.2408 20 6 -1.4947 -2.9577 -0.7580 21 8 -2.2261 -3.5743 -0.0075 22 6 -1.8284 -1.5726 -1.1401 23 6 -2.9558 -0.8356 -0.7164 24 6 -2.8703 0.4055 -1.3134 25 6 -3.7055 1.5445 -1.2513 26 6 -3.3722 2.6530 -1.9602 27 6 -2.1978 2.6578 -2.7374 28 6 -1.4060 1.5712 -2.7878 29 7 -1.7256 0.4357 -2.0827 30 6 -1.0969 -0.7559 -1.9790 31 6 0.5926 -2.9162 -2.1520 32 1 -0.4851 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0016 34 1 3.3656 -4.7427 -1.3235 35 1 3.3825 -2.9773 -1.5586 36 1 0.2868 -5.5737 -3.0290 37 1 1.6162 -6.1176 -1.9479 38 1 1.6334 -5.7405 0.3510 39 1 0.5304 -4.6162 1.1815 40 1 -3.7356 -1.1778 -0.0522 41 1 -4.6017 1.5315 -0.6487 42 1 -4.0026 3.5293 -1.9250 43 1 -1.9307 3.5413 -3.2983 44 1 -0.5092 1.5916 -3.3891 45 1 -0.1742 -1.0251 -2.4716 46 1 0.0993 -2.6236 -3.0789 47 1 1.0412 -2.0435 -1.6776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095008844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:57 Heat of formation + Delta-G solvation = 135.429792 kcal Electronic energy + Delta-G solvation = -32261.880572 eV Core-core repulsion = 28413.985477 eV Total energy + Delta-G solvation = -3847.895095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41875 -40.59942 -37.46198 -35.60975 -34.24092 -32.78484 -32.21198 -31.14410 -30.61383 -29.02155 -27.73618 -26.84934 -25.25031 -23.76356 -23.58807 -22.05451 -21.26516 -20.98745 -20.25704 -18.97987 -18.22484 -17.39474 -16.67039 -16.44323 -15.51933 -15.14052 -15.05428 -14.66568 -14.56800 -14.09258 -13.83748 -13.63033 -13.49146 -13.11450 -13.01382 -12.93537 -12.44748 -12.25190 -12.03720 -11.79227 -11.56873 -11.55009 -11.40529 -11.17050 -11.10896 -10.99584 -10.95118 -10.72215 -10.54777 -10.29549 -10.22519 -9.88452 -9.76401 -9.61761 -9.53339 -9.03279 -8.72505 -7.79922 -7.47765 -6.88167 -6.37028 -5.65041 -3.17361 1.48109 2.25462 3.07697 3.28978 3.37102 3.40079 3.55323 3.86246 4.28199 4.44336 4.61611 4.91579 5.04888 5.12525 5.17529 5.37729 5.40287 5.50799 5.53245 5.63526 5.69137 5.74313 5.76918 5.79230 5.83434 6.00640 6.03999 6.08311 6.16835 6.20329 6.31852 6.33574 6.40456 6.48293 6.52988 6.58344 6.71136 6.76346 6.77943 6.82915 6.84291 7.01589 7.05727 7.22983 7.38418 7.53136 7.76044 7.81944 8.23081 8.24789 8.41289 9.16451 9.36474 9.93488 10.33786 11.23963 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.006047 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.219404 B = 4629.041716 C = 5849.042166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.021 4.021 3 Si 0.894 3.106 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.170 3.830 11 H 0.037 0.963 12 C -0.127 4.127 13 C -0.094 4.094 14 H 0.084 0.916 15 C -0.128 4.128 16 C 0.135 3.865 17 H 0.091 0.909 18 C -0.134 4.134 19 N -0.599 5.599 20 C 0.609 3.391 21 O -0.570 6.570 22 C -0.164 4.164 23 C -0.113 4.113 24 C -0.008 4.008 25 C -0.063 4.063 26 C -0.165 4.165 27 C -0.160 4.160 28 C 0.058 3.942 29 N -0.346 5.346 30 C 0.117 3.883 31 C 0.059 3.941 32 H 0.262 0.738 33 H 0.398 0.602 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.145 0.855 45 H 0.171 0.829 46 H 0.031 0.969 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -2.653 -8.185 8.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.217 4.217 3 Si 0.725 3.275 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.361 4.361 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.061 3.939 11 H 0.055 0.945 12 C -0.167 4.167 13 C -0.113 4.113 14 H 0.102 0.898 15 C -0.166 4.166 16 C 0.031 3.969 17 H 0.109 0.891 18 C -0.172 4.172 19 N -0.333 5.333 20 C 0.403 3.597 21 O -0.451 6.451 22 C -0.170 4.170 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.082 4.082 26 C -0.185 4.185 27 C -0.182 4.182 28 C -0.061 4.061 29 N -0.012 5.012 30 C -0.021 4.021 31 C -0.063 4.063 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.163 0.837 45 H 0.188 0.812 46 H 0.049 0.951 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.327 -2.634 -7.811 8.250 hybrid contribution 0.584 1.181 0.285 1.348 sum 0.257 -1.453 -7.526 7.669 Atomic orbital electron populations 1.69803 1.03871 1.25834 1.53487 1.24776 0.95703 0.97099 1.04161 0.86459 0.78736 0.84387 0.77931 1.21406 1.21649 1.21413 1.19353 0.91385 0.84424 1.40954 0.91164 1.43845 1.07645 0.99642 1.86351 1.20216 0.92907 0.86602 0.94201 0.94544 1.22254 0.96999 1.00497 0.96969 1.22478 0.96046 0.94230 0.98531 0.89781 1.23040 0.98610 0.97612 0.97313 1.22680 0.95155 0.84562 0.94484 0.89104 1.22713 0.97607 0.98550 0.98372 1.48421 1.22991 1.13961 1.47896 1.17177 0.78404 0.85092 0.78977 1.90667 1.50933 1.65509 1.37977 1.18662 0.99277 0.94059 1.05047 1.20672 0.99375 0.91489 1.02293 1.18293 0.91703 0.96822 1.04061 1.20458 0.98177 0.91323 0.98210 1.20555 0.98354 0.98515 1.01043 1.20362 0.96706 0.97542 1.03561 1.21391 1.00264 0.86336 0.98147 1.41000 1.18751 1.09580 1.31906 1.22273 0.96530 0.82678 1.00607 1.23657 0.89071 1.01931 0.91616 0.92705 0.75772 0.93218 0.91469 0.91574 0.90489 0.91587 0.91697 0.84877 0.85552 0.86518 0.85367 0.83703 0.81195 0.95102 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.46 7.45 55.49 0.41 -22.05 16 2 C -0.02 -0.53 5.39 -17.43 -0.09 -0.62 16 3 Si 0.89 20.41 29.55 -169.99 -5.02 15.38 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.23 -5.56 8.00 -15.06 -0.12 -5.68 16 8 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 9 N -0.72 -16.22 2.78 -53.42 -0.15 -16.37 16 10 C 0.17 3.18 3.12 -67.92 -0.21 2.97 16 11 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.13 -2.00 5.21 -26.21 -0.14 -2.13 16 13 C -0.09 -1.39 4.27 -87.93 -0.38 -1.77 16 14 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.13 -1.73 6.22 -24.15 -0.15 -1.88 16 16 C 0.13 2.29 4.12 -64.01 -0.26 2.03 16 17 H 0.09 1.56 8.01 -51.93 -0.42 1.14 16 18 C -0.13 -2.29 5.50 -24.82 -0.14 -2.43 16 19 N -0.60 -11.76 1.74 -161.26 -0.28 -12.04 16 20 C 0.61 13.95 6.20 -12.48 -0.08 13.88 16 21 O -0.57 -14.46 17.17 5.28 0.09 -14.37 16 22 C -0.16 -3.63 4.47 -105.07 -0.47 -4.10 16 23 C -0.11 -2.44 10.71 -38.55 -0.41 -2.85 16 24 C -0.01 -0.17 6.23 -84.01 -0.52 -0.69 16 25 C -0.06 -1.06 10.11 -39.28 -0.40 -1.45 16 26 C -0.16 -2.51 10.07 -39.50 -0.40 -2.91 16 27 C -0.16 -2.43 9.97 -39.91 -0.40 -2.82 16 28 C 0.06 0.97 10.89 -16.35 -0.18 0.79 16 29 N -0.35 -6.74 2.06 -60.42 -0.12 -6.87 16 30 C 0.12 2.41 6.91 -16.17 -0.11 2.29 16 31 C 0.06 1.07 3.49 -2.83 -0.01 1.06 16 32 H 0.26 6.91 7.20 -40.82 -0.29 6.62 16 33 H 0.40 9.48 2.99 -40.82 -0.12 9.36 16 34 H 0.05 0.67 8.01 -51.93 -0.42 0.25 16 35 H 0.07 1.13 7.72 -51.93 -0.40 0.73 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.89 7.83 -51.93 -0.41 0.49 16 38 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.13 2.78 8.06 -52.49 -0.42 2.35 16 41 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 43 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 45 H 0.17 3.39 4.36 -52.48 -0.23 3.17 16 46 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 47 H 0.17 3.52 2.70 -61.41 -0.17 3.36 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -28.93 347.30 -10.54 -39.47 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -6.23 Total: 17.93 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -4.46 Total: -6.32 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.14 Total: -57.33 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.09 Total: -14.37 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.93 -10.54 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095008844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.901 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds