Wall clock time and date at job start Tue Mar 31 2020 22:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99755 * 2 1 4 4 H 1.48508 * 109.47067 * 240.00205 * 3 2 1 5 5 H 1.48495 * 109.47479 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47193 * 120.00405 * 3 2 1 7 7 C 1.38953 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99632 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00070 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99848 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00267 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47631 * 180.02562 * 12 10 9 14 14 C 1.50645 * 111.00035 * 69.87082 * 13 12 10 15 15 H 1.09002 * 116.48269 * 296.29571 * 14 13 12 16 16 C 1.55848 * 101.02923 * 170.24401 * 14 13 12 17 17 C 1.54837 * 103.51374 * 327.00859 * 16 14 13 18 18 C 1.50645 * 111.00429 * 177.96714 * 13 12 10 19 19 H 1.09007 * 116.48282 * 63.70475 * 18 13 12 20 20 C 1.55854 * 101.02677 * 297.65042 * 18 13 12 21 21 H 1.09003 * 110.74545 * 85.58153 * 20 18 13 22 22 N 1.46496 * 110.61129 * 208.49936 * 20 18 13 23 23 C 1.34781 * 120.00215 * 270.06306 * 22 20 18 24 24 O 1.21290 * 119.99552 * 0.02562 * 23 22 20 25 25 C 1.50698 * 120.00535 * 180.02562 * 23 22 20 26 26 N 1.46496 * 109.47244 * 180.02562 * 25 23 22 27 27 C 1.34780 * 119.99612 * 179.97438 * 26 25 23 28 28 N 1.34779 * 119.99720 * 179.97438 * 27 26 25 29 29 O 1.21582 * 120.00281 * 0.02562 * 27 26 25 30 30 C 1.54831 * 103.51779 * 327.00618 * 20 18 13 31 31 H 0.97000 * 120.00343 * 359.97438 * 1 2 3 32 32 H 0.97008 * 120.00052 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47373 * 59.99480 * 12 10 9 34 34 H 1.09002 * 109.47126 * 300.00447 * 12 10 9 35 35 H 1.08999 * 110.61236 * 85.51301 * 16 14 13 36 36 H 1.08995 * 110.61629 * 208.50341 * 16 14 13 37 37 H 1.09005 * 110.61073 * 118.51265 * 17 16 14 38 38 H 1.09003 * 110.60854 * 241.49034 * 17 16 14 39 39 H 0.96994 * 120.00418 * 90.06884 * 22 20 18 40 40 H 1.09003 * 109.46545 * 59.99589 * 25 23 22 41 41 H 1.09005 * 109.46702 * 300.00711 * 25 23 22 42 42 H 0.96999 * 120.00178 * 0.02562 * 26 25 23 43 43 H 0.97001 * 119.99548 * 0.02562 * 28 27 26 44 44 H 0.96996 * 119.99920 * 180.02562 * 28 27 26 45 45 H 1.09004 * 110.61136 * 118.50563 * 30 20 18 46 46 H 1.08998 * 110.61519 * 241.49508 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9795 0.0005 14 6 2.9172 -6.0748 1.3211 15 1 3.5516 -5.2306 1.5912 16 6 3.6477 -7.4426 1.1650 17 6 2.6710 -8.2779 0.3013 18 6 1.4811 -7.3032 0.0510 19 1 0.8461 -7.5448 -0.8014 20 6 0.7517 -7.1948 1.4241 21 1 -0.2020 -6.6784 1.3149 22 7 0.5531 -8.5232 2.0089 23 6 -0.5686 -9.2189 1.7359 24 8 -1.4133 -8.7453 1.0057 25 6 -0.7732 -10.5852 2.3379 26 7 -2.0582 -11.1284 1.8909 27 6 -2.4551 -12.3479 2.3053 28 7 -3.6376 -12.8474 1.8945 29 8 -1.7469 -12.9970 3.0506 30 6 1.7282 -6.3595 2.2877 31 1 -0.4850 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0005 33 1 0.6168 -4.9209 -0.8897 34 1 0.6175 -4.9205 0.8903 35 1 4.5998 -7.3126 0.6505 36 1 3.7967 -7.9113 2.1376 37 1 3.1392 -8.5620 -0.6412 38 1 2.3360 -9.1606 0.8460 39 1 1.2287 -8.9021 2.5926 40 1 -0.7695 -10.5074 3.4251 41 1 0.0317 -11.2472 2.0184 42 1 -2.6230 -10.6107 1.2960 43 1 -4.2027 -12.3293 1.3002 44 1 -3.9234 -13.7249 2.1931 45 1 1.2596 -5.4277 2.6044 46 1 2.0646 -6.9338 3.1509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108920646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:20 Heat of formation + Delta-G solvation = -98.402978 kcal Electronic energy + Delta-G solvation = -29783.156853 eV Core-core repulsion = 25514.272745 eV Total energy + Delta-G solvation = -4268.884108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41475 -41.08927 -40.15613 -39.58111 -36.01284 -35.54718 -35.30825 -34.46391 -33.44436 -32.91197 -30.95513 -30.18225 -28.40871 -27.67833 -25.94905 -23.21237 -22.42585 -21.92062 -21.65639 -20.62608 -20.49208 -19.82062 -19.61694 -18.51879 -17.84852 -17.67310 -17.26796 -17.06381 -16.85025 -16.52839 -16.38701 -16.00331 -15.71043 -15.53729 -15.50032 -15.24719 -14.54761 -14.30261 -14.09919 -13.79344 -13.66821 -13.58041 -13.31011 -13.25348 -12.98006 -12.74217 -12.65066 -12.53536 -12.42803 -12.12702 -11.89205 -11.69280 -11.55148 -11.46980 -11.14666 -11.08272 -10.73555 -10.42760 -10.26010 -10.06844 -10.01189 -9.33309 -8.46465 -5.95318 1.39075 1.40727 1.47790 1.51810 1.62090 2.04832 2.14444 2.27048 2.30984 2.76813 3.19775 3.27674 3.50822 3.56705 3.61941 3.71974 3.84102 4.12884 4.14283 4.20632 4.29884 4.38066 4.39906 4.41389 4.42173 4.52519 4.54966 4.74792 4.80729 4.93706 5.01252 5.20413 5.26739 5.28893 5.32449 5.40260 5.43814 5.76444 5.82866 5.85487 6.04436 6.06786 6.43763 6.59888 7.00595 7.12177 7.12457 7.55892 7.61637 8.11452 8.70823 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002200 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.626973 B =12724.936353 C =13677.097337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.036 3.964 13 N -0.488 5.488 14 C 0.046 3.954 15 H 0.090 0.910 16 C -0.107 4.107 17 C -0.104 4.104 18 C 0.035 3.965 19 H 0.110 0.890 20 C 0.125 3.875 21 H 0.078 0.922 22 N -0.693 5.693 23 C 0.514 3.486 24 O -0.571 6.571 25 C 0.123 3.877 26 N -0.732 5.732 27 C 0.705 3.295 28 N -0.848 5.848 29 O -0.640 6.640 30 C -0.153 4.153 31 H 0.277 0.723 32 H 0.394 0.606 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.420 0.580 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.413 0.587 43 H 0.413 0.587 44 H 0.422 0.578 45 H 0.062 0.938 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 -24.294 5.874 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.213 5.213 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.096 4.096 13 N -0.211 5.211 14 C -0.063 4.063 15 H 0.108 0.892 16 C -0.145 4.145 17 C -0.141 4.141 18 C -0.075 4.075 19 H 0.128 0.872 20 C 0.017 3.983 21 H 0.096 0.904 22 N -0.346 5.346 23 C 0.300 3.700 24 O -0.450 6.450 25 C -0.005 4.005 26 N -0.391 5.391 27 C 0.402 3.598 28 N -0.417 5.417 29 O -0.522 6.522 30 C -0.192 4.192 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.259 0.741 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.250 0.750 43 H 0.244 0.756 44 H 0.256 0.744 45 H 0.080 0.920 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.309 -24.073 5.435 25.052 hybrid contribution -1.169 1.337 0.224 1.790 sum -5.478 -22.736 5.659 24.061 Atomic orbital electron populations 1.69675 1.06863 1.29317 1.50418 1.26060 0.96553 1.02464 0.96381 0.84983 0.77734 0.76618 0.78966 1.19791 1.19567 1.19552 1.19616 0.92671 0.83923 1.49860 0.90223 1.41940 1.09222 1.04755 1.65333 1.20635 0.88235 0.85727 0.82154 1.90474 1.15502 1.87835 1.56175 1.21974 0.94782 0.89758 1.03108 1.67490 1.20343 1.00214 1.33086 1.24410 0.95734 0.98824 0.87285 0.89213 1.22615 0.98027 0.92819 1.01048 1.22553 0.93959 0.97026 1.00603 1.24880 0.95691 0.90475 0.96439 0.87220 1.22502 0.98839 0.83509 0.93411 0.90374 1.45726 1.21191 1.17404 1.50286 1.20783 0.81381 0.87317 0.80489 1.90721 1.44435 1.70989 1.38841 1.20937 0.87398 0.91067 1.01138 1.44690 1.22506 1.17962 1.53942 1.16017 0.82480 0.81136 0.80145 1.42791 1.19925 1.24068 1.54907 1.90951 1.56940 1.61554 1.42787 1.23470 0.96218 1.00025 0.99482 0.91342 0.77228 0.88511 0.90925 0.92222 0.88209 0.91490 0.88415 0.74095 0.87223 0.86855 0.74950 0.75644 0.74416 0.91965 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 2 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 3 Si 0.99 43.27 29.55 68.60 2.03 45.29 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.58 -30.01 5.29 -306.99 -1.62 -31.64 16 10 C 0.45 21.49 7.58 87.66 0.66 22.15 16 11 O -0.61 -33.89 14.46 -3.07 -0.04 -33.94 16 12 C 0.04 1.28 5.11 85.56 0.44 1.72 16 13 N -0.49 -15.64 5.30 -808.84 -4.28 -19.92 16 14 C 0.05 1.29 4.25 46.15 0.20 1.49 16 15 H 0.09 3.27 6.98 -2.39 -0.02 3.25 16 16 C -0.11 -2.14 6.44 32.21 0.21 -1.94 16 17 C -0.10 -1.86 6.31 32.20 0.20 -1.65 16 18 C 0.03 0.81 4.83 46.15 0.22 1.03 16 19 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 20 C 0.12 2.52 2.33 46.60 0.11 2.63 16 21 H 0.08 1.96 6.81 -2.39 -0.02 1.94 16 22 N -0.69 -9.04 3.71 -434.92 -1.61 -10.65 16 23 C 0.51 8.08 7.90 87.66 0.69 8.78 16 24 O -0.57 -13.45 15.33 -3.06 -0.05 -13.50 16 25 C 0.12 1.48 6.15 85.63 0.53 2.00 16 26 N -0.73 -10.13 5.53 -482.30 -2.67 -12.80 16 27 C 0.70 11.61 8.84 179.05 1.58 13.20 16 28 N -0.85 -6.99 8.88 -184.75 -1.64 -8.63 16 29 O -0.64 -15.93 17.18 -3.98 -0.07 -16.00 16 30 C -0.15 -3.27 5.39 32.21 0.17 -3.09 16 31 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.39 19.77 7.90 -92.70 -0.73 19.04 16 33 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 34 H 0.07 2.36 4.87 -2.39 -0.01 2.35 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.30 7.82 -2.39 -0.02 1.28 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.10 1.15 6.39 -2.39 -0.02 1.13 16 39 H 0.42 2.76 7.91 -92.71 -0.73 2.03 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.41 5.34 7.45 -92.71 -0.69 4.65 16 43 H 0.41 1.21 8.84 -92.71 -0.82 0.39 16 44 H 0.42 2.59 8.93 -92.71 -0.83 1.76 16 45 H 0.06 1.59 7.19 -2.38 -0.02 1.58 16 46 H 0.11 1.62 7.38 -2.39 -0.02 1.60 16 Total: -1.00 -80.28 372.70 -6.09 -86.37 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -2.70 Total: 37.69 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 6.30 Total: 27.83 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -11.54 Total: -133.75 kcal Atomic # 8 Polarization: -63.27 SS G_CDS: -0.16 Total: -63.43 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -80.28 -6.09 -86.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108920646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.037 kcal (2) G-P(sol) polarization free energy of solvation -80.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds