Wall clock time and date at job start Tue Mar 31 2020 22:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99755 * 2 1 4 4 H 1.48508 * 109.47067 * 240.00205 * 3 2 1 5 5 H 1.48495 * 109.47479 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47193 * 120.00405 * 3 2 1 7 7 C 1.38953 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00070 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99848 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00267 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47631 * 180.02562 * 12 10 9 14 14 C 1.50645 * 111.00035 * 69.87082 * 13 12 10 15 15 H 1.09002 * 116.48269 * 296.29571 * 14 13 12 16 16 C 1.55848 * 101.02923 * 170.24401 * 14 13 12 17 17 C 1.54837 * 103.51374 * 327.00859 * 16 14 13 18 18 C 1.50645 * 111.00429 * 177.96714 * 13 12 10 19 19 H 1.09007 * 116.48282 * 63.70475 * 18 13 12 20 20 C 1.55854 * 101.02677 * 297.65042 * 18 13 12 21 21 H 1.09003 * 110.74545 * 85.58153 * 20 18 13 22 22 N 1.46496 * 110.61129 * 208.49936 * 20 18 13 23 23 C 1.34781 * 120.00215 * 270.06306 * 22 20 18 24 24 O 1.21290 * 119.99552 * 0.02562 * 23 22 20 25 25 C 1.50698 * 120.00535 * 180.02562 * 23 22 20 26 26 N 1.46496 * 109.47244 * 180.02562 * 25 23 22 27 27 C 1.34780 * 119.99612 * 179.97438 * 26 25 23 28 28 N 1.34779 * 119.99720 * 179.97438 * 27 26 25 29 29 O 1.21582 * 120.00281 * 0.02562 * 27 26 25 30 30 C 1.54831 * 103.51779 * 327.00618 * 20 18 13 31 31 H 0.97000 * 120.00343 * 359.97438 * 1 2 3 32 32 H 0.97008 * 120.00052 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47373 * 59.99480 * 12 10 9 34 34 H 1.09002 * 109.47126 * 300.00447 * 12 10 9 35 35 H 1.08999 * 110.61236 * 85.51301 * 16 14 13 36 36 H 1.08995 * 110.61629 * 208.50341 * 16 14 13 37 37 H 1.09005 * 110.61073 * 118.51265 * 17 16 14 38 38 H 1.09003 * 110.60854 * 241.49034 * 17 16 14 39 39 H 0.96994 * 120.00418 * 90.06884 * 22 20 18 40 40 H 1.09003 * 109.46545 * 59.99589 * 25 23 22 41 41 H 1.09005 * 109.46702 * 300.00711 * 25 23 22 42 42 H 0.96999 * 120.00178 * 0.02562 * 26 25 23 43 43 H 0.97001 * 119.99548 * 0.02562 * 28 27 26 44 44 H 0.96996 * 119.99920 * 180.02562 * 28 27 26 45 45 H 1.09004 * 110.61136 * 118.50563 * 30 20 18 46 46 H 1.08998 * 110.61519 * 241.49508 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9795 0.0005 14 6 2.9172 -6.0748 1.3211 15 1 3.5516 -5.2306 1.5912 16 6 3.6477 -7.4426 1.1650 17 6 2.6710 -8.2779 0.3013 18 6 1.4811 -7.3032 0.0510 19 1 0.8461 -7.5448 -0.8014 20 6 0.7517 -7.1948 1.4241 21 1 -0.2020 -6.6784 1.3149 22 7 0.5531 -8.5232 2.0089 23 6 -0.5686 -9.2189 1.7359 24 8 -1.4133 -8.7453 1.0057 25 6 -0.7732 -10.5852 2.3379 26 7 -2.0582 -11.1284 1.8909 27 6 -2.4551 -12.3479 2.3053 28 7 -3.6376 -12.8474 1.8945 29 8 -1.7469 -12.9970 3.0506 30 6 1.7282 -6.3595 2.2877 31 1 -0.4850 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0005 33 1 0.6168 -4.9209 -0.8897 34 1 0.6175 -4.9205 0.8903 35 1 4.5998 -7.3126 0.6505 36 1 3.7967 -7.9113 2.1376 37 1 3.1392 -8.5620 -0.6412 38 1 2.3360 -9.1606 0.8460 39 1 1.2287 -8.9021 2.5926 40 1 -0.7695 -10.5074 3.4251 41 1 0.0317 -11.2472 2.0184 42 1 -2.6230 -10.6107 1.2960 43 1 -4.2027 -12.3293 1.3002 44 1 -3.9234 -13.7249 2.1931 45 1 1.2596 -5.4277 2.6044 46 1 2.0646 -6.9338 3.1509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108920646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:20 Heat of formation + Delta-G solvation = -65.502828 kcal Electronic energy + Delta-G solvation = -29781.730196 eV Core-core repulsion = 25514.272745 eV Total energy + Delta-G solvation = -4267.457450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41179 -40.34598 -39.24121 -37.82684 -34.84479 -34.53509 -33.92801 -33.87400 -31.99782 -31.12944 -30.00209 -29.27629 -27.35777 -26.36994 -24.17297 -22.36334 -21.69303 -21.14172 -20.35243 -19.56798 -19.12592 -18.85835 -17.93159 -17.80845 -16.92731 -16.65396 -16.33511 -15.84112 -15.72142 -15.53249 -15.09740 -14.83939 -14.72012 -14.46733 -14.07617 -13.78935 -13.49057 -13.25394 -12.89449 -12.81891 -12.69561 -12.18803 -11.98951 -11.82583 -11.74536 -11.47151 -11.34093 -11.04753 -10.83932 -10.76005 -10.73455 -10.44525 -10.30072 -10.21084 -10.20244 -10.11971 -9.56076 -9.48800 -9.42598 -8.48759 -8.08363 -7.95303 -6.41217 -3.82124 2.19776 2.25567 2.81392 2.96412 3.19819 3.25643 3.29765 3.87157 3.93938 4.09753 4.19964 4.26338 4.49763 4.58701 4.73392 4.91679 4.92913 5.00474 5.10297 5.14198 5.21150 5.28742 5.36622 5.37434 5.60900 5.63687 5.78597 5.84011 5.90165 5.93255 5.94308 6.11079 6.16549 6.26340 6.26891 6.31251 6.41432 6.50847 6.84232 7.08864 7.18094 7.53588 7.55102 7.79450 8.06138 8.20517 8.62004 9.18280 9.54957 10.06699 10.76428 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002200 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.626973 B =12724.936353 C =13677.097337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.446 3.554 11 O -0.580 6.580 12 C 0.020 3.980 13 N -0.460 5.460 14 C 0.060 3.940 15 H 0.130 0.870 16 C -0.116 4.116 17 C -0.113 4.113 18 C 0.035 3.965 19 H 0.114 0.886 20 C 0.111 3.889 21 H 0.098 0.902 22 N -0.708 5.708 23 C 0.508 3.492 24 O -0.535 6.535 25 C 0.119 3.881 26 N -0.734 5.734 27 C 0.709 3.291 28 N -0.865 5.865 29 O -0.597 6.597 30 C -0.165 4.165 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.403 0.597 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.409 0.591 43 H 0.399 0.601 44 H 0.416 0.584 45 H 0.081 0.919 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 -22.563 5.025 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.231 3.769 11 O -0.464 6.464 12 C -0.111 4.111 13 N -0.182 5.182 14 C -0.049 4.049 15 H 0.148 0.852 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.075 4.075 19 H 0.132 0.868 20 C 0.005 3.995 21 H 0.116 0.884 22 N -0.360 5.360 23 C 0.293 3.707 24 O -0.412 6.412 25 C -0.009 4.009 26 N -0.393 5.393 27 C 0.407 3.593 28 N -0.433 5.433 29 O -0.476 6.476 30 C -0.204 4.204 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.238 0.762 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.247 0.753 43 H 0.227 0.773 44 H 0.248 0.752 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.847 -22.318 4.589 23.107 hybrid contribution -1.299 0.839 0.519 1.631 sum -5.146 -21.479 5.108 22.670 Atomic orbital electron populations 1.69605 1.05919 1.28243 1.50551 1.25262 0.95632 0.99707 0.97380 0.85924 0.78754 0.80519 0.79047 1.19898 1.21010 1.19951 1.19635 0.93297 0.82216 1.47680 0.87988 1.41861 1.09178 1.04575 1.64477 1.19664 0.88341 0.84450 0.84424 1.90504 1.13641 1.87007 1.55228 1.22171 0.95005 0.91952 1.02017 1.67494 1.19910 0.99391 1.31436 1.24506 0.94842 0.98309 0.87201 0.85237 1.22630 0.99020 0.94632 0.99161 1.22546 0.95334 0.96816 1.00409 1.24841 0.94858 0.91986 0.95809 0.86807 1.22886 1.00202 0.82333 0.94073 0.88450 1.45949 1.20849 1.18684 1.50477 1.20516 0.81930 0.86959 0.81274 1.90723 1.43200 1.70105 1.37195 1.20881 0.87120 0.92260 1.00661 1.44697 1.22246 1.18266 1.54139 1.15831 0.81925 0.81140 0.80395 1.42927 1.21054 1.23802 1.55543 1.90981 1.55422 1.60437 1.40747 1.23593 0.97568 1.00248 0.98978 0.91834 0.77514 0.89275 0.92574 0.90812 0.91753 0.91117 0.91575 0.76156 0.88372 0.88304 0.75320 0.77285 0.75184 0.90022 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -14.18 5.29 -10.97 -0.06 -14.24 16 10 C 0.45 10.34 7.58 -10.99 -0.08 10.26 16 11 O -0.58 -15.27 14.46 5.55 0.08 -15.19 16 12 C 0.02 0.36 5.11 -4.98 -0.03 0.34 16 13 N -0.46 -7.35 5.30 -207.01 -1.10 -8.45 16 14 C 0.06 0.85 4.25 -62.56 -0.27 0.58 16 15 H 0.13 2.24 6.98 -51.93 -0.36 1.88 16 16 C -0.12 -1.29 6.44 -24.24 -0.16 -1.44 16 17 C -0.11 -1.17 6.31 -24.25 -0.15 -1.32 16 18 C 0.04 0.44 4.83 -62.56 -0.30 0.13 16 19 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 20 C 0.11 1.23 2.33 -65.44 -0.15 1.08 16 21 H 0.10 1.27 6.81 -51.93 -0.35 0.92 16 22 N -0.71 -5.75 3.71 -51.40 -0.19 -5.94 16 23 C 0.51 4.65 7.90 -10.98 -0.09 4.57 16 24 O -0.54 -6.75 15.33 5.55 0.09 -6.66 16 25 C 0.12 0.88 6.15 -5.20 -0.03 0.85 16 26 N -0.73 -5.83 5.53 -66.41 -0.37 -6.20 16 27 C 0.71 6.47 8.84 -86.91 -0.77 5.71 16 28 N -0.87 -4.37 8.88 27.63 0.25 -4.13 16 29 O -0.60 -7.86 17.18 5.29 0.09 -7.77 16 30 C -0.16 -1.89 5.39 -24.24 -0.13 -2.02 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 0.90 4.87 -51.93 -0.25 0.65 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.54 6.39 -51.93 -0.33 0.21 16 39 H 0.40 2.24 7.91 -40.82 -0.32 1.92 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.41 3.02 7.45 -40.82 -0.30 2.72 16 43 H 0.40 1.00 8.84 -40.82 -0.36 0.64 16 44 H 0.42 1.64 8.93 -40.82 -0.36 1.28 16 45 H 0.08 1.06 7.19 -51.93 -0.37 0.69 16 46 H 0.08 0.70 7.38 -51.93 -0.38 0.32 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -35.67 372.70 -8.48 -44.15 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -6.19 Total: 15.81 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -2.40 Total: 10.81 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.74 Total: -62.74 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: 0.26 Total: -29.63 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.67 -8.48 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108920646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.354 kcal (2) G-P(sol) polarization free energy of solvation -35.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds