Wall clock time and date at job start Tue Mar 31 2020 22:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48500 * 109.46880 * 239.99981 * 3 2 1 5 5 H 1.48494 * 109.46998 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47196 * 120.00127 * 3 2 1 7 7 C 1.38816 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99920 * 196.53233 * 7 2 1 9 9 N 1.36943 * 119.99739 * 16.53404 * 7 2 1 10 10 C 1.46963 * 120.59084 * 205.03643 * 9 7 2 11 11 C 1.53371 * 108.63253 * 235.24736 * 10 9 7 12 12 N 1.46961 * 108.63856 * 310.57695 * 11 10 9 13 13 C 1.34774 * 120.59579 * 235.20715 * 12 11 10 14 14 O 1.21552 * 120.00282 * 5.77408 * 13 12 11 15 15 C 1.47850 * 119.99884 * 185.77496 * 13 12 11 16 16 C 1.39579 * 120.14360 * 216.13330 * 15 13 12 17 17 C 1.37957 * 119.85551 * 179.97438 * 16 15 13 18 18 C 1.38352 * 120.14159 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.85468 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.47024 * 89.99735 * 19 18 17 21 21 C 1.36339 * 125.63244 * 269.69641 * 20 19 18 22 22 C 1.34856 * 108.21538 * 179.83461 * 21 20 19 23 23 C 1.40896 * 107.41439 * 0.42421 * 22 21 20 24 24 C 1.34847 * 107.41579 * 359.73502 * 23 22 21 25 25 C 1.38362 * 120.29783 * 0.02562 * 18 17 16 26 26 C 1.37959 * 120.14179 * 359.97438 * 25 18 17 27 27 C 1.46969 * 118.81121 * 55.47592 * 12 11 10 28 28 C 1.46962 * 120.59326 * 25.06170 * 9 7 2 29 29 H 0.97001 * 119.99643 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.60538 * 115.50772 * 10 9 7 31 31 H 1.09000 * 109.75146 * 355.07650 * 10 9 7 32 32 H 1.09000 * 109.60719 * 190.83290 * 11 10 9 33 33 H 1.08996 * 109.75239 * 70.40661 * 11 10 9 34 34 H 1.08005 * 120.07427 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.92750 * 179.71809 * 17 16 15 36 36 H 1.08996 * 109.47465 * 210.00239 * 19 18 17 37 37 H 1.09008 * 109.46934 * 329.99817 * 19 18 17 38 38 H 1.07994 * 125.89640 * 359.95682 * 21 20 19 39 39 H 1.08001 * 126.29474 * 180.16363 * 22 21 20 40 40 H 1.08000 * 126.29094 * 179.74504 * 23 22 21 41 41 H 1.08005 * 125.88673 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.92987 * 179.97438 * 25 18 17 43 43 H 1.07997 * 120.07462 * 180.02562 * 26 25 18 44 44 H 1.09001 * 109.60523 * 64.27119 * 27 12 11 45 45 H 1.08998 * 109.60913 * 184.77662 * 27 12 11 46 46 H 1.09006 * 109.60664 * 244.49795 * 28 9 7 47 47 H 1.08996 * 109.61108 * 4.83217 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0568 -1.2214 0.2667 9 7 1.3680 -2.3637 -0.3365 10 6 1.8574 -3.6590 0.1561 11 6 2.1013 -4.5799 -1.0458 12 7 0.9107 -4.5536 -1.9069 13 6 0.2791 -5.6969 -2.2393 14 8 0.6281 -6.7504 -1.7434 15 6 -0.8383 -5.6697 -3.2071 16 6 -1.9303 -6.5231 -3.0411 17 6 -2.9699 -6.4923 -3.9474 18 6 -2.9314 -5.6185 -5.0194 19 6 -4.0704 -5.5907 -6.0059 20 7 -5.0752 -4.6203 -5.5645 21 6 -6.1394 -4.8907 -4.7563 22 6 -6.8307 -3.7474 -4.5729 23 6 -6.1744 -2.7362 -5.3022 24 6 -5.1039 -3.2989 -5.8988 25 6 -1.8515 -4.7706 -5.1904 26 6 -0.8053 -4.7913 -4.2913 27 6 0.4246 -3.2588 -2.4040 28 6 0.1774 -2.3374 -1.1976 29 1 -0.4850 0.8401 -0.0004 30 1 1.1117 -4.1056 0.8138 31 1 2.7894 -3.5168 0.7031 32 1 2.2782 -5.5974 -0.6971 33 1 2.9671 -4.2303 -1.6081 34 1 -1.9613 -7.2060 -2.2049 35 1 -3.8132 -7.1553 -3.8227 36 1 -3.6940 -5.3031 -6.9875 37 1 -4.5230 -6.5806 -6.0662 38 1 -6.3853 -5.8538 -4.3341 39 1 -7.7255 -3.6295 -3.9797 40 1 -6.4737 -1.7008 -5.3708 41 1 -4.3919 -2.7902 -6.5318 42 1 -1.8275 -4.0911 -6.0295 43 1 0.0369 -4.1288 -4.4256 44 1 1.1732 -2.8144 -3.0599 45 1 -0.5061 -3.4036 -2.9526 46 1 -0.6879 -2.6899 -0.6362 47 1 -0.0012 -1.3194 -1.5438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116111122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:08 Heat of formation + Delta-G solvation = 73.487622 kcal Electronic energy + Delta-G solvation = -29039.903918 eV Core-core repulsion = 25189.322809 eV Total energy + Delta-G solvation = -3850.581109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.03767 -41.53038 -39.66512 -38.45756 -35.78302 -34.88153 -33.36364 -32.22695 -31.86175 -31.25140 -29.56854 -28.90679 -27.27060 -25.61415 -24.77181 -23.62204 -23.50665 -21.99849 -21.21457 -20.79336 -20.55326 -19.08869 -18.33251 -17.87608 -17.57158 -16.96516 -16.73247 -16.53755 -15.89557 -15.62396 -15.47050 -15.33460 -15.19522 -14.95453 -14.70582 -14.49661 -14.47559 -14.14308 -14.02150 -13.54873 -13.36296 -13.31079 -13.06395 -12.88608 -12.78199 -12.69215 -12.62379 -12.53125 -12.29769 -12.08712 -12.03347 -11.83653 -11.74068 -10.99922 -10.61368 -10.06398 -9.92943 -9.84506 -9.44524 -8.97034 -8.72511 -7.88534 -5.36718 -0.25094 0.33150 1.43436 1.49761 1.50958 1.58321 1.60113 1.92683 2.22471 2.24266 2.50721 2.81063 3.25213 3.36524 3.55376 3.67265 3.69806 3.90386 4.03810 4.17265 4.18129 4.27559 4.30043 4.33923 4.44975 4.48483 4.50354 4.53585 4.57876 4.71068 4.73514 4.76591 4.79158 4.84659 4.96800 5.00407 5.17288 5.20633 5.29573 5.37108 5.47039 5.49417 5.52530 5.57817 5.63592 5.82293 6.15639 6.32289 6.36190 6.39860 6.60294 7.00505 7.08150 7.76081 8.28187 9.15781 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.003263 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.255229 B = 8579.368027 C =10572.400908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.131 3.869 11 C 0.104 3.896 12 N -0.594 5.594 13 C 0.548 3.452 14 O -0.585 6.585 15 C -0.138 4.138 16 C -0.082 4.082 17 C -0.102 4.102 18 C -0.091 4.091 19 C 0.146 3.854 20 N -0.444 5.444 21 C -0.018 4.018 22 C -0.231 4.231 23 C -0.232 4.232 24 C -0.017 4.017 25 C -0.103 4.103 26 C -0.095 4.095 27 C 0.086 3.914 28 C 0.159 3.841 29 H 0.252 0.748 30 H 0.005 0.995 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.155 0.845 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.181 0.819 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.181 0.819 42 H 0.158 0.842 43 H 0.141 0.859 44 H 0.078 0.922 45 H 0.106 0.894 46 H -0.011 1.011 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 -11.228 -16.812 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.332 5.332 10 C 0.005 3.995 11 C -0.019 4.019 12 N -0.324 5.324 13 C 0.339 3.661 14 O -0.467 6.467 15 C -0.141 4.141 16 C -0.101 4.101 17 C -0.120 4.120 18 C -0.092 4.092 19 C 0.026 3.974 20 N -0.119 5.119 21 C -0.148 4.148 22 C -0.256 4.256 23 C -0.256 4.256 24 C -0.147 4.147 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.037 4.037 28 C 0.033 3.967 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.172 0.828 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.198 0.802 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.198 0.802 42 H 0.175 0.825 43 H 0.159 0.841 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.007 0.993 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.517 -11.857 -16.642 22.138 hybrid contribution 0.355 1.130 0.963 1.527 sum -8.162 -10.727 -15.678 20.676 Atomic orbital electron populations 1.70135 1.06672 1.26125 1.55281 1.25756 0.96040 1.01435 1.01109 0.85277 0.77466 0.78915 0.78372 1.19977 1.22071 1.20480 1.19574 0.93068 0.85501 1.41357 0.90857 1.44300 1.31737 1.01777 1.55388 1.21355 0.98113 0.86250 0.93786 1.22088 0.86749 1.00710 0.92402 1.48049 1.28952 1.06670 1.48769 1.18896 0.82606 0.83078 0.81547 1.90690 1.67887 1.31488 1.56660 1.19937 0.95964 1.00808 0.97374 1.21261 0.92626 0.96737 0.99514 1.21229 0.98236 0.99286 0.93282 1.20428 0.95932 0.96130 0.96686 1.20978 0.85463 0.94210 0.96737 1.44275 1.20858 1.08384 1.38406 1.22177 0.91190 1.00852 1.00587 1.21171 1.03664 0.93782 1.06963 1.21173 0.99474 0.99929 1.05072 1.22184 1.02179 0.84075 1.06245 1.21303 0.92635 0.98618 0.99534 1.21621 1.00179 0.96273 0.93284 1.23020 1.00524 0.82425 0.97736 1.21225 0.86978 0.99251 0.89272 0.93854 0.97661 0.90425 0.89458 0.90341 0.85843 0.82766 0.85736 0.85840 0.80212 0.84737 0.84854 0.80208 0.82469 0.84139 0.90372 0.87584 0.99326 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.77 10.90 21.65 0.24 -53.53 16 2 C -0.05 -2.60 4.97 84.86 0.42 -2.18 16 3 Si 0.97 43.31 29.58 68.60 2.03 45.34 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.27 -14.15 9.62 84.03 0.81 -13.34 16 8 H 0.07 3.76 7.87 -2.91 -0.02 3.74 16 9 N -0.61 -30.24 2.98 -697.36 -2.08 -32.32 16 10 C 0.13 5.61 6.67 86.42 0.58 6.19 16 11 C 0.10 3.84 6.60 86.42 0.57 4.41 16 12 N -0.59 -21.86 2.94 -820.57 -2.41 -24.27 16 13 C 0.55 19.99 7.37 86.79 0.64 20.63 16 14 O -0.58 -24.46 16.26 -3.88 -0.06 -24.53 16 15 C -0.14 -4.02 5.28 -20.09 -0.11 -4.13 16 16 C -0.08 -2.11 9.62 22.53 0.22 -1.89 16 17 C -0.10 -1.85 9.68 22.23 0.22 -1.63 16 18 C -0.09 -1.41 5.47 -19.81 -0.11 -1.52 16 19 C 0.15 1.44 6.20 85.63 0.53 1.97 16 20 N -0.44 -7.12 2.73 -528.54 -1.44 -8.56 16 21 C -0.02 -0.33 11.43 83.22 0.95 0.62 16 22 C -0.23 -5.02 10.86 22.14 0.24 -4.78 16 23 C -0.23 -5.11 10.86 22.14 0.24 -4.87 16 24 C -0.02 -0.31 11.43 83.21 0.95 0.64 16 25 C -0.10 -1.77 9.68 22.23 0.22 -1.55 16 26 C -0.10 -2.22 7.35 22.53 0.17 -2.06 16 27 C 0.09 3.10 5.01 86.56 0.43 3.54 16 28 C 0.16 7.53 5.57 86.56 0.48 8.02 16 29 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.08 3.09 7.93 -2.39 -0.02 3.07 16 32 H 0.09 3.15 6.99 -2.39 -0.02 3.13 16 33 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.12 3.28 8.02 -2.91 -0.02 3.25 16 35 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.12 0.66 8.08 -2.39 -0.02 0.64 16 37 H 0.12 0.66 8.08 -2.38 -0.02 0.64 16 38 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.14 3.14 6.13 -2.91 -0.02 3.12 16 44 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 45 H 0.11 3.36 4.37 -2.39 -0.01 3.35 16 46 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 47 H 0.09 4.58 5.68 -2.39 -0.01 4.57 16 Total: -1.00 -72.37 382.75 4.68 -67.69 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.97 Total: 22.13 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 7.45 Total: 8.06 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -5.70 Total: -118.69 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.37 4.68 -67.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116111122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.176 kcal (2) G-P(sol) polarization free energy of solvation -72.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds