Wall clock time and date at job start Tue Mar 31 2020 22:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86804 * 119.99753 * 2 1 4 4 H 1.48506 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46886 * 299.99953 * 3 2 1 6 6 H 1.48495 * 109.47153 * 59.99906 * 3 2 1 7 7 C 1.39051 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00388 * 200.33513 * 7 2 1 9 9 N 1.36877 * 119.99618 * 20.33893 * 7 2 1 10 10 C 1.46494 * 119.99798 * 210.84713 * 9 7 2 11 11 C 1.50698 * 109.47459 * 304.04594 * 10 9 7 12 12 C 1.38235 * 119.99679 * 275.18247 * 11 10 9 13 13 C 1.38237 * 119.99943 * 179.76081 * 12 11 10 14 14 C 1.38232 * 119.99790 * 0.50842 * 13 12 11 15 15 C 1.38242 * 120.00258 * 359.74137 * 14 13 12 16 16 C 1.38230 * 120.00333 * 95.44525 * 11 10 9 17 17 C 1.34774 * 120.00173 * 30.84068 * 9 7 2 18 18 O 1.21593 * 119.99954 * 6.17415 * 17 9 7 19 19 C 1.47721 * 119.99856 * 186.16402 * 17 9 7 20 20 C 1.39653 * 120.14685 * 137.94303 * 19 17 9 21 21 C 1.37941 * 119.84393 * 180.02562 * 20 19 17 22 22 C 1.38376 * 120.15299 * 359.96999 * 21 20 19 23 23 C 1.50701 * 119.84943 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.46638 * 339.99878 * 23 22 21 25 25 N 1.46901 * 109.47140 * 220.00008 * 23 22 21 26 26 C 1.52992 * 109.47214 * 99.99903 * 23 22 21 27 27 N 1.46901 * 109.47239 * 174.99855 * 26 23 22 28 28 C 1.38376 * 120.30584 * 0.28221 * 22 21 20 29 29 C 1.37942 * 120.15038 * 359.48712 * 28 22 21 30 30 H 0.96995 * 120.00274 * 4.98263 * 1 2 3 31 31 H 1.09010 * 109.47395 * 64.04351 * 10 9 7 32 32 H 1.09000 * 109.47209 * 184.04331 * 10 9 7 33 33 H 1.07998 * 119.99860 * 359.97438 * 12 11 10 34 34 H 1.07996 * 120.00282 * 180.22662 * 13 12 11 35 35 H 1.08007 * 119.99886 * 179.72439 * 14 13 12 36 36 H 1.07995 * 120.00106 * 179.97438 * 15 14 13 37 37 H 1.08000 * 120.00113 * 0.02562 * 16 11 10 38 38 H 1.07994 * 120.07822 * 359.97438 * 20 19 17 39 39 H 1.07994 * 119.92425 * 180.02562 * 21 20 19 40 40 H 1.00894 * 110.99857 * 176.04163 * 25 23 22 41 41 H 1.00892 * 111.00330 * 300.00440 * 25 23 22 42 42 H 1.08996 * 109.47433 * 295.00454 * 26 23 22 43 43 H 1.08998 * 109.47283 * 55.00195 * 26 23 22 44 44 H 1.00898 * 111.00463 * 179.97438 * 27 26 23 45 45 H 1.00896 * 111.00082 * 303.96374 * 27 26 23 46 46 H 1.07996 * 119.92696 * 179.72608 * 28 22 21 47 47 H 1.08000 * 120.07964 * 180.27403 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7077 1.3464 0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8888 2.3965 1.2124 7 6 2.0090 -1.2042 0.0005 8 1 3.0385 -1.2332 0.3256 9 7 1.3886 -2.3528 -0.4110 10 6 1.7747 -3.6417 0.1684 11 6 3.2551 -3.8530 -0.0179 12 6 3.7337 -4.3869 -1.1998 13 6 5.0921 -4.5761 -1.3727 14 6 5.9710 -4.2413 -0.3597 15 6 5.4920 -3.7122 0.8243 16 6 4.1340 -3.5181 0.9950 17 6 0.4224 -2.2979 -1.3490 18 8 0.1792 -1.2472 -1.9105 19 6 -0.3409 -3.5144 -1.6952 20 6 -1.7223 -3.4445 -1.8878 21 6 -2.4289 -4.5844 -2.2103 22 6 -1.7721 -5.7950 -2.3436 23 6 -2.5508 -7.0360 -2.6967 24 1 -3.6043 -6.8826 -2.4627 25 7 -2.0375 -8.1733 -1.9215 26 6 -2.3972 -7.3265 -4.1910 27 7 -3.0559 -8.5996 -4.5125 28 6 -0.4042 -5.8724 -2.1491 29 6 0.3155 -4.7395 -1.8309 30 1 -0.4850 0.8368 -0.0730 31 1 1.5380 -3.6474 1.2324 32 1 1.2279 -4.4424 -0.3297 33 1 3.0466 -4.6529 -1.9894 34 1 5.4663 -4.9898 -2.2974 35 1 7.0319 -4.3933 -0.4930 36 1 6.1786 -3.4510 1.6159 37 1 3.7597 -3.1053 1.9202 38 1 -2.2362 -2.5004 -1.7836 39 1 -3.4972 -4.5318 -2.3599 40 1 -2.5847 -9.0036 -2.0921 41 1 -1.0619 -8.3359 -2.1207 42 1 -2.8578 -6.5236 -4.7665 43 1 -1.3384 -7.3919 -4.4415 44 1 -2.9688 -8.8139 -5.4946 45 1 -2.6906 -9.3493 -3.9446 46 1 0.1015 -6.8212 -2.2504 47 1 1.3837 -4.8004 -1.6836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160670356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:10 Heat of formation + Delta-G solvation = 63.136373 kcal Electronic energy + Delta-G solvation = -29388.132256 eV Core-core repulsion = 25537.102284 eV Total energy + Delta-G solvation = -3851.029973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.88124 -38.87982 -37.85419 -36.30394 -34.38806 -32.75356 -32.16091 -30.86764 -30.50463 -30.37154 -29.94918 -26.90025 -25.84507 -24.56663 -22.82679 -22.66170 -21.95510 -20.92551 -20.43475 -19.51383 -17.25663 -16.86234 -16.55694 -16.30121 -15.76913 -15.36603 -15.09092 -14.95775 -14.68339 -14.45927 -14.25812 -14.11466 -13.90552 -13.56633 -13.34368 -13.12844 -12.81366 -12.71565 -12.44894 -12.37066 -12.06526 -11.93627 -11.78163 -11.45626 -11.17427 -10.94569 -10.88994 -10.73745 -10.68763 -10.49913 -10.18080 -10.01394 -9.22349 -9.03525 -8.85377 -8.53479 -8.50286 -8.36310 -8.19423 -7.93328 -7.05689 -6.06735 -3.78142 1.53580 1.72361 1.78515 1.81328 3.32984 3.42064 3.43521 3.85100 4.11131 4.19703 4.34771 4.44395 4.65908 4.88870 4.94609 5.00974 5.05726 5.14703 5.23978 5.27010 5.31023 5.32080 5.43588 5.53414 5.58602 5.66777 5.72283 5.78672 5.90234 5.95683 6.04723 6.08842 6.28778 6.32481 6.41607 6.43826 6.51146 6.64844 6.73763 6.82185 6.84658 6.87108 6.97118 6.99526 7.04908 7.10067 7.24557 7.36305 7.38855 7.60553 8.19507 9.00627 9.18505 9.65487 10.32411 10.95889 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.003907 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.946751 B = 7165.807441 C = 9307.845587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.054 3.946 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.327 4.327 8 H 0.087 0.913 9 N -0.433 5.433 10 C 0.102 3.898 11 C -0.069 4.069 12 C -0.114 4.114 13 C -0.124 4.124 14 C -0.131 4.131 15 C -0.124 4.124 16 C -0.099 4.099 17 C 0.481 3.519 18 O -0.519 6.519 19 C -0.080 4.080 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.086 4.086 23 C 0.139 3.861 24 H 0.093 0.907 25 N -0.837 5.837 26 C 0.028 3.972 27 N -0.851 5.851 28 C -0.112 4.112 29 C -0.126 4.126 30 H 0.264 0.736 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.341 0.659 41 H 0.337 0.663 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.344 0.656 45 H 0.333 0.667 46 H 0.113 0.887 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -16.666 -4.013 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.454 4.454 8 H 0.105 0.895 9 N -0.153 5.153 10 C -0.021 4.021 11 C -0.070 4.070 12 C -0.132 4.132 13 C -0.142 4.142 14 C -0.150 4.150 15 C -0.142 4.142 16 C -0.118 4.118 17 C 0.270 3.730 18 O -0.396 6.396 19 C -0.083 4.083 20 C -0.096 4.096 21 C -0.134 4.134 22 C -0.087 4.087 23 C 0.027 3.973 24 H 0.112 0.888 25 N -0.369 5.369 26 C -0.105 4.105 27 N -0.382 5.382 28 C -0.131 4.131 29 C -0.145 4.145 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.157 0.843 45 H 0.146 0.854 46 H 0.131 0.869 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.302 -15.198 -3.334 15.563 hybrid contribution 1.573 0.147 -1.188 1.977 sum 1.875 -15.052 -4.522 15.828 Atomic orbital electron populations 1.69967 1.06547 1.27661 1.39775 1.25006 0.94700 0.99108 0.96860 0.86225 0.79889 0.83113 0.77461 1.19640 1.20745 1.21300 1.19215 0.95573 0.84861 1.45702 0.89516 1.43197 1.34546 1.04303 1.33218 1.21296 0.90688 0.90231 0.99912 1.20251 0.96766 0.96222 0.93769 1.21016 0.95368 0.99895 0.96926 1.21010 0.93433 1.01078 0.98667 1.21008 0.99035 1.00751 0.94179 1.21084 0.95521 1.00043 0.97583 1.21114 0.92909 0.98384 0.99357 1.17547 0.84761 0.87155 0.83550 1.90617 1.67584 1.30085 1.51303 1.20605 0.94569 0.94522 0.98653 1.21220 0.93164 0.98394 0.96774 1.20869 0.99448 0.92056 1.00999 1.19555 0.93736 0.93753 1.01671 1.20287 0.99072 0.88942 0.88989 0.88846 1.58869 1.07325 1.08347 1.62317 1.22639 0.96663 0.92696 0.98506 1.58710 1.64134 1.04928 1.10385 1.20643 0.93545 0.97638 1.01266 1.21663 1.00473 0.92162 1.00156 0.92601 0.92134 0.87806 0.86558 0.86699 0.86832 0.86607 0.85950 0.85324 0.86296 0.84463 0.84919 0.90115 0.95144 0.84342 0.85354 0.86902 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -23.84 10.78 55.50 0.60 -23.24 16 2 C 0.05 1.53 4.37 -17.45 -0.08 1.45 16 3 Si 0.91 22.07 29.60 -169.99 -5.03 17.03 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.33 -8.89 9.00 -15.00 -0.14 -9.02 16 8 H 0.09 2.29 6.63 -52.49 -0.35 1.94 16 9 N -0.43 -10.77 2.78 -117.22 -0.33 -11.10 16 10 C 0.10 2.02 5.44 -5.20 -0.03 2.00 16 11 C -0.07 -1.24 4.73 -104.63 -0.49 -1.73 16 12 C -0.11 -1.85 9.43 -39.58 -0.37 -2.23 16 13 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 14 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 15 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 16 C -0.10 -1.67 8.70 -39.59 -0.34 -2.01 16 17 C 0.48 12.49 6.52 -12.39 -0.08 12.41 16 18 O -0.52 -15.64 13.82 5.28 0.07 -15.56 16 19 C -0.08 -1.67 5.41 -104.97 -0.57 -2.24 16 20 C -0.08 -1.48 9.66 -39.16 -0.38 -1.86 16 21 C -0.12 -1.79 9.65 -39.64 -0.38 -2.17 16 22 C -0.09 -1.18 4.97 -104.52 -0.52 -1.70 16 23 C 0.14 1.50 3.33 -68.87 -0.23 1.27 16 24 H 0.09 1.07 8.00 -51.93 -0.42 0.66 16 25 N -0.84 -7.86 8.85 -5.65 -0.05 -7.91 16 26 C 0.03 0.26 6.48 -3.83 -0.02 0.23 16 27 N -0.85 -6.40 9.55 -10.37 -0.10 -6.50 16 28 C -0.11 -1.59 9.28 -39.64 -0.37 -1.96 16 29 C -0.13 -2.16 7.46 -39.16 -0.29 -2.45 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.06 1.20 8.05 -51.92 -0.42 0.78 16 32 H 0.10 1.88 3.04 -53.93 -0.16 1.71 16 33 H 0.12 1.78 5.91 -52.49 -0.31 1.47 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 38 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 39 H 0.12 1.56 8.03 -52.49 -0.42 1.14 16 40 H 0.34 2.58 7.45 -39.30 -0.29 2.28 16 41 H 0.34 2.84 7.32 -39.30 -0.29 2.55 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.34 2.13 9.08 -39.29 -0.36 1.77 16 45 H 0.33 2.02 7.24 -39.29 -0.28 1.73 16 46 H 0.11 1.28 6.64 -52.49 -0.35 0.93 16 47 H 0.14 2.22 3.24 -52.49 -0.17 2.05 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -33.68 376.76 -10.56 -44.24 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -5.91 Total: 14.01 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -5.49 Total: -16.64 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.12 Total: -48.75 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.07 Total: -15.56 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.68 -10.56 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160670356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.376 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds