Wall clock time and date at job start Tue Mar 31 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99586 * 2 1 4 4 H 1.48500 * 109.47347 * 269.99961 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00279 * 3 2 1 6 6 H 1.48504 * 109.46884 * 149.99847 * 3 2 1 7 7 C 1.38811 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99741 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99788 * 173.40272 * 9 7 2 11 11 C 1.53000 * 109.47372 * 301.12046 * 10 9 7 12 12 N 1.46497 * 109.47007 * 305.24609 * 11 10 9 13 13 C 1.34778 * 120.00010 * 175.77057 * 12 11 10 14 14 O 1.21282 * 120.00198 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00031 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47244 * 179.97438 * 15 13 12 17 17 C 1.36366 * 125.96815 * 269.69542 * 16 15 13 18 18 O 1.35633 * 125.98752 * 0.02915 * 17 16 15 19 19 N 1.30909 * 108.02463 * 179.88561 * 17 16 15 20 20 N 1.40120 * 107.93723 * 0.36886 * 19 17 16 21 21 C 1.30905 * 107.94132 * 359.76646 * 20 19 17 22 22 O 1.35620 * 125.98700 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46971 * 61.11988 * 10 9 7 24 24 C 1.52995 * 109.47080 * 60.00170 * 23 10 9 25 25 C 1.52999 * 109.47534 * 59.99794 * 24 23 10 26 26 C 1.53002 * 109.46948 * 299.99830 * 25 24 23 27 27 C 1.52999 * 109.46962 * 181.11777 * 10 9 7 28 28 H 0.97004 * 120.00143 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99834 * 353.40934 * 9 7 2 30 30 H 1.09002 * 109.47343 * 185.24898 * 11 10 9 31 31 H 1.08997 * 109.47155 * 65.25073 * 11 10 9 32 32 H 0.97003 * 120.00546 * 355.77831 * 12 11 10 33 33 H 1.09005 * 109.47174 * 60.00315 * 15 13 12 34 34 H 1.08997 * 109.47456 * 300.00240 * 15 13 12 35 35 H 0.96705 * 113.99141 * 90.00881 * 18 17 16 36 36 H 0.96697 * 113.99893 * 270.01957 * 22 21 20 37 37 H 1.09004 * 109.46972 * 179.97438 * 23 10 9 38 38 H 1.08991 * 109.47170 * 299.99584 * 23 10 9 39 39 H 1.09004 * 109.47015 * 299.99725 * 24 23 10 40 40 H 1.09005 * 109.47549 * 180.02562 * 24 23 10 41 41 H 1.08999 * 109.47364 * 180.02562 * 25 24 23 42 42 H 1.08995 * 109.46968 * 60.00145 * 25 24 23 43 43 H 1.08995 * 109.47543 * 299.99963 * 26 25 24 44 44 H 1.08995 * 109.46964 * 179.97438 * 26 25 24 45 45 H 1.09005 * 109.46880 * 60.00730 * 27 10 9 46 46 H 1.09004 * 109.47025 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4623 0.1441 11 6 3.7222 -3.1298 1.4644 12 7 3.9395 -2.1920 2.5687 13 6 3.5832 -2.5334 3.8228 14 8 3.0830 -3.6173 4.0373 15 6 3.8063 -1.5684 4.9587 16 7 3.3383 -2.1702 6.2098 17 6 2.0815 -2.0645 6.7284 18 8 1.0460 -1.3846 6.1761 19 7 2.0488 -2.7369 7.8511 20 7 3.3215 -3.2830 8.0644 21 6 4.0853 -2.9290 7.0619 22 8 5.3907 -3.2587 6.8995 23 6 3.7635 -3.3919 -1.0200 24 6 4.1536 -2.7245 -2.3402 25 6 5.6576 -2.4436 -2.3449 26 6 6.0063 -1.5139 -1.1808 27 6 5.6162 -2.1814 0.1395 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3675 -0.0975 30 1 4.3343 -4.0187 1.6169 31 1 2.6705 -3.4143 1.4309 32 1 4.3398 -1.3252 2.3972 33 1 3.2522 -0.6492 4.7686 34 1 4.8693 -1.3418 5.0395 35 1 0.5031 -1.9143 5.5762 36 1 6.0079 -2.6260 7.2917 37 1 4.3089 -4.3295 -0.9122 38 1 2.6921 -3.5921 -1.0166 39 1 3.6085 -1.7867 -2.4482 40 1 3.9047 -3.3865 -3.1696 41 1 5.9354 -1.9676 -3.2853 42 1 6.2026 -3.3813 -2.2369 43 1 5.4613 -0.5762 -1.2888 44 1 7.0778 -1.3141 -1.1839 45 1 5.8647 -1.5191 0.9689 46 1 6.1613 -3.1192 0.2470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120068110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:37 Heat of formation + Delta-G solvation = -12.638039 kcal Electronic energy + Delta-G solvation = -31075.970155 eV Core-core repulsion = 26810.805094 eV Total energy + Delta-G solvation = -4265.165061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.34974 -39.82099 -38.68610 -38.24964 -37.13434 -34.81097 -34.29722 -33.49484 -31.52949 -30.50106 -29.62436 -29.55928 -28.20694 -25.22367 -23.60616 -22.83514 -22.46751 -22.10245 -20.91998 -20.38802 -18.97266 -18.86741 -18.38988 -17.91137 -17.52711 -16.90646 -16.28468 -15.57469 -15.43266 -15.22128 -15.09465 -14.53315 -14.47396 -13.98584 -13.75994 -13.63276 -13.29248 -13.04833 -12.93991 -12.75688 -12.46301 -12.32963 -12.16445 -12.14473 -11.82451 -11.47123 -11.36993 -11.12073 -10.97808 -10.77469 -10.64928 -10.61653 -10.50356 -10.14576 -10.04259 -9.80087 -9.62275 -9.49400 -9.46990 -9.06137 -8.75462 -7.45967 -5.91244 -3.29308 1.39656 1.66034 2.17143 2.59957 3.15804 3.16476 3.22653 3.23604 3.31808 3.74139 4.31162 4.41886 4.67961 4.76961 4.87811 4.98349 4.99647 5.13290 5.15865 5.18119 5.39853 5.47722 5.55073 5.59958 5.70970 5.77020 5.85761 5.92022 5.95788 5.98990 6.03940 6.19135 6.30126 6.34055 6.44235 6.53136 6.57858 6.71815 6.82172 6.92640 6.93086 7.23292 7.63335 7.82169 7.83856 8.25638 8.28818 9.03562 9.75063 9.94136 11.26512 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003880 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.329258 B = 7214.338747 C = 8590.018338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.011 3.989 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.736 5.736 10 C 0.198 3.802 11 C 0.119 3.881 12 N -0.691 5.691 13 C 0.496 3.504 14 O -0.537 6.537 15 C 0.080 3.920 16 N -0.494 5.494 17 C 0.422 3.578 18 O -0.437 6.437 19 N -0.298 5.298 20 N -0.299 5.299 21 C 0.413 3.587 22 O -0.433 6.433 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.118 4.118 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.400 0.600 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.420 0.580 36 H 0.408 0.592 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.505 -1.210 4.273 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.186 4.186 3 Si 0.707 3.293 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.108 0.892 9 N -0.379 5.379 10 C 0.106 3.894 11 C -0.006 4.006 12 N -0.341 5.341 13 C 0.279 3.721 14 O -0.414 6.414 15 C -0.048 4.048 16 N -0.214 5.214 17 C 0.112 3.888 18 O -0.239 6.239 19 N -0.143 5.143 20 N -0.143 5.143 21 C 0.103 3.897 22 O -0.233 6.233 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.156 4.156 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.235 0.765 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.280 0.720 36 H 0.265 0.735 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.367 -2.701 5.778 14.810 hybrid contribution 1.173 2.447 -1.746 3.227 sum 14.540 -0.253 4.032 15.091 Atomic orbital electron populations 1.69684 1.05094 1.25791 1.56997 1.24652 0.95051 0.96855 1.02008 0.86708 0.79029 0.85648 0.77868 1.21184 1.21917 1.20503 1.18906 0.80334 0.94471 1.43139 0.89181 1.42806 1.04004 1.02399 1.88695 1.19786 0.90042 0.87986 0.91574 1.21880 1.02087 0.90629 0.86041 1.45606 1.61891 1.20449 1.06165 1.20371 0.79561 0.87930 0.84267 1.90760 1.43686 1.23056 1.83913 1.21763 1.03781 0.97473 0.81768 1.46585 1.11716 1.42737 1.20316 1.21340 0.81524 0.94750 0.91200 1.84888 1.37278 1.37252 1.64440 1.78357 1.10519 1.11799 1.13590 1.78297 0.97130 1.21028 1.17875 1.21196 0.86912 0.92899 0.88668 1.85008 1.09076 1.49533 1.79650 1.21803 1.01808 0.96973 0.95048 1.21376 0.94972 1.01872 0.96548 1.21503 0.97252 0.98883 0.97613 1.21478 0.99732 0.99374 0.94772 1.21763 0.95914 1.00584 0.97356 0.93005 0.80527 0.92742 0.90668 0.76457 0.85100 0.86021 0.72026 0.73475 0.93336 0.91215 0.90329 0.93262 0.92827 0.92788 0.91666 0.92856 0.92509 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.73 13.97 55.49 0.78 -25.95 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 19.48 27.67 -169.99 -4.70 14.77 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -5.52 6.62 56.52 0.37 -5.15 16 7 C -0.24 -5.64 9.20 -15.06 -0.14 -5.78 16 8 H 0.09 2.40 6.99 -52.49 -0.37 2.03 16 9 N -0.74 -13.61 3.36 -47.23 -0.16 -13.77 16 10 C 0.20 2.98 0.40 -131.82 -0.05 2.93 16 11 C 0.12 1.88 4.30 -4.04 -0.02 1.86 16 12 N -0.69 -9.73 5.14 -60.29 -0.31 -10.04 16 13 C 0.50 7.26 7.90 -10.98 -0.09 7.17 16 14 O -0.54 -10.18 16.43 5.56 0.09 -10.09 16 15 C 0.08 0.85 6.49 -5.19 -0.03 0.82 16 16 N -0.49 -6.46 2.25 -121.35 -0.27 -6.74 16 17 C 0.42 6.21 9.15 -88.81 -0.81 5.40 16 18 O -0.44 -5.66 13.57 -18.60 -0.25 -5.92 16 19 N -0.30 -5.00 12.72 29.65 0.38 -4.62 16 20 N -0.30 -4.84 12.72 29.65 0.38 -4.46 16 21 C 0.41 5.56 9.15 -88.80 -0.81 4.74 16 22 O -0.43 -4.27 13.58 -18.56 -0.25 -4.52 16 23 C -0.12 -1.77 4.58 -26.73 -0.12 -1.89 16 24 C -0.11 -1.60 5.76 -26.73 -0.15 -1.75 16 25 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 26 C -0.12 -1.40 5.75 -26.73 -0.15 -1.55 16 27 C -0.12 -1.43 4.66 -26.73 -0.12 -1.56 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.36 6.67 4.43 -40.82 -0.18 6.48 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.45 7.54 -51.93 -0.39 1.06 16 32 H 0.40 5.02 7.27 -40.82 -0.30 4.73 16 33 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.42 4.18 9.06 45.56 0.41 4.59 16 36 H 0.41 1.39 9.06 45.56 0.41 1.80 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.23 7.21 -51.93 -0.37 0.86 16 39 H 0.08 1.37 7.60 -51.93 -0.39 0.97 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.89 6.84 -51.93 -0.36 0.53 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.63 7.11 -51.93 -0.37 0.26 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -34.91 375.72 -6.30 -41.21 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -4.87 Total: 15.45 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -2.76 Total: 9.02 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: 0.79 Total: -65.58 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.41 Total: -20.53 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.70 Total: 14.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.91 -6.30 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120068110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.570 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds