Wall clock time and date at job start Tue Mar 31 2020 22:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48500 * 109.46880 * 239.99981 * 3 2 1 5 5 H 1.48494 * 109.46998 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47196 * 120.00127 * 3 2 1 7 7 C 1.38816 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99920 * 196.53233 * 7 2 1 9 9 N 1.36943 * 119.99739 * 16.53404 * 7 2 1 10 10 C 1.46963 * 120.59084 * 205.03643 * 9 7 2 11 11 C 1.53371 * 108.63253 * 235.24736 * 10 9 7 12 12 N 1.46961 * 108.63856 * 310.57695 * 11 10 9 13 13 C 1.34774 * 120.59579 * 235.20715 * 12 11 10 14 14 O 1.21552 * 120.00282 * 5.77408 * 13 12 11 15 15 C 1.47850 * 119.99884 * 185.77496 * 13 12 11 16 16 C 1.39579 * 120.14360 * 216.13330 * 15 13 12 17 17 C 1.37957 * 119.85551 * 179.97438 * 16 15 13 18 18 C 1.38352 * 120.14159 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.85468 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.47024 * 89.99735 * 19 18 17 21 21 C 1.36339 * 125.63244 * 269.69641 * 20 19 18 22 22 C 1.34856 * 108.21538 * 179.83461 * 21 20 19 23 23 C 1.40896 * 107.41439 * 0.42421 * 22 21 20 24 24 C 1.34847 * 107.41579 * 359.73502 * 23 22 21 25 25 C 1.38362 * 120.29783 * 0.02562 * 18 17 16 26 26 C 1.37959 * 120.14179 * 359.97438 * 25 18 17 27 27 C 1.46969 * 118.81121 * 55.47592 * 12 11 10 28 28 C 1.46962 * 120.59326 * 25.06170 * 9 7 2 29 29 H 0.97001 * 119.99643 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.60538 * 115.50772 * 10 9 7 31 31 H 1.09000 * 109.75146 * 355.07650 * 10 9 7 32 32 H 1.09000 * 109.60719 * 190.83290 * 11 10 9 33 33 H 1.08996 * 109.75239 * 70.40661 * 11 10 9 34 34 H 1.08005 * 120.07427 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.92750 * 179.71809 * 17 16 15 36 36 H 1.08996 * 109.47465 * 210.00239 * 19 18 17 37 37 H 1.09008 * 109.46934 * 329.99817 * 19 18 17 38 38 H 1.07994 * 125.89640 * 359.95682 * 21 20 19 39 39 H 1.08001 * 126.29474 * 180.16363 * 22 21 20 40 40 H 1.08000 * 126.29094 * 179.74504 * 23 22 21 41 41 H 1.08005 * 125.88673 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.92987 * 179.97438 * 25 18 17 43 43 H 1.07997 * 120.07462 * 180.02562 * 26 25 18 44 44 H 1.09001 * 109.60523 * 64.27119 * 27 12 11 45 45 H 1.08998 * 109.60913 * 184.77662 * 27 12 11 46 46 H 1.09006 * 109.60664 * 244.49795 * 28 9 7 47 47 H 1.08996 * 109.61108 * 4.83217 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0568 -1.2214 0.2667 9 7 1.3680 -2.3637 -0.3365 10 6 1.8574 -3.6590 0.1561 11 6 2.1013 -4.5799 -1.0458 12 7 0.9107 -4.5536 -1.9069 13 6 0.2791 -5.6969 -2.2393 14 8 0.6281 -6.7504 -1.7434 15 6 -0.8383 -5.6697 -3.2071 16 6 -1.9303 -6.5231 -3.0411 17 6 -2.9699 -6.4923 -3.9474 18 6 -2.9314 -5.6185 -5.0194 19 6 -4.0704 -5.5907 -6.0059 20 7 -5.0752 -4.6203 -5.5645 21 6 -6.1394 -4.8907 -4.7563 22 6 -6.8307 -3.7474 -4.5729 23 6 -6.1744 -2.7362 -5.3022 24 6 -5.1039 -3.2989 -5.8988 25 6 -1.8515 -4.7706 -5.1904 26 6 -0.8053 -4.7913 -4.2913 27 6 0.4246 -3.2588 -2.4040 28 6 0.1774 -2.3374 -1.1976 29 1 -0.4850 0.8401 -0.0004 30 1 1.1117 -4.1056 0.8138 31 1 2.7894 -3.5168 0.7031 32 1 2.2782 -5.5974 -0.6971 33 1 2.9671 -4.2303 -1.6081 34 1 -1.9613 -7.2060 -2.2049 35 1 -3.8132 -7.1553 -3.8227 36 1 -3.6940 -5.3031 -6.9875 37 1 -4.5230 -6.5806 -6.0662 38 1 -6.3853 -5.8538 -4.3341 39 1 -7.7255 -3.6295 -3.9797 40 1 -6.4737 -1.7008 -5.3708 41 1 -4.3919 -2.7902 -6.5318 42 1 -1.8275 -4.0911 -6.0295 43 1 0.0369 -4.1288 -4.4256 44 1 1.1732 -2.8144 -3.0599 45 1 -0.5061 -3.4036 -2.9526 46 1 -0.6879 -2.6899 -0.6362 47 1 -0.0012 -1.3194 -1.5438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116111122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:09 Heat of formation + Delta-G solvation = 89.899950 kcal Electronic energy + Delta-G solvation = -29039.192227 eV Core-core repulsion = 25189.322809 eV Total energy + Delta-G solvation = -3849.869417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27478 -40.29698 -38.55804 -36.81094 -34.27501 -33.80309 -31.78026 -31.07436 -30.58468 -29.93792 -28.82353 -27.32418 -26.22864 -23.95673 -23.38991 -22.50249 -22.27465 -20.56649 -20.44157 -20.07386 -19.07463 -17.63026 -17.49736 -16.39157 -16.23917 -15.97434 -15.29980 -14.88711 -14.59561 -14.55104 -14.23470 -13.98727 -13.75126 -13.65855 -13.60448 -13.35657 -13.24179 -13.04741 -12.73109 -12.68614 -12.30780 -12.11507 -12.09711 -11.84184 -11.59511 -11.37377 -11.14824 -10.86281 -10.76308 -10.54294 -10.24498 -10.07128 -9.89869 -9.57709 -9.09679 -8.95447 -8.66911 -8.61910 -8.30311 -8.20640 -6.77966 -5.86498 -3.30475 0.71455 1.21676 2.20817 2.71869 3.03835 3.07512 3.32877 3.33497 3.39721 3.40714 3.76732 4.29309 4.33608 4.42132 4.67529 4.73593 4.80708 4.90342 5.02769 5.14228 5.18083 5.26607 5.32164 5.34202 5.55292 5.59870 5.61100 5.74594 5.79085 5.83744 5.86860 6.05550 6.05589 6.16362 6.20467 6.24945 6.25153 6.29436 6.33324 6.38901 6.67937 6.74686 6.88537 6.94026 7.16677 7.18912 7.28763 7.50006 7.66916 7.82311 8.32160 8.43371 9.09418 9.72159 10.27091 11.20234 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.003263 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.255229 B = 8579.368027 C =10572.400908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.587 5.587 13 C 0.550 3.450 14 O -0.554 6.554 15 C -0.108 4.108 16 C -0.067 4.067 17 C -0.107 4.107 18 C -0.101 4.101 19 C 0.147 3.853 20 N -0.444 5.444 21 C -0.015 4.015 22 C -0.202 4.202 23 C -0.201 4.201 24 C -0.013 4.013 25 C -0.107 4.107 26 C -0.087 4.087 27 C 0.066 3.934 28 C 0.153 3.847 29 H 0.256 0.744 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.159 0.841 42 H 0.128 0.872 43 H 0.139 0.861 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.022 0.978 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -10.694 -14.261 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.029 4.029 12 N -0.318 5.318 13 C 0.338 3.662 14 O -0.434 6.434 15 C -0.112 4.112 16 C -0.086 4.086 17 C -0.126 4.126 18 C -0.102 4.102 19 C 0.026 3.974 20 N -0.120 5.120 21 C -0.144 4.144 22 C -0.226 4.226 23 C -0.226 4.226 24 C -0.142 4.142 25 C -0.126 4.126 26 C -0.106 4.106 27 C -0.058 4.058 28 C 0.027 3.973 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.175 0.825 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.176 0.824 42 H 0.145 0.855 43 H 0.156 0.844 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.040 0.960 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.498 -11.297 -14.078 19.950 hybrid contribution 0.423 1.029 0.147 1.122 sum -8.075 -10.268 -13.931 19.097 Atomic orbital electron populations 1.69961 1.05241 1.25804 1.53935 1.25010 0.95351 0.98436 1.00967 0.86305 0.78847 0.83090 0.78162 1.20991 1.21532 1.20862 1.19223 0.92662 0.84559 1.41846 0.91300 1.44037 1.31605 1.01148 1.54696 1.21279 0.98413 0.87124 0.92740 1.22246 0.86051 1.01296 0.93258 1.47996 1.28849 1.06400 1.48592 1.18340 0.82387 0.83890 0.81601 1.90724 1.66892 1.30550 1.55211 1.20058 0.96128 0.98273 0.96694 1.21180 0.91928 0.96770 0.98694 1.20914 0.98534 0.99030 0.94072 1.20094 0.95571 0.97559 0.96981 1.20707 0.86760 0.93278 0.96644 1.44121 1.20763 1.08268 1.38845 1.21775 0.91355 1.00286 1.01022 1.20900 1.02801 0.92906 1.06039 1.20909 0.98298 0.99463 1.03919 1.21805 1.02279 0.83603 1.06502 1.20934 0.93533 0.98561 0.99523 1.21556 0.99154 0.96524 0.93332 1.23259 0.98934 0.83557 1.00025 1.21416 0.88301 0.99546 0.88081 0.93350 0.95807 0.91436 0.89888 0.91708 0.84910 0.85574 0.88381 0.88434 0.82533 0.84948 0.84869 0.82403 0.85454 0.84371 0.91649 0.89801 0.96018 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 10.90 55.49 0.60 -24.79 16 2 C 0.00 0.01 4.97 -17.43 -0.09 -0.07 16 3 Si 0.91 21.01 29.58 -169.99 -5.03 15.98 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.72 9.62 -15.05 -0.14 -6.86 16 8 H 0.07 1.78 7.87 -52.49 -0.41 1.36 16 9 N -0.59 -14.46 2.98 -171.77 -0.51 -14.98 16 10 C 0.13 2.76 6.67 -3.60 -0.02 2.74 16 11 C 0.10 1.76 6.60 -3.60 -0.02 1.74 16 12 N -0.59 -10.83 2.94 -173.33 -0.51 -11.34 16 13 C 0.55 9.98 7.37 -12.33 -0.09 9.89 16 14 O -0.55 -11.40 16.26 5.32 0.09 -11.31 16 15 C -0.11 -1.62 5.28 -104.97 -0.55 -2.18 16 16 C -0.07 -0.89 9.62 -39.18 -0.38 -1.26 16 17 C -0.11 -1.13 9.68 -39.64 -0.38 -1.51 16 18 C -0.10 -0.98 5.47 -104.53 -0.57 -1.55 16 19 C 0.15 1.08 6.20 -5.19 -0.03 1.05 16 20 N -0.44 -4.34 2.73 -118.41 -0.32 -4.67 16 21 C -0.02 -0.15 11.43 -16.75 -0.19 -0.35 16 22 C -0.20 -2.28 10.86 -39.78 -0.43 -2.71 16 23 C -0.20 -2.31 10.86 -39.78 -0.43 -2.74 16 24 C -0.01 -0.13 11.43 -16.75 -0.19 -0.32 16 25 C -0.11 -1.11 9.68 -39.64 -0.38 -1.50 16 26 C -0.09 -1.11 7.35 -39.19 -0.29 -1.40 16 27 C 0.07 1.20 5.01 -3.37 -0.02 1.18 16 28 C 0.15 3.53 5.57 -3.37 -0.02 3.51 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 32 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.13 1.74 8.02 -52.48 -0.42 1.32 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.10 0.53 8.08 -51.92 -0.42 0.12 16 38 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.14 1.69 6.13 -52.49 -0.32 1.36 16 44 H 0.07 1.15 8.11 -51.93 -0.42 0.72 16 45 H 0.08 1.36 4.37 -51.93 -0.23 1.14 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.11 2.82 5.68 -51.93 -0.29 2.52 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -32.42 382.75 -10.81 -43.23 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.65 Total: 4.45 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.24 Total: -2.35 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.74 Total: -55.77 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.42 -10.81 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116111122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.135 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds