Wall clock time and date at job start Tue Mar 31 2020 22:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99586 * 2 1 4 4 H 1.48500 * 109.47347 * 269.99961 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00279 * 3 2 1 6 6 H 1.48504 * 109.46884 * 149.99847 * 3 2 1 7 7 C 1.38811 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99741 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99788 * 173.40272 * 9 7 2 11 11 C 1.53000 * 109.47372 * 301.12046 * 10 9 7 12 12 N 1.46497 * 109.47007 * 305.24609 * 11 10 9 13 13 C 1.34778 * 120.00010 * 175.77057 * 12 11 10 14 14 O 1.21282 * 120.00198 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00031 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47244 * 179.97438 * 15 13 12 17 17 C 1.36366 * 125.96815 * 269.69542 * 16 15 13 18 18 O 1.35633 * 125.98752 * 0.02915 * 17 16 15 19 19 N 1.30909 * 108.02463 * 179.88561 * 17 16 15 20 20 N 1.40120 * 107.93723 * 0.36886 * 19 17 16 21 21 C 1.30905 * 107.94132 * 359.76646 * 20 19 17 22 22 O 1.35620 * 125.98700 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46971 * 61.11988 * 10 9 7 24 24 C 1.52995 * 109.47080 * 60.00170 * 23 10 9 25 25 C 1.52999 * 109.47534 * 59.99794 * 24 23 10 26 26 C 1.53002 * 109.46948 * 299.99830 * 25 24 23 27 27 C 1.52999 * 109.46962 * 181.11777 * 10 9 7 28 28 H 0.97004 * 120.00143 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99834 * 353.40934 * 9 7 2 30 30 H 1.09002 * 109.47343 * 185.24898 * 11 10 9 31 31 H 1.08997 * 109.47155 * 65.25073 * 11 10 9 32 32 H 0.97003 * 120.00546 * 355.77831 * 12 11 10 33 33 H 1.09005 * 109.47174 * 60.00315 * 15 13 12 34 34 H 1.08997 * 109.47456 * 300.00240 * 15 13 12 35 35 H 0.96705 * 113.99141 * 90.00881 * 18 17 16 36 36 H 0.96697 * 113.99893 * 270.01957 * 22 21 20 37 37 H 1.09004 * 109.46972 * 179.97438 * 23 10 9 38 38 H 1.08991 * 109.47170 * 299.99584 * 23 10 9 39 39 H 1.09004 * 109.47015 * 299.99725 * 24 23 10 40 40 H 1.09005 * 109.47549 * 180.02562 * 24 23 10 41 41 H 1.08999 * 109.47364 * 180.02562 * 25 24 23 42 42 H 1.08995 * 109.46968 * 60.00145 * 25 24 23 43 43 H 1.08995 * 109.47543 * 299.99963 * 26 25 24 44 44 H 1.08995 * 109.46964 * 179.97438 * 26 25 24 45 45 H 1.09005 * 109.46880 * 60.00730 * 27 10 9 46 46 H 1.09004 * 109.47025 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4623 0.1441 11 6 3.7222 -3.1298 1.4644 12 7 3.9395 -2.1920 2.5687 13 6 3.5832 -2.5334 3.8228 14 8 3.0830 -3.6173 4.0373 15 6 3.8063 -1.5684 4.9587 16 7 3.3383 -2.1702 6.2098 17 6 2.0815 -2.0645 6.7284 18 8 1.0460 -1.3846 6.1761 19 7 2.0488 -2.7369 7.8511 20 7 3.3215 -3.2830 8.0644 21 6 4.0853 -2.9290 7.0619 22 8 5.3907 -3.2587 6.8995 23 6 3.7635 -3.3919 -1.0200 24 6 4.1536 -2.7245 -2.3402 25 6 5.6576 -2.4436 -2.3449 26 6 6.0063 -1.5139 -1.1808 27 6 5.6162 -2.1814 0.1395 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3675 -0.0975 30 1 4.3343 -4.0187 1.6169 31 1 2.6705 -3.4143 1.4309 32 1 4.3398 -1.3252 2.3972 33 1 3.2522 -0.6492 4.7686 34 1 4.8693 -1.3418 5.0395 35 1 0.5031 -1.9143 5.5762 36 1 6.0079 -2.6260 7.2917 37 1 4.3089 -4.3295 -0.9122 38 1 2.6921 -3.5921 -1.0166 39 1 3.6085 -1.7867 -2.4482 40 1 3.9047 -3.3865 -3.1696 41 1 5.9354 -1.9676 -3.2853 42 1 6.2026 -3.3813 -2.2369 43 1 5.4613 -0.5762 -1.2888 44 1 7.0778 -1.3141 -1.1839 45 1 5.8647 -1.5191 0.9689 46 1 6.1613 -3.1192 0.2470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120068110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:36 Heat of formation + Delta-G solvation = -45.868363 kcal Electronic energy + Delta-G solvation = -31077.411130 eV Core-core repulsion = 26810.805094 eV Total energy + Delta-G solvation = -4266.606036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.39026 -41.05030 -39.90329 -39.16699 -38.07285 -36.02120 -35.36954 -35.12547 -33.12091 -31.59965 -31.04685 -30.70693 -29.26159 -26.37880 -25.38480 -23.87748 -23.58468 -23.13494 -22.00756 -21.59729 -19.97472 -19.85889 -19.72065 -19.61227 -18.62175 -17.95210 -17.32785 -16.75004 -16.59093 -16.39119 -16.23698 -16.15601 -15.65806 -15.14583 -14.95239 -14.88423 -14.42776 -14.35312 -14.07594 -13.93685 -13.78779 -13.40268 -13.34353 -13.30602 -12.94128 -12.84400 -12.65221 -12.57053 -12.35606 -12.07468 -11.92930 -11.81126 -11.67347 -11.63224 -11.25627 -11.19507 -10.90950 -10.74183 -10.67250 -10.55974 -10.02964 -9.23557 -7.91468 -5.25558 0.36211 0.73056 1.09984 1.39141 1.45559 1.47158 1.53885 2.12433 2.21820 2.55549 2.82362 3.39276 3.45821 3.53313 3.64519 3.86452 3.95038 4.02192 4.06386 4.12477 4.24009 4.35878 4.43886 4.61463 4.63725 4.71902 4.72046 4.77687 4.87059 4.94255 5.04949 5.16820 5.19292 5.22959 5.38652 5.42473 5.48482 5.50590 5.61280 5.72471 5.91186 6.14680 6.30901 6.39899 6.51911 6.75323 7.15817 7.18871 7.91446 8.12893 9.30235 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003880 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.329258 B = 7214.338747 C = 8590.018338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.063 4.063 3 Si 0.942 3.058 4 H -0.292 1.292 5 H -0.311 1.311 6 H -0.230 1.230 7 C -0.198 4.198 8 H 0.047 0.953 9 N -0.729 5.729 10 C 0.196 3.804 11 C 0.127 3.873 12 N -0.684 5.684 13 C 0.493 3.507 14 O -0.586 6.586 15 C 0.085 3.915 16 N -0.492 5.492 17 C 0.419 3.581 18 O -0.439 6.439 19 N -0.334 5.334 20 N -0.338 5.338 21 C 0.430 3.570 22 O -0.430 6.430 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.110 4.110 26 C -0.116 4.116 27 C -0.112 4.112 28 H 0.251 0.749 29 H 0.368 0.632 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.412 0.588 33 H 0.147 0.853 34 H 0.174 0.826 35 H 0.430 0.570 36 H 0.437 0.563 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.377 -0.143 4.250 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.641 5.641 2 C -0.253 4.253 3 Si 0.771 3.229 4 H -0.219 1.219 5 H -0.239 1.239 6 H -0.153 1.153 7 C -0.329 4.329 8 H 0.065 0.935 9 N -0.372 5.372 10 C 0.106 3.894 11 C 0.001 3.999 12 N -0.334 5.334 13 C 0.278 3.722 14 O -0.467 6.467 15 C -0.042 4.042 16 N -0.212 5.212 17 C 0.108 3.892 18 O -0.242 6.242 19 N -0.179 5.179 20 N -0.182 5.182 21 C 0.119 3.881 22 O -0.234 6.234 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.148 4.148 26 C -0.153 4.153 27 C -0.149 4.149 28 H 0.060 0.940 29 H 0.203 0.797 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.249 0.751 33 H 0.165 0.835 34 H 0.191 0.809 35 H 0.292 0.708 36 H 0.300 0.700 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.355 -1.629 5.755 19.305 hybrid contribution -0.318 1.935 -1.837 2.687 sum 18.037 0.306 3.918 18.460 Atomic orbital electron populations 1.69901 1.07488 1.26081 1.60594 1.25384 0.95683 1.00781 1.03482 0.85614 0.79481 0.80197 0.77624 1.21880 1.23854 1.15324 1.18674 0.82543 0.92386 1.39285 0.93542 1.42686 1.02004 1.04217 1.88334 1.19999 0.92403 0.86182 0.90849 1.21659 0.99415 0.91793 0.87029 1.45523 1.61604 1.20582 1.05720 1.21077 0.78198 0.87863 0.85083 1.90751 1.45757 1.25516 1.84676 1.22027 1.07113 0.96052 0.78962 1.46627 1.11049 1.42677 1.20825 1.21406 0.82360 0.94339 0.91127 1.84861 1.37267 1.37398 1.64691 1.78239 1.11462 1.13064 1.15089 1.78195 0.97421 1.22745 1.19888 1.21257 0.87936 0.91224 0.87685 1.84986 1.07755 1.50791 1.79908 1.21792 0.99607 0.98408 0.95849 1.21334 0.97117 1.00047 0.96142 1.21482 0.94689 1.00119 0.98480 1.21503 1.01359 0.98307 0.94178 1.21756 0.92447 1.02310 0.98434 0.93982 0.79740 0.91376 0.95487 0.75060 0.83484 0.80881 0.70843 0.69965 0.90866 0.95323 0.93818 0.92834 0.91901 0.90823 0.93353 0.89844 0.90509 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -59.81 13.97 21.65 0.30 -59.51 16 2 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 3 Si 0.94 39.85 27.67 68.60 1.90 41.75 16 4 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.31 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.23 -7.76 6.62 99.48 0.66 -7.10 16 7 C -0.20 -9.60 9.20 84.03 0.77 -8.83 16 8 H 0.05 2.66 6.99 -2.91 -0.02 2.64 16 9 N -0.73 -26.07 3.36 -303.35 -1.02 -27.09 16 10 C 0.20 5.56 0.40 3.61 0.00 5.56 16 11 C 0.13 3.89 4.30 86.38 0.37 4.26 16 12 N -0.68 -17.58 5.14 -463.06 -2.38 -19.96 16 13 C 0.49 13.45 7.90 87.66 0.69 14.14 16 14 O -0.59 -22.07 16.43 -3.04 -0.05 -22.12 16 15 C 0.08 1.51 6.49 85.63 0.56 2.06 16 16 N -0.49 -11.91 2.25 -759.26 -1.71 -13.61 16 17 C 0.42 12.15 9.15 179.72 1.65 13.79 16 18 O -0.44 -11.31 13.57 -89.46 -1.21 -12.52 16 19 N -0.33 -11.31 12.72 -173.65 -2.21 -13.52 16 20 N -0.34 -10.81 12.72 -173.66 -2.21 -13.02 16 21 C 0.43 10.72 9.15 179.71 1.65 12.37 16 22 O -0.43 -7.04 13.58 -89.32 -1.21 -8.25 16 23 C -0.12 -3.49 4.58 30.59 0.14 -3.35 16 24 C -0.11 -3.04 5.76 30.59 0.18 -2.86 16 25 C -0.11 -2.26 5.92 30.59 0.18 -2.08 16 26 C -0.12 -2.23 5.75 30.60 0.18 -2.05 16 27 C -0.11 -2.17 4.66 30.59 0.14 -2.03 16 28 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.37 12.46 4.43 -92.71 -0.41 12.05 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.03 1.09 7.54 -2.39 -0.02 1.07 16 32 H 0.41 8.62 7.27 -92.71 -0.67 7.95 16 33 H 0.15 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.17 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.43 8.82 9.06 -74.05 -0.67 8.15 16 36 H 0.44 1.12 9.06 -74.06 -0.67 0.45 16 37 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.03 1.07 7.21 -2.39 -0.02 1.05 16 39 H 0.04 1.51 7.60 -2.38 -0.02 1.50 16 40 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.11 6.84 -2.39 -0.02 1.10 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.24 7.11 -2.38 -0.02 1.22 16 46 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -83.02 375.72 -4.24 -87.25 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -1.41 Total: 32.46 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 6.97 Total: 28.15 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -9.22 Total: -146.71 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.48 Total: -42.90 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.90 Total: 41.75 kcal Total: -83.02 -4.24 -87.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120068110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.386 kcal (2) G-P(sol) polarization free energy of solvation -83.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds