Wall clock time and date at job start Tue Mar 31 2020 22:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00435 * 2 1 4 4 H 1.48498 * 109.47601 * 239.99973 * 3 2 1 5 5 H 1.48501 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47029 * 119.99698 * 3 2 1 7 7 C 1.38819 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99577 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.47223 * 126.69740 * 0.02562 * 9 7 2 11 11 C 1.53800 * 106.35352 * 148.76041 * 10 9 7 12 12 H 1.09002 * 111.63291 * 257.33217 * 11 10 9 13 13 C 1.54189 * 109.81529 * 132.99106 * 11 10 9 14 14 C 1.54089 * 104.66611 * 223.86768 * 13 11 10 15 15 C 1.54853 * 103.09883 * 37.11033 * 14 13 11 16 16 C 1.54185 * 104.30036 * 322.47036 * 15 14 13 17 17 N 1.46507 * 112.24643 * 261.21110 * 16 15 14 18 18 C 1.34770 * 119.99997 * 299.45576 * 17 16 15 19 19 O 1.21599 * 120.00101 * 0.02562 * 18 17 16 20 20 C 1.47498 * 120.00000 * 179.97438 * 18 17 16 21 21 C 1.41196 * 126.37225 * 359.68377 * 20 18 17 22 22 C 1.37999 * 106.86850 * 179.89764 * 21 20 18 23 23 C 1.41386 * 131.98819 * 180.09204 * 22 21 20 24 24 C 1.35738 * 119.33189 * 180.30233 * 23 22 21 25 25 C 1.40828 * 119.72061 * 0.02562 * 24 23 22 26 26 C 1.34535 * 120.58433 * 359.97438 * 25 24 23 27 27 N 1.37442 * 120.74312 * 0.02562 * 26 25 24 28 28 C 1.35126 * 131.28361 * 179.97438 * 27 26 25 29 29 C 1.47219 * 126.70519 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99496 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.08072 * 29.53973 * 10 9 7 32 32 H 1.09000 * 110.08175 * 267.98181 * 10 9 7 33 33 H 1.09001 * 110.46593 * 341.45875 * 13 11 10 34 34 H 1.09003 * 110.46463 * 104.05461 * 13 11 10 35 35 H 1.08994 * 110.06265 * 278.91881 * 14 13 11 36 36 H 1.08998 * 111.26170 * 155.86399 * 14 13 11 37 37 H 1.08999 * 110.46346 * 203.76253 * 15 14 13 38 38 H 1.09003 * 110.46471 * 81.17554 * 15 14 13 39 39 H 0.96999 * 119.99375 * 119.44937 * 17 16 15 40 40 H 1.08000 * 126.56721 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.33190 * 0.28179 * 23 22 21 42 42 H 1.07998 * 120.14168 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.70852 * 179.97438 * 25 24 23 44 44 H 1.08004 * 119.63107 * 180.02562 * 26 25 24 45 45 H 1.07996 * 125.61417 * 0.04188 * 28 27 26 46 46 H 1.08996 * 110.08049 * 92.00899 * 29 9 7 47 47 H 1.09000 * 110.07525 * 330.45994 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1366 -2.5598 -0.0005 11 6 -0.4196 -3.8635 -0.7659 12 1 -0.7713 -3.6667 -1.7787 13 6 -1.4220 -4.7273 0.0256 14 6 -0.8501 -6.1561 -0.0494 15 6 0.6787 -5.9275 0.0426 16 6 0.9201 -4.6370 -0.7659 17 7 1.3856 -4.9142 -2.1271 18 6 2.5399 -5.5819 -2.3217 19 8 3.1949 -5.9548 -1.3675 20 6 3.0083 -5.8614 -3.6922 21 6 2.3550 -5.4995 -4.8904 22 6 3.1416 -5.9549 -5.9287 23 6 2.9919 -5.8790 -7.3326 24 6 3.9388 -6.4313 -8.1331 25 6 5.0535 -7.0709 -7.5573 26 6 5.1886 -7.1390 -6.2204 27 7 4.2429 -6.5871 -5.3897 28 6 4.1635 -6.5317 -4.0419 29 6 1.9077 -3.7403 -0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6122 -1.7189 -0.5052 32 1 -0.5042 -2.6393 1.0226 33 1 -1.4608 -4.4081 1.0672 34 1 -2.4119 -4.6740 -0.4275 35 1 -1.1155 -6.6155 -1.0015 36 1 -1.2003 -6.7663 0.7832 37 1 1.2166 -6.7636 -0.4044 38 1 0.9816 -5.7894 1.0805 39 1 0.8628 -4.6171 -2.8883 40 1 1.4198 -4.9663 -4.9777 41 1 2.1327 -5.3867 -7.7636 42 1 3.8377 -6.3805 -9.2072 43 1 5.8065 -7.5107 -8.1944 44 1 6.0499 -7.6328 -5.7952 45 1 4.8854 -6.9430 -3.3519 46 1 2.0227 -4.0982 1.0225 47 1 2.8738 -3.7318 -0.5053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099060294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:18 Heat of formation + Delta-G solvation = 50.500050 kcal Electronic energy + Delta-G solvation = -29485.272350 eV Core-core repulsion = 25633.694425 eV Total energy + Delta-G solvation = -3851.577925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.17537 -41.51249 -39.41330 -37.26975 -36.33163 -34.77821 -33.94778 -33.38309 -31.35310 -30.72104 -29.37961 -28.68726 -26.47308 -26.34225 -25.04845 -23.69417 -22.72531 -22.37938 -21.76768 -20.35879 -20.20348 -19.04844 -18.63059 -17.79945 -17.17732 -17.06378 -16.74687 -16.55569 -16.19611 -16.10846 -15.60140 -15.49762 -15.29639 -15.07954 -15.02753 -14.41811 -14.23221 -13.95175 -13.44066 -13.41056 -13.17830 -12.95740 -12.91051 -12.77019 -12.44677 -12.42141 -12.29701 -12.19598 -12.03567 -11.84691 -11.77048 -11.65266 -11.43645 -11.38738 -11.24029 -10.84708 -10.78166 -10.01662 -9.55382 -8.91117 -8.35149 -7.75715 -5.24138 -0.16689 0.38694 1.10902 1.44177 1.47491 1.54149 1.64127 2.34419 2.48106 2.52719 2.62014 3.29314 3.45411 3.58483 3.61617 3.76861 3.88748 3.90926 4.02029 4.05530 4.21164 4.29917 4.37460 4.41681 4.46295 4.54610 4.57272 4.62996 4.74694 4.85207 4.85993 4.88951 4.93936 4.98394 5.06939 5.15057 5.23785 5.24937 5.30569 5.33528 5.41540 5.42300 5.51185 5.60961 5.65110 5.77031 5.81846 5.90216 6.28200 6.36080 6.67483 7.10251 7.33470 7.74525 8.42914 9.21998 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011000 B = 0.003315 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.923546 B = 8445.359003 C = 9921.058602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.059 4.059 3 Si 0.980 3.020 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.068 0.932 9 N -0.617 5.617 10 C 0.145 3.855 11 C -0.103 4.103 12 H 0.086 0.914 13 C -0.107 4.107 14 C -0.108 4.108 15 C -0.113 4.113 16 C 0.171 3.829 17 N -0.692 5.692 18 C 0.583 3.417 19 O -0.579 6.579 20 C -0.190 4.190 21 C -0.181 4.181 22 C 0.020 3.980 23 C -0.097 4.097 24 C -0.124 4.124 25 C -0.129 4.129 26 C 0.020 3.980 27 N -0.343 5.343 28 C 0.003 3.997 29 C 0.137 3.863 30 H 0.250 0.750 31 H 0.094 0.906 32 H -0.009 1.009 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.407 0.593 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.182 0.818 44 H 0.187 0.813 45 H 0.187 0.813 46 H 0.014 0.986 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 -17.783 -17.784 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.252 4.252 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.341 5.341 10 C 0.020 3.980 11 C -0.123 4.123 12 H 0.104 0.896 13 C -0.145 4.145 14 C -0.146 4.146 15 C -0.152 4.152 16 C 0.084 3.916 17 N -0.341 5.341 18 C 0.372 3.628 19 O -0.461 6.461 20 C -0.198 4.198 21 C -0.205 4.205 22 C -0.085 4.085 23 C -0.116 4.116 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.097 4.097 27 N -0.007 5.007 28 C -0.131 4.131 29 C 0.010 3.990 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.009 0.991 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.244 0.756 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.183 0.817 43 H 0.199 0.801 44 H 0.204 0.796 45 H 0.204 0.796 46 H 0.032 0.968 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.903 -17.909 -17.169 25.114 hybrid contribution 0.488 1.376 0.352 1.502 sum 4.391 -16.533 -16.816 23.987 Atomic orbital electron populations 1.69843 1.05866 1.25136 1.58269 1.25546 0.96701 1.00529 1.02426 0.85136 0.77242 0.78861 0.77973 1.20575 1.21076 1.20810 1.19329 0.90566 0.83901 1.43231 0.91405 1.44825 1.02957 1.00230 1.86124 1.21882 0.84134 0.96268 0.95716 1.22892 0.93273 0.95647 1.00493 0.89551 1.22251 0.98237 0.94346 0.99668 1.22345 0.92898 0.96439 1.02902 1.22575 0.97879 0.95709 0.99036 1.21501 0.93702 0.94552 0.81892 1.45660 1.23435 1.56820 1.08226 1.17734 0.80254 0.76947 0.87870 1.90718 1.56909 1.54565 1.43898 1.19535 0.99009 1.08643 0.92569 1.21369 1.02225 1.07530 0.89327 1.19189 0.90357 1.04170 0.94778 1.20995 1.01654 1.00539 0.88400 1.21438 0.93510 0.97574 1.01924 1.21273 1.00176 1.00491 0.92904 1.22366 0.94564 1.01320 0.91472 1.41495 1.16969 1.36220 1.05976 1.22046 1.01249 1.07558 0.82253 1.21743 0.95461 0.85675 0.96090 0.93981 0.88813 0.99090 0.92439 0.89232 0.90402 0.89630 0.91622 0.91943 0.75636 0.82007 0.82124 0.81744 0.80072 0.79569 0.79633 0.96798 0.95849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 10.08 21.65 0.22 -56.10 16 2 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 3 Si 0.98 47.14 29.55 68.60 2.03 49.16 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.24 -14.48 10.34 84.04 0.87 -13.61 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.62 -34.27 3.39 -695.25 -2.36 -36.63 16 10 C 0.15 7.31 5.79 86.51 0.50 7.81 16 11 C -0.10 -3.89 3.64 -9.54 -0.03 -3.93 16 12 H 0.09 3.03 7.69 -2.39 -0.02 3.02 16 13 C -0.11 -3.22 6.34 31.37 0.20 -3.02 16 14 C -0.11 -2.86 6.86 31.60 0.22 -2.64 16 15 C -0.11 -3.84 5.65 31.63 0.18 -3.66 16 16 C 0.17 6.62 0.93 4.85 0.00 6.63 16 17 N -0.69 -24.28 5.24 -420.44 -2.20 -26.48 16 18 C 0.58 21.47 6.83 86.69 0.59 22.06 16 19 O -0.58 -24.83 14.47 -4.03 -0.06 -24.88 16 20 C -0.19 -5.89 6.12 -20.15 -0.12 -6.01 16 21 C -0.18 -4.74 10.44 22.94 0.24 -4.50 16 22 C 0.02 0.46 6.70 38.90 0.26 0.72 16 23 C -0.10 -1.57 10.11 22.47 0.23 -1.34 16 24 C -0.12 -1.39 10.07 22.32 0.22 -1.17 16 25 C -0.13 -1.30 9.97 22.06 0.22 -1.08 16 26 C 0.02 0.29 10.89 82.97 0.90 1.19 16 27 N -0.34 -7.67 2.92 -345.06 -1.01 -8.68 16 28 C 0.00 0.08 11.37 84.14 0.96 1.04 16 29 C 0.14 6.73 6.02 86.51 0.52 7.25 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.09 5.29 5.45 -2.39 -0.01 5.28 16 32 H -0.01 -0.47 7.19 -2.39 -0.02 -0.48 16 33 H 0.06 1.87 7.23 -2.39 -0.02 1.86 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 37 H 0.07 2.29 6.69 -2.39 -0.02 2.27 16 38 H 0.06 2.24 7.17 -2.39 -0.02 2.22 16 39 H 0.41 12.38 7.25 -92.71 -0.67 11.71 16 40 H 0.16 3.60 7.53 -2.91 -0.02 3.57 16 41 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 43 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 44 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 45 H 0.19 4.52 8.06 -2.91 -0.02 4.50 16 46 H 0.01 0.72 7.12 -2.39 -0.02 0.70 16 47 H 0.02 1.23 6.84 -2.39 -0.02 1.22 16 Total: -1.00 -77.90 371.55 3.37 -74.53 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.33 Total: 26.32 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 6.42 Total: 2.76 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -5.35 Total: -127.89 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.06 Total: -24.88 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.90 3.37 -74.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099060294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.029 kcal (2) G-P(sol) polarization free energy of solvation -77.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds