Wall clock time and date at job start Tue Mar 31 2020 22:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00435 * 2 1 4 4 H 1.48498 * 109.47601 * 239.99973 * 3 2 1 5 5 H 1.48501 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47029 * 119.99698 * 3 2 1 7 7 C 1.38819 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99577 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.47223 * 126.69740 * 0.02562 * 9 7 2 11 11 C 1.53800 * 106.35352 * 148.76041 * 10 9 7 12 12 H 1.09002 * 111.63291 * 257.33217 * 11 10 9 13 13 C 1.54189 * 109.81529 * 132.99106 * 11 10 9 14 14 C 1.54089 * 104.66611 * 223.86768 * 13 11 10 15 15 C 1.54853 * 103.09883 * 37.11033 * 14 13 11 16 16 C 1.54185 * 104.30036 * 322.47036 * 15 14 13 17 17 N 1.46507 * 112.24643 * 261.21110 * 16 15 14 18 18 C 1.34770 * 119.99997 * 299.45576 * 17 16 15 19 19 O 1.21599 * 120.00101 * 0.02562 * 18 17 16 20 20 C 1.47498 * 120.00000 * 179.97438 * 18 17 16 21 21 C 1.41196 * 126.37225 * 359.68377 * 20 18 17 22 22 C 1.37999 * 106.86850 * 179.89764 * 21 20 18 23 23 C 1.41386 * 131.98819 * 180.09204 * 22 21 20 24 24 C 1.35738 * 119.33189 * 180.30233 * 23 22 21 25 25 C 1.40828 * 119.72061 * 0.02562 * 24 23 22 26 26 C 1.34535 * 120.58433 * 359.97438 * 25 24 23 27 27 N 1.37442 * 120.74312 * 0.02562 * 26 25 24 28 28 C 1.35126 * 131.28361 * 179.97438 * 27 26 25 29 29 C 1.47219 * 126.70519 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99496 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.08072 * 29.53973 * 10 9 7 32 32 H 1.09000 * 110.08175 * 267.98181 * 10 9 7 33 33 H 1.09001 * 110.46593 * 341.45875 * 13 11 10 34 34 H 1.09003 * 110.46463 * 104.05461 * 13 11 10 35 35 H 1.08994 * 110.06265 * 278.91881 * 14 13 11 36 36 H 1.08998 * 111.26170 * 155.86399 * 14 13 11 37 37 H 1.08999 * 110.46346 * 203.76253 * 15 14 13 38 38 H 1.09003 * 110.46471 * 81.17554 * 15 14 13 39 39 H 0.96999 * 119.99375 * 119.44937 * 17 16 15 40 40 H 1.08000 * 126.56721 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.33190 * 0.28179 * 23 22 21 42 42 H 1.07998 * 120.14168 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.70852 * 179.97438 * 25 24 23 44 44 H 1.08004 * 119.63107 * 180.02562 * 26 25 24 45 45 H 1.07996 * 125.61417 * 0.04188 * 28 27 26 46 46 H 1.08996 * 110.08049 * 92.00899 * 29 9 7 47 47 H 1.09000 * 110.07525 * 330.45994 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1366 -2.5598 -0.0005 11 6 -0.4196 -3.8635 -0.7659 12 1 -0.7713 -3.6667 -1.7787 13 6 -1.4220 -4.7273 0.0256 14 6 -0.8501 -6.1561 -0.0494 15 6 0.6787 -5.9275 0.0426 16 6 0.9201 -4.6370 -0.7659 17 7 1.3856 -4.9142 -2.1271 18 6 2.5399 -5.5819 -2.3217 19 8 3.1949 -5.9548 -1.3675 20 6 3.0083 -5.8614 -3.6922 21 6 2.3550 -5.4995 -4.8904 22 6 3.1416 -5.9549 -5.9287 23 6 2.9919 -5.8790 -7.3326 24 6 3.9388 -6.4313 -8.1331 25 6 5.0535 -7.0709 -7.5573 26 6 5.1886 -7.1390 -6.2204 27 7 4.2429 -6.5871 -5.3897 28 6 4.1635 -6.5317 -4.0419 29 6 1.9077 -3.7403 -0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6122 -1.7189 -0.5052 32 1 -0.5042 -2.6393 1.0226 33 1 -1.4608 -4.4081 1.0672 34 1 -2.4119 -4.6740 -0.4275 35 1 -1.1155 -6.6155 -1.0015 36 1 -1.2003 -6.7663 0.7832 37 1 1.2166 -6.7636 -0.4044 38 1 0.9816 -5.7894 1.0805 39 1 0.8628 -4.6171 -2.8883 40 1 1.4198 -4.9663 -4.9777 41 1 2.1327 -5.3867 -7.7636 42 1 3.8377 -6.3805 -9.2072 43 1 5.8065 -7.5107 -8.1944 44 1 6.0499 -7.6328 -5.7952 45 1 4.8854 -6.9430 -3.3519 46 1 2.0227 -4.0982 1.0225 47 1 2.8738 -3.7318 -0.5053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099060294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:19 Heat of formation + Delta-G solvation = 70.168957 kcal Electronic energy + Delta-G solvation = -29484.419442 eV Core-core repulsion = 25633.694425 eV Total energy + Delta-G solvation = -3850.725017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.32281 -40.01615 -37.99193 -36.45054 -34.46468 -33.53249 -32.99932 -31.37150 -30.27484 -29.25923 -27.93444 -27.64371 -24.77741 -24.66599 -23.91405 -22.65663 -21.90780 -20.85167 -20.19187 -19.04332 -18.70141 -17.83605 -17.17536 -16.54513 -16.30068 -15.63623 -15.58138 -15.24089 -14.86816 -14.68870 -14.59858 -14.23704 -13.89807 -13.69809 -13.39452 -13.29146 -12.59153 -12.53804 -12.36682 -12.14379 -11.84646 -11.58470 -11.55428 -11.32970 -11.15564 -10.91165 -10.72854 -10.68586 -10.63070 -10.52061 -10.19749 -10.14938 -9.88186 -9.68180 -9.49629 -9.34508 -8.72032 -8.66185 -8.39621 -7.55595 -6.78953 -5.58043 -3.02071 0.55875 1.18634 2.15027 2.47441 3.28960 3.44310 3.47990 3.49650 3.64951 3.81366 4.27577 4.53130 4.54502 4.59799 4.76545 4.86022 4.95326 5.10444 5.15707 5.30991 5.31228 5.40103 5.54191 5.59711 5.70674 5.78194 5.86561 5.90318 5.92938 5.97584 6.07948 6.08812 6.13029 6.15530 6.25768 6.34467 6.50886 6.54986 6.57536 6.65157 6.70325 6.77884 6.85457 6.93896 7.08122 7.29112 7.52937 7.67642 7.87212 8.02769 8.45852 8.69060 9.27788 9.88207 10.56401 11.42878 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.003315 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.923546 B = 8445.359003 C = 9921.058602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.213 4.213 8 H 0.076 0.924 9 N -0.597 5.597 10 C 0.141 3.859 11 C -0.112 4.112 12 H 0.072 0.928 13 C -0.113 4.113 14 C -0.124 4.124 15 C -0.117 4.117 16 C 0.162 3.838 17 N -0.696 5.696 18 C 0.585 3.415 19 O -0.543 6.543 20 C -0.162 4.162 21 C -0.161 4.161 22 C 0.024 3.976 23 C -0.073 4.073 24 C -0.139 4.139 25 C -0.139 4.139 26 C 0.043 3.957 27 N -0.343 5.343 28 C 0.017 3.983 29 C 0.136 3.864 30 H 0.252 0.748 31 H 0.123 0.877 32 H 0.012 0.988 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.397 0.603 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.161 0.839 45 H 0.181 0.819 46 H 0.026 0.974 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -16.379 -14.726 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.342 4.342 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.015 3.985 11 C -0.132 4.132 12 H 0.091 0.909 13 C -0.151 4.151 14 C -0.161 4.161 15 C -0.155 4.155 16 C 0.075 3.925 17 N -0.345 5.345 18 C 0.371 3.629 19 O -0.422 6.422 20 C -0.169 4.169 21 C -0.185 4.185 22 C -0.080 4.080 23 C -0.092 4.092 24 C -0.159 4.159 25 C -0.159 4.159 26 C -0.075 4.075 27 N -0.007 5.007 28 C -0.117 4.117 29 C 0.008 3.992 30 H 0.063 0.937 31 H 0.140 0.860 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.231 0.769 40 H 0.170 0.830 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.162 0.838 44 H 0.178 0.822 45 H 0.198 0.802 46 H 0.044 0.956 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.890 -16.480 -14.082 22.023 hybrid contribution 0.353 0.959 -0.447 1.116 sum 4.243 -15.521 -14.530 21.679 Atomic orbital electron populations 1.69594 1.04818 1.24642 1.58252 1.24744 0.95701 0.97568 1.02822 0.86140 0.78382 0.83054 0.77892 1.21276 1.21582 1.21256 1.19072 0.90453 0.82358 1.42271 0.90591 1.44572 1.01824 0.99746 1.85948 1.22040 0.85535 0.94390 0.96498 1.23007 0.92293 0.97879 1.00060 0.90918 1.22287 0.97852 0.94272 1.00728 1.22400 0.95820 0.97114 1.00800 1.22635 0.95411 0.97199 1.00287 1.21710 0.95260 0.94386 0.81100 1.45765 1.23138 1.56901 1.08688 1.17307 0.80771 0.77829 0.86953 1.90755 1.55987 1.53015 1.42459 1.19710 0.97349 1.06237 0.93594 1.21238 1.01289 1.06333 0.89649 1.18787 0.90637 1.04937 0.93609 1.20678 0.99890 0.98966 0.89627 1.20912 0.94599 1.00059 1.00330 1.20700 0.99899 1.02155 0.93145 1.21670 0.94174 1.00826 0.90866 1.41320 1.16472 1.36563 1.06355 1.22010 1.01395 1.07157 0.81139 1.21683 0.95321 0.85889 0.96258 0.93723 0.86015 0.97056 0.91315 0.91996 0.92341 0.92040 0.91273 0.90769 0.76855 0.83038 0.83962 0.84978 0.83835 0.82183 0.80187 0.95623 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.08 55.49 0.56 -26.33 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.21 -6.12 10.34 -15.06 -0.16 -6.28 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.78 3.39 -171.10 -0.58 -16.36 16 10 C 0.14 3.41 5.79 -3.23 -0.02 3.39 16 11 C -0.11 -2.11 3.64 -88.69 -0.32 -2.44 16 12 H 0.07 1.30 7.69 -51.93 -0.40 0.90 16 13 C -0.11 -1.79 6.34 -25.54 -0.16 -1.96 16 14 C -0.12 -1.77 6.86 -25.19 -0.17 -1.95 16 15 C -0.12 -1.97 5.65 -25.13 -0.14 -2.12 16 16 C 0.16 3.06 0.93 -129.89 -0.12 2.94 16 17 N -0.70 -11.88 5.24 -46.86 -0.25 -12.12 16 18 C 0.58 10.29 6.83 -12.49 -0.09 10.20 16 19 O -0.54 -11.01 14.47 5.28 0.08 -10.94 16 20 C -0.16 -2.41 6.12 -105.06 -0.64 -3.06 16 21 C -0.16 -2.08 10.44 -38.55 -0.40 -2.49 16 22 C 0.02 0.29 6.70 -84.00 -0.56 -0.28 16 23 C -0.07 -0.67 10.11 -39.28 -0.40 -1.07 16 24 C -0.14 -1.06 10.07 -39.50 -0.40 -1.46 16 25 C -0.14 -0.99 9.97 -39.91 -0.40 -1.38 16 26 C 0.04 0.36 10.89 -16.35 -0.18 0.18 16 27 N -0.34 -3.99 2.92 -60.42 -0.18 -4.17 16 28 C 0.02 0.22 11.37 -16.16 -0.18 0.03 16 29 C 0.14 3.15 6.02 -3.24 -0.02 3.13 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.12 3.31 5.45 -51.93 -0.28 3.02 16 32 H 0.01 0.29 7.19 -51.93 -0.37 -0.08 16 33 H 0.07 1.14 7.23 -51.93 -0.38 0.77 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.20 6.69 -51.93 -0.35 0.85 16 38 H 0.07 1.30 7.17 -51.93 -0.37 0.93 16 39 H 0.40 5.95 7.25 -40.82 -0.30 5.66 16 40 H 0.15 1.67 7.53 -52.49 -0.40 1.27 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.18 2.09 8.06 -52.49 -0.42 1.66 16 46 H 0.03 0.61 7.12 -51.93 -0.37 0.24 16 47 H 0.05 1.19 6.84 -51.93 -0.36 0.83 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -33.83 371.55 -10.74 -44.58 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.50 Total: 7.32 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -4.46 Total: -5.07 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.44 Total: -58.98 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.83 -10.74 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099060294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.746 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds