Wall clock time and date at job start Tue Mar 31 2020 22:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48498 * 109.47134 * 239.99799 * 3 2 1 5 5 H 1.48497 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47161 * 119.99719 * 3 2 1 7 7 C 1.38948 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00311 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99982 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00055 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47160 * 179.97438 * 12 10 9 14 14 C 1.46900 * 111.00037 * 179.97438 * 13 12 10 15 15 C 1.53787 * 113.61713 * 154.99779 * 14 13 12 16 16 C 1.53781 * 87.07987 * 140.06528 * 15 14 13 17 17 C 1.52995 * 113.61293 * 219.93573 * 16 15 14 18 18 N 1.46500 * 109.47108 * 183.47228 * 17 16 15 19 19 C 1.34783 * 120.00119 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99624 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00012 * 179.97438 * 19 18 17 22 22 H 1.08999 * 110.49335 * 38.75992 * 21 19 18 23 23 C 1.54106 * 110.55052 * 275.89804 * 21 19 18 24 24 N 1.47053 * 103.86185 * 241.40668 * 23 21 19 25 25 C 1.33945 * 109.18278 * 0.02562 * 24 23 21 26 26 O 1.21584 * 123.04637 * 180.02562 * 25 24 23 27 27 N 1.33949 * 113.91607 * 359.97438 * 25 24 23 28 28 C 1.53779 * 113.69049 * 252.53571 * 14 13 12 29 29 H 0.96997 * 120.00124 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99957 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47544 * 59.99230 * 12 10 9 32 32 H 1.09002 * 109.46889 * 299.99808 * 12 10 9 33 33 H 1.00905 * 111.00279 * 56.04539 * 13 12 10 34 34 H 1.09003 * 112.85290 * 23.80327 * 14 13 12 35 35 H 1.09005 * 113.61051 * 25.51932 * 15 14 13 36 36 H 1.08996 * 113.69311 * 254.62561 * 15 14 13 37 37 H 1.09002 * 113.61228 * 89.11929 * 16 15 14 38 38 H 1.09005 * 109.47501 * 303.47224 * 17 16 15 39 39 H 1.09004 * 109.47494 * 63.47236 * 17 16 15 40 40 H 0.96997 * 120.00462 * 0.02562 * 18 17 16 41 41 H 1.09001 * 110.54606 * 0.02562 * 23 21 19 42 42 H 1.08997 * 110.54808 * 122.81221 * 23 21 19 43 43 H 0.97004 * 125.40729 * 180.02562 * 24 23 21 44 44 H 0.96994 * 125.41647 * 179.97438 * 27 25 24 45 45 H 1.09003 * 113.61775 * 105.46444 * 28 14 13 46 46 H 1.08996 * 113.61960 * 334.55171 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0011 13 7 2.1985 -5.9795 0.0004 14 6 1.4982 -7.2708 0.0015 15 6 2.3264 -8.4213 -0.5946 16 6 1.7615 -9.3057 0.5295 17 6 2.7895 -10.2685 1.1270 18 7 2.1385 -11.1198 2.1259 19 6 2.8541 -12.0510 2.7872 20 8 4.0372 -12.1838 2.5556 21 6 2.1845 -12.9263 3.8150 22 1 1.1851 -13.2079 3.4835 23 6 2.1239 -12.2103 5.1783 24 7 2.9080 -13.0799 6.0680 25 6 3.3608 -14.1298 5.3703 26 8 4.0401 -15.0098 5.8626 27 7 2.9967 -14.1230 4.0813 28 6 1.5767 -8.0150 1.3450 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6168 -4.9209 -0.8885 32 1 0.6176 -4.9205 0.8914 33 1 2.8340 -5.9124 0.7813 34 1 0.4881 -7.2050 -0.4028 35 1 3.4031 -8.2646 -0.5276 36 1 2.0038 -8.7227 -1.5911 37 1 0.8234 -9.7961 0.2695 38 1 3.2072 -10.8911 0.3358 39 1 3.5888 -9.6985 1.6009 40 1 1.1922 -11.0138 2.3108 41 1 2.5778 -11.2215 5.1117 42 1 1.0936 -12.1364 5.5262 43 1 3.0713 -12.9187 7.0105 44 1 3.2318 -14.7995 3.4272 45 1 0.6475 -7.9877 1.9143 46 1 2.4483 -7.7474 1.9422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100618327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:32 Heat of formation + Delta-G solvation = -99.873290 kcal Electronic energy + Delta-G solvation = -27990.528046 eV Core-core repulsion = 23721.580181 eV Total energy + Delta-G solvation = -4268.947865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.34869 -40.77437 -40.18170 -39.62164 -37.39666 -36.22415 -35.80907 -34.42110 -34.02112 -33.22496 -30.83836 -28.98434 -27.65247 -26.49859 -25.81260 -24.70155 -22.85329 -22.46711 -21.75495 -21.22035 -20.40041 -19.84475 -19.11287 -18.54965 -17.77777 -17.44248 -17.03673 -16.84669 -16.65177 -16.52672 -16.33561 -16.04893 -15.77692 -15.50405 -15.30423 -15.13364 -14.92692 -14.69007 -14.36601 -14.06241 -13.88724 -13.51872 -13.50011 -13.28038 -13.19812 -12.97209 -12.80126 -12.60742 -12.42972 -12.12899 -11.84529 -11.61601 -11.54213 -11.49582 -11.23969 -11.22938 -10.56944 -10.31238 -10.10375 -10.00588 -9.83794 -9.15972 -8.46017 -5.94658 1.38712 1.40210 1.42459 1.52957 1.70085 1.95966 2.07065 2.21300 2.30145 3.00158 3.06517 3.21457 3.31861 3.50467 3.58537 3.67904 3.76046 4.00117 4.00682 4.11319 4.31280 4.35478 4.38368 4.49059 4.55325 4.63607 4.65577 4.71178 4.78790 4.91740 4.94674 5.00119 5.18865 5.27382 5.39361 5.41506 5.54622 5.88800 5.96239 6.18242 6.24799 6.27442 6.47231 6.54811 6.61753 7.13688 7.20296 7.49478 7.57797 8.13651 8.70926 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.001499 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.861280 B =18675.969317 C =19210.946451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.434 3.566 11 O -0.627 6.627 12 C 0.067 3.933 13 N -0.678 5.678 14 C 0.058 3.942 15 C -0.123 4.123 16 C -0.097 4.097 17 C 0.133 3.867 18 N -0.700 5.700 19 C 0.497 3.503 20 O -0.580 6.580 21 C 0.108 3.892 22 H 0.167 0.833 23 C 0.103 3.897 24 N -0.732 5.732 25 C 0.693 3.307 26 O -0.642 6.642 27 N -0.716 5.716 28 C -0.156 4.156 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.343 0.657 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.423 0.577 41 H 0.089 0.911 42 H 0.144 0.856 43 H 0.439 0.561 44 H 0.434 0.566 45 H 0.090 0.910 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 -25.153 7.006 27.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.514 6.514 12 C -0.065 4.065 13 N -0.309 5.309 14 C -0.052 4.052 15 C -0.162 4.162 16 C -0.116 4.116 17 C 0.009 3.991 18 N -0.353 5.353 19 C 0.281 3.719 20 O -0.459 6.459 21 C -0.001 4.001 22 H 0.185 0.815 23 C -0.021 4.021 24 N -0.395 5.395 25 C 0.391 3.609 26 O -0.524 6.524 27 N -0.376 5.376 28 C -0.195 4.195 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.163 0.837 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.262 0.738 41 H 0.107 0.893 42 H 0.162 0.838 43 H 0.282 0.718 44 H 0.276 0.724 45 H 0.108 0.892 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.574 -25.444 6.379 27.303 hybrid contribution -0.045 0.971 0.803 1.261 sum -7.619 -24.473 7.182 26.619 Atomic orbital electron populations 1.69655 1.06715 1.29346 1.50193 1.25996 0.96545 1.02273 0.96242 0.85015 0.77797 0.76814 0.78867 1.19908 1.19381 1.19773 1.19625 0.92683 0.84196 1.50144 0.90516 1.41930 1.09335 1.04680 1.65047 1.21051 0.88297 0.86391 0.82074 1.90492 1.16106 1.88043 1.56748 1.21565 0.94032 0.87853 1.03044 1.60027 1.18710 1.01001 1.51160 1.23237 0.98067 0.86645 0.97203 1.23066 1.00086 0.94464 0.98633 1.22533 0.99534 0.93234 0.96329 1.21268 0.95303 0.91952 0.90560 1.45800 1.14214 1.35369 1.39963 1.21329 0.86914 0.81262 0.82349 1.90783 1.17956 1.70275 1.66900 1.22216 0.97538 0.85199 0.95183 0.81546 1.22610 1.00223 0.94028 0.85288 1.45087 1.56851 1.23981 1.13554 1.16225 0.79325 0.82641 0.82685 1.90961 1.45735 1.42028 1.73647 1.44879 1.57023 1.26021 1.09718 1.23736 1.02890 0.96096 0.96777 0.91275 0.76885 0.87831 0.91247 0.83747 0.86995 0.91290 0.90357 0.85393 0.92169 0.93261 0.73844 0.89323 0.83842 0.71762 0.72361 0.89187 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -28.75 5.29 -306.99 -1.62 -30.38 16 10 C 0.43 20.15 7.82 87.66 0.69 20.84 16 11 O -0.63 -34.56 15.78 -3.05 -0.05 -34.61 16 12 C 0.07 2.12 6.01 85.56 0.51 2.64 16 13 N -0.68 -19.45 6.24 -492.85 -3.08 -22.53 16 14 C 0.06 1.03 4.18 45.44 0.19 1.22 16 15 C -0.12 -1.93 7.44 31.12 0.23 -1.70 16 16 C -0.10 -0.84 3.75 -10.27 -0.04 -0.88 16 17 C 0.13 1.55 5.50 86.38 0.48 2.03 16 18 N -0.70 -4.26 5.56 -463.05 -2.57 -6.84 16 19 C 0.50 5.86 6.93 87.65 0.61 6.46 16 20 O -0.58 -14.14 16.60 -3.03 -0.05 -14.19 16 21 C 0.11 0.54 4.17 44.51 0.19 0.73 16 22 H 0.17 -0.76 8.14 -2.39 -0.02 -0.78 16 23 C 0.10 0.28 7.70 86.65 0.67 0.94 16 24 N -0.73 -7.90 6.37 -477.34 -3.04 -10.94 16 25 C 0.69 13.68 8.92 179.57 1.60 15.28 16 26 O -0.64 -19.60 18.05 -3.98 -0.07 -19.67 16 27 N -0.72 -9.65 5.63 -460.33 -2.59 -12.24 16 28 C -0.16 -1.86 7.25 31.12 0.23 -1.64 16 29 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 30 H 0.40 18.72 7.90 -92.70 -0.73 17.99 16 31 H 0.10 2.92 8.13 -2.39 -0.02 2.90 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.34 10.67 7.90 -89.69 -0.71 9.96 16 34 H 0.11 1.65 7.87 -2.39 -0.02 1.63 16 35 H 0.07 1.39 8.10 -2.38 -0.02 1.37 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.05 0.84 7.88 -2.39 -0.02 0.82 16 40 H 0.42 -0.91 8.47 -92.71 -0.79 -1.69 16 41 H 0.09 0.29 7.72 -2.39 -0.02 0.27 16 42 H 0.14 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.44 3.56 8.96 -92.70 -0.83 2.73 16 44 H 0.43 5.66 8.96 -92.71 -0.83 4.83 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 1.11 7.61 -2.39 -0.02 1.09 16 Total: -1.00 -89.69 390.26 -6.95 -96.64 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -2.81 Total: 30.88 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: 6.63 Total: 27.68 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -12.62 Total: -131.16 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -0.17 Total: -68.47 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -89.69 -6.95 -96.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100618327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.232 kcal (2) G-P(sol) polarization free energy of solvation -89.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds