Wall clock time and date at job start Tue Mar 31 2020 22:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48498 * 109.47134 * 239.99799 * 3 2 1 5 5 H 1.48497 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47161 * 119.99719 * 3 2 1 7 7 C 1.38948 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00311 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99982 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00055 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47160 * 179.97438 * 12 10 9 14 14 C 1.46900 * 111.00037 * 179.97438 * 13 12 10 15 15 C 1.53787 * 113.61713 * 154.99779 * 14 13 12 16 16 C 1.53781 * 87.07987 * 140.06528 * 15 14 13 17 17 C 1.52995 * 113.61293 * 219.93573 * 16 15 14 18 18 N 1.46500 * 109.47108 * 183.47228 * 17 16 15 19 19 C 1.34783 * 120.00119 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99624 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00012 * 179.97438 * 19 18 17 22 22 H 1.08999 * 110.49335 * 38.75992 * 21 19 18 23 23 C 1.54106 * 110.55052 * 275.89804 * 21 19 18 24 24 N 1.47053 * 103.86185 * 241.40668 * 23 21 19 25 25 C 1.33945 * 109.18278 * 0.02562 * 24 23 21 26 26 O 1.21584 * 123.04637 * 180.02562 * 25 24 23 27 27 N 1.33949 * 113.91607 * 359.97438 * 25 24 23 28 28 C 1.53779 * 113.69049 * 252.53571 * 14 13 12 29 29 H 0.96997 * 120.00124 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99957 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47544 * 59.99230 * 12 10 9 32 32 H 1.09002 * 109.46889 * 299.99808 * 12 10 9 33 33 H 1.00905 * 111.00279 * 56.04539 * 13 12 10 34 34 H 1.09003 * 112.85290 * 23.80327 * 14 13 12 35 35 H 1.09005 * 113.61051 * 25.51932 * 15 14 13 36 36 H 1.08996 * 113.69311 * 254.62561 * 15 14 13 37 37 H 1.09002 * 113.61228 * 89.11929 * 16 15 14 38 38 H 1.09005 * 109.47501 * 303.47224 * 17 16 15 39 39 H 1.09004 * 109.47494 * 63.47236 * 17 16 15 40 40 H 0.96997 * 120.00462 * 0.02562 * 18 17 16 41 41 H 1.09001 * 110.54606 * 0.02562 * 23 21 19 42 42 H 1.08997 * 110.54808 * 122.81221 * 23 21 19 43 43 H 0.97004 * 125.40729 * 180.02562 * 24 23 21 44 44 H 0.96994 * 125.41647 * 179.97438 * 27 25 24 45 45 H 1.09003 * 113.61775 * 105.46444 * 28 14 13 46 46 H 1.08996 * 113.61960 * 334.55171 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0011 13 7 2.1985 -5.9795 0.0004 14 6 1.4982 -7.2708 0.0015 15 6 2.3264 -8.4213 -0.5946 16 6 1.7615 -9.3057 0.5295 17 6 2.7895 -10.2685 1.1270 18 7 2.1385 -11.1198 2.1259 19 6 2.8541 -12.0510 2.7872 20 8 4.0372 -12.1838 2.5556 21 6 2.1845 -12.9263 3.8150 22 1 1.1851 -13.2079 3.4835 23 6 2.1239 -12.2103 5.1783 24 7 2.9080 -13.0799 6.0680 25 6 3.3608 -14.1298 5.3703 26 8 4.0401 -15.0098 5.8626 27 7 2.9967 -14.1230 4.0813 28 6 1.5767 -8.0150 1.3450 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6168 -4.9209 -0.8885 32 1 0.6176 -4.9205 0.8914 33 1 2.8340 -5.9124 0.7813 34 1 0.4881 -7.2050 -0.4028 35 1 3.4031 -8.2646 -0.5276 36 1 2.0038 -8.7227 -1.5911 37 1 0.8234 -9.7961 0.2695 38 1 3.2072 -10.8911 0.3358 39 1 3.5888 -9.6985 1.6009 40 1 1.1922 -11.0138 2.3108 41 1 2.5778 -11.2215 5.1117 42 1 1.0936 -12.1364 5.5262 43 1 3.0713 -12.9187 7.0105 44 1 3.2318 -14.7995 3.4272 45 1 0.6475 -7.9877 1.9143 46 1 2.4483 -7.7474 1.9422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100618327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:33 Heat of formation + Delta-G solvation = -63.410518 kcal Electronic energy + Delta-G solvation = -27988.946902 eV Core-core repulsion = 23721.580181 eV Total energy + Delta-G solvation = -4267.366721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81223 -40.08155 -39.22950 -38.08384 -36.67139 -35.30996 -34.10271 -33.52794 -33.27445 -31.23593 -30.27443 -28.11734 -26.33691 -25.85568 -24.49877 -23.92295 -22.27632 -21.73238 -21.21636 -19.99486 -19.13365 -18.52768 -18.09526 -17.89507 -16.91127 -16.52128 -16.21921 -15.99340 -15.92531 -15.52298 -15.09372 -14.95221 -14.56145 -14.51253 -14.32762 -14.21590 -13.88825 -13.80323 -13.54943 -13.24458 -12.82546 -12.63968 -12.60197 -12.42509 -11.86634 -11.59448 -11.56818 -11.17137 -11.04177 -10.89972 -10.76395 -10.58334 -10.54850 -10.46083 -10.23359 -9.90322 -9.55881 -9.52646 -9.40908 -8.48150 -8.05920 -7.98066 -6.44350 -3.85256 1.89316 2.21993 2.47618 2.81220 3.18310 3.24145 3.28630 3.45449 3.63284 3.87903 3.97837 4.05224 4.17614 4.23525 4.28310 4.38241 4.61918 4.62229 4.78076 4.80656 4.88761 5.04060 5.13000 5.18118 5.24577 5.34462 5.51201 5.57578 5.61108 5.74735 5.77981 5.88766 5.93011 6.04292 6.14123 6.28283 6.47521 6.61667 6.82817 6.93648 7.22754 7.52555 7.62108 7.63058 8.03534 8.13710 8.58495 9.15236 9.51423 10.02932 10.73233 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.001499 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.861280 B =18675.969317 C =19210.946451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.657 5.657 14 C 0.068 3.932 15 C -0.117 4.117 16 C -0.125 4.125 17 C 0.130 3.870 18 N -0.721 5.721 19 C 0.498 3.502 20 O -0.519 6.519 21 C 0.104 3.896 22 H 0.117 0.883 23 C 0.105 3.895 24 N -0.738 5.738 25 C 0.706 3.294 26 O -0.582 6.582 27 N -0.715 5.715 28 C -0.165 4.165 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.352 0.648 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.434 0.566 44 H 0.434 0.566 45 H 0.067 0.933 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -24.942 6.783 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.224 3.776 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.288 5.288 14 C -0.043 4.043 15 C -0.156 4.156 16 C -0.144 4.144 17 C 0.007 3.993 18 N -0.374 5.374 19 C 0.281 3.719 20 O -0.393 6.393 21 C -0.007 4.007 22 H 0.134 0.866 23 C -0.021 4.021 24 N -0.402 5.402 25 C 0.405 3.595 26 O -0.459 6.459 27 N -0.378 5.378 28 C -0.204 4.204 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.172 0.828 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.276 0.724 44 H 0.277 0.723 45 H 0.085 0.915 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.293 -25.266 6.171 26.360 hybrid contribution -1.036 0.898 0.929 1.656 sum -5.329 -24.368 7.100 25.935 Atomic orbital electron populations 1.69601 1.05930 1.28273 1.50534 1.25257 0.95636 0.99718 0.97262 0.85913 0.78763 0.80425 0.79095 1.19871 1.20972 1.19925 1.19664 0.93370 0.82271 1.47732 0.87971 1.41862 1.09175 1.04614 1.64341 1.19845 0.88412 0.84772 0.84533 1.90525 1.13790 1.87072 1.55413 1.21710 0.94417 0.91031 1.01050 1.60009 1.18220 0.99555 1.51061 1.22988 0.97572 0.88774 0.94939 1.23063 1.01334 0.93994 0.97195 1.22670 0.99012 0.94226 0.98497 1.21458 0.95359 0.91963 0.90545 1.46016 1.13377 1.36719 1.41282 1.20774 0.87628 0.81233 0.82309 1.90794 1.15181 1.68505 1.64868 1.21861 0.96513 0.86936 0.95411 0.86553 1.22250 0.98264 0.95018 0.86602 1.45052 1.57342 1.24767 1.13047 1.15857 0.79494 0.82418 0.81764 1.91019 1.43025 1.39594 1.72288 1.44826 1.57156 1.25183 1.10608 1.23849 1.02398 0.96288 0.97903 0.91822 0.77477 0.89656 0.93880 0.82781 0.88612 0.89114 0.91030 0.88594 0.91102 0.90913 0.76332 0.89373 0.88441 0.72397 0.72298 0.91456 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 10 C 0.44 10.10 7.82 -10.98 -0.09 10.01 16 11 O -0.58 -15.62 15.78 5.55 0.09 -15.54 16 12 C 0.05 0.83 6.01 -4.98 -0.03 0.80 16 13 N -0.66 -9.72 6.24 -107.13 -0.67 -10.39 16 14 C 0.07 0.69 4.18 -66.90 -0.28 0.41 16 15 C -0.12 -1.00 7.44 -25.92 -0.19 -1.20 16 16 C -0.12 -0.74 3.75 -89.81 -0.34 -1.07 16 17 C 0.13 0.86 5.50 -4.04 -0.02 0.84 16 18 N -0.72 -3.28 5.56 -60.29 -0.33 -3.62 16 19 C 0.50 3.40 6.93 -10.98 -0.08 3.32 16 20 O -0.52 -6.28 16.60 5.56 0.09 -6.18 16 21 C 0.10 0.42 4.17 -68.20 -0.28 0.13 16 22 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 23 C 0.10 0.32 7.70 -3.16 -0.02 0.30 16 24 N -0.74 -4.50 6.37 -64.70 -0.41 -4.92 16 25 C 0.71 7.00 8.92 -88.40 -0.79 6.21 16 26 O -0.58 -8.47 18.05 5.29 0.10 -8.38 16 27 N -0.72 -5.15 5.63 -59.33 -0.33 -5.48 16 28 C -0.17 -1.23 7.25 -25.92 -0.19 -1.42 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 31 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.35 5.44 7.90 -39.29 -0.31 5.13 16 34 H 0.10 0.90 7.87 -51.93 -0.41 0.49 16 35 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 40 H 0.40 0.57 8.47 -40.82 -0.35 0.22 16 41 H 0.09 0.28 7.72 -51.93 -0.40 -0.12 16 42 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.43 1.97 8.96 -40.82 -0.37 1.61 16 44 H 0.43 2.86 8.96 -40.82 -0.37 2.49 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.73 7.61 -51.93 -0.40 0.34 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -38.42 390.26 -9.14 -47.56 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -6.64 Total: 12.32 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -2.55 Total: 10.41 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.08 Total: -61.85 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: 0.28 Total: -30.10 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.42 -9.14 -47.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100618327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.851 kcal (2) G-P(sol) polarization free energy of solvation -38.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds