Wall clock time and date at job start Tue Mar 31 2020 22:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47208 * 240.00044 * 3 2 1 5 5 H 1.48503 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47199 * 119.99928 * 3 2 1 7 7 C 1.38812 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00489 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99732 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00026 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.17493 * 50.22198 * 10 9 7 12 12 C 1.53028 * 109.32242 * 290.67253 * 10 9 7 13 13 C 1.53971 * 108.82822 * 295.13678 * 12 10 9 14 14 H 1.09003 * 112.99513 * 168.09697 * 13 12 10 15 15 C 1.55427 * 107.20232 * 293.49028 * 13 12 10 16 16 C 1.55443 * 100.23530 * 73.48013 * 15 13 12 17 17 H 1.09002 * 113.04412 * 163.21124 * 16 15 13 18 18 C 1.52977 * 109.32754 * 169.77958 * 10 9 7 19 19 N 1.47782 * 104.11924 * 40.86347 * 16 15 13 20 20 C 1.34784 * 125.85368 * 153.44076 * 19 16 15 21 21 O 1.21593 * 119.99975 * 359.72408 * 20 19 16 22 22 C 1.47503 * 119.99584 * 179.71854 * 20 19 16 23 23 C 1.41194 * 126.36908 * 180.02562 * 22 20 19 24 24 C 1.37992 * 106.86757 * 180.02562 * 23 22 20 25 25 C 1.41382 * 131.99142 * 180.27549 * 24 23 22 26 26 C 1.35736 * 119.33405 * 180.16124 * 25 24 23 27 27 C 1.40825 * 119.72304 * 359.51438 * 26 25 24 28 28 C 1.34543 * 120.57862 * 0.27652 * 27 26 25 29 29 N 1.37437 * 120.74261 * 359.97359 * 28 27 26 30 30 C 1.35122 * 131.28085 * 180.02562 * 29 28 27 31 31 C 1.47075 * 108.28867 * 333.18310 * 19 16 15 32 32 H 0.97000 * 120.00472 * 0.02562 * 1 2 3 33 33 H 0.96998 * 120.00334 * 0.02562 * 9 7 2 34 34 H 1.09001 * 109.57868 * 175.33863 * 12 10 9 35 35 H 1.08997 * 109.68877 * 55.00884 * 12 10 9 36 36 H 1.09000 * 111.23428 * 191.43868 * 15 13 12 37 37 H 1.09001 * 111.23476 * 315.87713 * 15 13 12 38 38 H 1.08996 * 109.53617 * 185.06677 * 18 10 9 39 39 H 1.09007 * 109.53489 * 305.21549 * 18 10 9 40 40 H 1.08002 * 126.56553 * 0.02562 * 23 22 20 41 41 H 1.08002 * 120.33346 * 359.93383 * 25 24 23 42 42 H 1.08006 * 120.14383 * 179.78853 * 26 25 24 43 43 H 1.08002 * 119.71313 * 180.24568 * 27 26 25 44 44 H 1.07994 * 119.62673 * 179.97438 * 28 27 26 45 45 H 1.08004 * 125.61739 * 359.96032 * 30 29 28 46 46 H 1.08998 * 109.97718 * 120.71691 * 31 19 16 47 47 H 1.08997 * 109.97774 * 241.95959 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6569 0.0027 11 1 2.8076 -3.6368 0.7940 12 6 2.7528 -3.8417 -1.3482 13 6 1.6799 -3.9774 -2.4442 14 1 2.0891 -3.9055 -3.4519 15 6 0.9234 -5.3101 -2.1844 16 6 0.0811 -4.9115 -0.9403 17 1 -0.7458 -5.5952 -0.7480 18 6 1.0809 -4.8054 0.2599 19 7 -0.3790 -3.5397 -1.2408 20 6 -1.4947 -2.9577 -0.7580 21 8 -2.2261 -3.5743 -0.0075 22 6 -1.8284 -1.5726 -1.1401 23 6 -2.9558 -0.8356 -0.7164 24 6 -2.8703 0.4055 -1.3134 25 6 -3.7055 1.5445 -1.2513 26 6 -3.3722 2.6530 -1.9602 27 6 -2.1978 2.6578 -2.7374 28 6 -1.4060 1.5712 -2.7878 29 7 -1.7256 0.4357 -2.0827 30 6 -1.0969 -0.7559 -1.9790 31 6 0.5926 -2.9162 -2.1520 32 1 -0.4851 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0016 34 1 3.3656 -4.7427 -1.3235 35 1 3.3825 -2.9773 -1.5586 36 1 0.2868 -5.5737 -3.0290 37 1 1.6162 -6.1176 -1.9479 38 1 1.6334 -5.7405 0.3510 39 1 0.5304 -4.6162 1.1815 40 1 -3.7356 -1.1778 -0.0522 41 1 -4.6017 1.5315 -0.6487 42 1 -4.0026 3.5293 -1.9250 43 1 -1.9307 3.5413 -3.2983 44 1 -0.5092 1.5916 -3.3891 45 1 -0.1742 -1.0251 -2.4716 46 1 0.0993 -2.6236 -3.0789 47 1 1.0412 -2.0435 -1.6776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095008844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:56 Heat of formation + Delta-G solvation = 122.090118 kcal Electronic energy + Delta-G solvation = -32262.459024 eV Core-core repulsion = 28413.985477 eV Total energy + Delta-G solvation = -3848.473547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.90039 -42.02357 -39.11364 -37.02375 -35.88368 -34.33639 -33.63084 -32.69905 -32.04554 -30.50202 -29.20224 -28.29057 -26.70925 -25.41623 -25.06524 -23.45468 -22.64864 -22.42681 -21.69773 -20.35505 -19.78138 -19.10082 -18.11372 -17.89251 -16.99567 -16.71194 -16.50293 -16.20348 -16.08553 -15.56856 -15.35541 -15.10056 -15.03671 -14.78217 -14.44704 -14.31480 -13.84668 -13.67605 -13.41466 -13.21817 -13.07115 -13.03349 -12.87023 -12.79333 -12.60843 -12.48322 -12.33794 -12.23987 -12.05663 -11.94540 -11.63578 -11.41590 -11.16744 -11.06020 -10.95027 -10.71998 -10.43478 -9.39372 -9.00283 -8.53208 -7.96389 -7.40770 -5.01811 0.11650 0.85451 1.43824 1.47087 1.51629 1.54244 2.09748 2.40407 2.60110 2.88457 2.98388 3.53092 3.67049 3.76248 3.85650 3.91701 4.14816 4.18148 4.19333 4.22436 4.31768 4.41055 4.43934 4.51746 4.53022 4.57984 4.72231 4.80921 4.85339 4.86135 4.97899 5.01283 5.11537 5.15376 5.16815 5.27093 5.33168 5.42737 5.44679 5.46599 5.50099 5.62518 5.64492 5.66631 5.81927 5.93519 6.20531 6.32667 6.36618 6.78264 6.82023 7.45992 7.49680 8.21179 8.51638 9.35828 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.006047 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.219404 B = 4629.041716 C = 5849.042166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.057 4.057 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.306 1.306 6 H -0.301 1.301 7 C -0.232 4.232 8 H 0.069 0.931 9 N -0.736 5.736 10 C 0.160 3.840 11 H 0.024 0.976 12 C -0.117 4.117 13 C -0.085 4.085 14 H 0.117 0.883 15 C -0.109 4.109 16 C 0.121 3.879 17 H 0.083 0.917 18 C -0.127 4.127 19 N -0.593 5.593 20 C 0.596 3.404 21 O -0.614 6.614 22 C -0.182 4.182 23 C -0.161 4.161 24 C -0.001 4.001 25 C -0.093 4.093 26 C -0.142 4.142 27 C -0.151 4.151 28 C 0.030 3.970 29 N -0.346 5.346 30 C 0.114 3.886 31 C 0.053 3.947 32 H 0.247 0.753 33 H 0.389 0.611 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.025 0.975 40 H 0.122 0.878 41 H 0.146 0.854 42 H 0.156 0.844 43 H 0.170 0.830 44 H 0.167 0.833 45 H 0.174 0.826 46 H 0.038 0.962 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -2.096 -10.830 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.252 4.252 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.233 1.233 6 H -0.229 1.229 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.387 5.387 10 C 0.052 3.948 11 H 0.041 0.959 12 C -0.156 4.156 13 C -0.103 4.103 14 H 0.135 0.865 15 C -0.146 4.146 16 C 0.018 3.982 17 H 0.102 0.898 18 C -0.165 4.165 19 N -0.325 5.325 20 C 0.390 3.610 21 O -0.500 6.500 22 C -0.188 4.188 23 C -0.186 4.186 24 C -0.103 4.103 25 C -0.112 4.112 26 C -0.162 4.162 27 C -0.171 4.171 28 C -0.088 4.088 29 N -0.012 5.012 30 C -0.023 4.023 31 C -0.068 4.068 32 H 0.057 0.943 33 H 0.232 0.768 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.044 0.956 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.174 0.826 43 H 0.187 0.813 44 H 0.184 0.816 45 H 0.191 0.809 46 H 0.056 0.944 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.166 -2.102 -10.510 10.782 hybrid contribution 0.080 1.167 1.109 1.612 sum 1.246 -0.935 -9.401 9.529 Atomic orbital electron populations 1.70027 1.04342 1.24743 1.55043 1.25213 0.96194 0.98765 1.05001 0.85716 0.77377 0.81960 0.77610 1.19983 1.23293 1.22914 1.19437 0.91284 0.85181 1.40455 0.91278 1.44015 1.07443 1.00542 1.86663 1.20470 0.92813 0.85577 0.95921 0.95853 1.22119 0.97022 1.01645 0.94818 1.22539 0.94526 0.93485 0.99791 0.86525 1.23028 0.98345 0.97730 0.95546 1.22986 0.95467 0.83267 0.96507 0.89849 1.22671 0.97334 0.99804 0.96741 1.48479 1.21968 1.14999 1.47050 1.17489 0.79121 0.85529 0.78845 1.90607 1.52701 1.66547 1.40109 1.18782 0.99962 0.94184 1.05898 1.20715 1.00194 0.93158 1.04580 1.18627 0.91945 0.96920 1.02842 1.20792 0.99098 0.91138 1.00151 1.21117 0.98077 0.98713 0.98310 1.20967 0.95694 0.98025 1.02461 1.22028 1.01944 0.86062 0.98798 1.41155 1.18284 1.10018 1.31717 1.22151 0.96460 0.82991 1.00707 1.23632 0.89692 1.02437 0.91068 0.94293 0.76783 0.89691 0.92662 0.90143 0.87086 0.87597 0.95573 0.86019 0.83648 0.82633 0.81297 0.81574 0.80917 0.94437 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.03 7.45 21.65 0.16 -46.86 16 2 C -0.06 -2.88 5.39 84.86 0.46 -2.42 16 3 Si 0.94 42.46 29.55 68.60 2.03 44.49 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.31 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 7 C -0.23 -11.39 8.00 84.03 0.67 -10.72 16 8 H 0.07 3.32 7.79 -2.91 -0.02 3.30 16 9 N -0.74 -33.77 2.78 -322.91 -0.90 -34.67 16 10 C 0.16 5.91 3.12 44.99 0.14 6.05 16 11 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 12 C -0.12 -3.32 5.21 30.93 0.16 -3.16 16 13 C -0.08 -2.23 4.27 -9.05 -0.04 -2.26 16 14 H 0.12 2.41 8.14 -2.39 -0.02 2.40 16 15 C -0.11 -2.54 6.22 32.27 0.20 -2.34 16 16 C 0.12 4.02 4.12 46.83 0.19 4.21 16 17 H 0.08 2.89 8.01 -2.39 -0.02 2.87 16 18 C -0.13 -4.29 5.50 31.83 0.18 -4.12 16 19 N -0.59 -23.83 1.74 -782.36 -1.36 -25.19 16 20 C 0.60 28.98 6.20 86.68 0.54 29.52 16 21 O -0.61 -33.62 17.17 -4.01 -0.07 -33.69 16 22 C -0.18 -8.56 4.47 -20.15 -0.09 -8.65 16 23 C -0.16 -7.48 10.71 22.94 0.25 -7.23 16 24 C 0.00 -0.05 6.23 38.90 0.24 0.20 16 25 C -0.09 -3.05 10.11 22.46 0.23 -2.83 16 26 C -0.14 -3.85 10.07 22.32 0.22 -3.63 16 27 C -0.15 -4.03 9.97 22.06 0.22 -3.81 16 28 C 0.03 0.95 10.89 82.97 0.90 1.85 16 29 N -0.35 -13.61 2.06 -345.08 -0.71 -14.32 16 30 C 0.11 4.86 6.91 84.14 0.58 5.44 16 31 C 0.05 1.89 3.49 86.85 0.30 2.20 16 32 H 0.25 13.45 7.20 -92.71 -0.67 12.78 16 33 H 0.39 19.34 2.99 -92.71 -0.28 19.06 16 34 H 0.08 1.86 8.01 -2.39 -0.02 1.84 16 35 H 0.05 1.72 7.72 -2.39 -0.02 1.71 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 1.92 7.83 -2.39 -0.02 1.90 16 38 H 0.11 2.69 8.04 -2.39 -0.02 2.67 16 39 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.12 5.64 8.06 -2.91 -0.02 5.62 16 41 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.17 4.46 8.06 -2.91 -0.02 4.43 16 45 H 0.17 7.09 4.36 -2.91 -0.01 7.08 16 46 H 0.04 1.27 6.86 -2.39 -0.02 1.25 16 47 H 0.14 6.04 2.70 -21.10 -0.06 5.98 16 Total: -1.00 -68.53 347.30 5.28 -63.25 By element: Atomic # 1 Polarization: 47.91 SS G_CDS: 0.78 Total: 48.68 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.36 Total: -1.69 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -2.81 Total: -121.04 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.07 Total: -33.69 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -68.53 5.28 -63.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095008844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.336 kcal (2) G-P(sol) polarization free energy of solvation -68.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds