Wall clock time and date at job start Tue Mar 31 2020 22:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86804 * 119.99753 * 2 1 4 4 H 1.48506 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46886 * 299.99953 * 3 2 1 6 6 H 1.48495 * 109.47153 * 59.99906 * 3 2 1 7 7 C 1.39051 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00388 * 200.33513 * 7 2 1 9 9 N 1.36877 * 119.99618 * 20.33893 * 7 2 1 10 10 C 1.46494 * 119.99798 * 210.84713 * 9 7 2 11 11 C 1.50698 * 109.47459 * 304.04594 * 10 9 7 12 12 C 1.38235 * 119.99679 * 275.18247 * 11 10 9 13 13 C 1.38237 * 119.99943 * 179.76081 * 12 11 10 14 14 C 1.38232 * 119.99790 * 0.50842 * 13 12 11 15 15 C 1.38242 * 120.00258 * 359.74137 * 14 13 12 16 16 C 1.38230 * 120.00333 * 95.44525 * 11 10 9 17 17 C 1.34774 * 120.00173 * 30.84068 * 9 7 2 18 18 O 1.21593 * 119.99954 * 6.17415 * 17 9 7 19 19 C 1.47721 * 119.99856 * 186.16402 * 17 9 7 20 20 C 1.39653 * 120.14685 * 137.94303 * 19 17 9 21 21 C 1.37941 * 119.84393 * 180.02562 * 20 19 17 22 22 C 1.38376 * 120.15299 * 359.96999 * 21 20 19 23 23 C 1.50701 * 119.84943 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.46638 * 339.99878 * 23 22 21 25 25 N 1.46901 * 109.47140 * 220.00008 * 23 22 21 26 26 C 1.52992 * 109.47214 * 99.99903 * 23 22 21 27 27 N 1.46901 * 109.47239 * 174.99855 * 26 23 22 28 28 C 1.38376 * 120.30584 * 0.28221 * 22 21 20 29 29 C 1.37942 * 120.15038 * 359.48712 * 28 22 21 30 30 H 0.96995 * 120.00274 * 4.98263 * 1 2 3 31 31 H 1.09010 * 109.47395 * 64.04351 * 10 9 7 32 32 H 1.09000 * 109.47209 * 184.04331 * 10 9 7 33 33 H 1.07998 * 119.99860 * 359.97438 * 12 11 10 34 34 H 1.07996 * 120.00282 * 180.22662 * 13 12 11 35 35 H 1.08007 * 119.99886 * 179.72439 * 14 13 12 36 36 H 1.07995 * 120.00106 * 179.97438 * 15 14 13 37 37 H 1.08000 * 120.00113 * 0.02562 * 16 11 10 38 38 H 1.07994 * 120.07822 * 359.97438 * 20 19 17 39 39 H 1.07994 * 119.92425 * 180.02562 * 21 20 19 40 40 H 1.00894 * 110.99857 * 176.04163 * 25 23 22 41 41 H 1.00892 * 111.00330 * 300.00440 * 25 23 22 42 42 H 1.08996 * 109.47433 * 295.00454 * 26 23 22 43 43 H 1.08998 * 109.47283 * 55.00195 * 26 23 22 44 44 H 1.00898 * 111.00463 * 179.97438 * 27 26 23 45 45 H 1.00896 * 111.00082 * 303.96374 * 27 26 23 46 46 H 1.07996 * 119.92696 * 179.72608 * 28 22 21 47 47 H 1.08000 * 120.07964 * 180.27403 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7077 1.3464 0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8888 2.3965 1.2124 7 6 2.0090 -1.2042 0.0005 8 1 3.0385 -1.2332 0.3256 9 7 1.3886 -2.3528 -0.4110 10 6 1.7747 -3.6417 0.1684 11 6 3.2551 -3.8530 -0.0179 12 6 3.7337 -4.3869 -1.1998 13 6 5.0921 -4.5761 -1.3727 14 6 5.9710 -4.2413 -0.3597 15 6 5.4920 -3.7122 0.8243 16 6 4.1340 -3.5181 0.9950 17 6 0.4224 -2.2979 -1.3490 18 8 0.1792 -1.2472 -1.9105 19 6 -0.3409 -3.5144 -1.6952 20 6 -1.7223 -3.4445 -1.8878 21 6 -2.4289 -4.5844 -2.2103 22 6 -1.7721 -5.7950 -2.3436 23 6 -2.5508 -7.0360 -2.6967 24 1 -3.6043 -6.8826 -2.4627 25 7 -2.0375 -8.1733 -1.9215 26 6 -2.3972 -7.3265 -4.1910 27 7 -3.0559 -8.5996 -4.5125 28 6 -0.4042 -5.8724 -2.1491 29 6 0.3155 -4.7395 -1.8309 30 1 -0.4850 0.8368 -0.0730 31 1 1.5380 -3.6474 1.2324 32 1 1.2279 -4.4424 -0.3297 33 1 3.0466 -4.6529 -1.9894 34 1 5.4663 -4.9898 -2.2974 35 1 7.0319 -4.3933 -0.4930 36 1 6.1786 -3.4510 1.6159 37 1 3.7597 -3.1053 1.9202 38 1 -2.2362 -2.5004 -1.7836 39 1 -3.4972 -4.5318 -2.3599 40 1 -2.5847 -9.0036 -2.0921 41 1 -1.0619 -8.3359 -2.1207 42 1 -2.8578 -6.5236 -4.7665 43 1 -1.3384 -7.3919 -4.4415 44 1 -2.9688 -8.8139 -5.4946 45 1 -2.6906 -9.3493 -3.9446 46 1 0.1015 -6.8212 -2.2504 47 1 1.3837 -4.8004 -1.6836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160670356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:10 Heat of formation + Delta-G solvation = 39.418654 kcal Electronic energy + Delta-G solvation = -29389.160734 eV Core-core repulsion = 25537.102284 eV Total energy + Delta-G solvation = -3852.058450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37311 -40.09201 -39.35342 -37.41697 -36.22212 -34.31896 -33.31481 -32.18198 -31.97552 -31.62418 -31.22335 -28.09681 -27.36054 -26.19712 -24.13355 -23.94657 -23.19196 -22.20728 -21.74760 -21.04461 -18.96244 -18.05747 -17.88504 -17.36031 -17.04227 -16.75679 -16.43349 -16.18776 -16.09005 -15.76134 -15.57537 -15.27242 -15.21027 -15.18332 -14.70766 -14.43373 -14.04764 -13.97044 -13.86072 -13.58867 -13.43749 -13.24970 -13.20917 -12.96573 -12.85066 -12.56447 -12.44786 -12.21372 -12.11160 -12.03889 -11.92590 -11.40021 -11.01313 -10.17130 -9.89200 -9.81118 -9.73232 -9.65232 -9.55083 -9.35382 -9.11032 -8.17136 -5.91648 0.14875 0.44075 0.53143 0.59290 1.34983 1.41315 1.49707 2.30420 2.39943 2.84906 2.91706 3.28028 3.35295 3.46881 3.64397 3.83370 3.97702 4.02208 4.04012 4.09375 4.13310 4.21586 4.25844 4.27755 4.33227 4.39829 4.56314 4.58351 4.69026 4.82043 4.83258 4.87134 4.88351 4.96708 5.11945 5.18864 5.24418 5.36606 5.45197 5.60489 5.60924 5.66183 5.68032 5.82753 5.99819 6.09884 6.14262 6.21134 6.25138 6.50434 6.63390 6.95740 7.19605 7.65602 8.35533 8.85560 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.003907 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.946751 B = 7165.807441 C = 9307.845587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.340 4.340 8 H 0.090 0.910 9 N -0.444 5.444 10 C 0.104 3.896 11 C -0.092 4.092 12 C -0.126 4.126 13 C -0.123 4.123 14 C -0.126 4.126 15 C -0.126 4.126 16 C -0.119 4.119 17 C 0.473 3.527 18 O -0.577 6.577 19 C -0.116 4.116 20 C -0.096 4.096 21 C -0.110 4.110 22 C -0.067 4.067 23 C 0.146 3.854 24 H 0.091 0.909 25 N -0.841 5.841 26 C 0.035 3.965 27 N -0.852 5.852 28 C -0.100 4.100 29 C -0.122 4.122 30 H 0.256 0.744 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.355 0.645 41 H 0.346 0.654 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.354 0.646 45 H 0.344 0.656 46 H 0.154 0.846 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 -20.426 -4.901 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.204 4.204 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.108 0.892 9 N -0.163 5.163 10 C -0.018 4.018 11 C -0.093 4.093 12 C -0.144 4.144 13 C -0.141 4.141 14 C -0.143 4.143 15 C -0.144 4.144 16 C -0.138 4.138 17 C 0.263 3.737 18 O -0.458 6.458 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.069 4.069 23 C 0.034 3.966 24 H 0.109 0.891 25 N -0.375 5.375 26 C -0.098 4.098 27 N -0.385 5.385 28 C -0.118 4.118 29 C -0.140 4.140 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.160 0.840 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.167 0.833 45 H 0.158 0.842 46 H 0.171 0.829 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.077 -19.020 -4.191 19.586 hybrid contribution 1.025 1.081 -0.963 1.774 sum 3.101 -17.938 -5.154 18.920 Atomic orbital electron populations 1.70086 1.08057 1.27685 1.42363 1.25875 0.95361 1.02373 0.96801 0.85316 0.79354 0.79288 0.77007 1.18113 1.22214 1.20115 1.19455 0.95898 0.86110 1.45256 0.89206 1.43377 1.34334 1.05534 1.33046 1.21400 0.92891 0.88433 0.99066 1.20105 0.95343 0.98550 0.95345 1.21170 0.96779 1.00147 0.96318 1.21396 0.92486 1.00165 1.00045 1.21464 1.00827 0.98852 0.93203 1.21407 0.94734 0.99347 0.98890 1.21207 0.94215 0.99289 0.99070 1.18389 0.84583 0.88066 0.82634 1.90550 1.69066 1.32750 1.53452 1.20303 0.95008 0.94214 1.02427 1.21106 0.92961 0.98791 0.98705 1.21080 1.00577 0.91316 0.99894 1.19971 0.93942 0.94361 0.98607 1.20161 0.98283 0.87967 0.90230 0.89051 1.58801 1.08158 1.08510 1.62030 1.22459 0.96996 0.93436 0.96953 1.58644 1.63927 1.04528 1.11376 1.21024 0.93653 0.98026 0.99055 1.21691 1.00943 0.91485 0.99874 0.93428 0.93169 0.86103 0.86118 0.83628 0.83291 0.84086 0.86821 0.88367 0.83829 0.82902 0.83971 0.91093 0.94728 0.83256 0.84178 0.82853 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -53.55 10.78 21.68 0.23 -53.31 16 2 C 0.00 0.15 4.37 84.96 0.37 0.52 16 3 Si 0.97 47.32 29.60 68.60 2.03 49.35 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.34 -19.36 9.00 84.10 0.76 -18.60 16 8 H 0.09 4.91 6.63 -2.91 -0.02 4.89 16 9 N -0.44 -23.30 2.78 -643.02 -1.79 -25.08 16 10 C 0.10 4.29 5.44 85.63 0.47 4.76 16 11 C -0.09 -3.33 4.73 -19.87 -0.09 -3.43 16 12 C -0.13 -3.94 9.43 22.27 0.21 -3.73 16 13 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 14 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 15 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 16 C -0.12 -4.00 8.70 22.27 0.19 -3.81 16 17 C 0.47 26.16 6.52 86.75 0.57 26.73 16 18 O -0.58 -37.43 13.82 -4.01 -0.06 -37.49 16 19 C -0.12 -5.09 5.41 -20.09 -0.11 -5.20 16 20 C -0.10 -3.93 9.66 22.54 0.22 -3.72 16 21 C -0.11 -3.36 9.65 22.23 0.21 -3.14 16 22 C -0.07 -1.70 4.97 -19.80 -0.10 -1.79 16 23 C 0.15 2.64 3.33 44.17 0.15 2.79 16 24 H 0.09 1.79 8.00 -2.38 -0.02 1.77 16 25 N -0.84 -12.36 8.85 -171.80 -1.52 -13.88 16 26 C 0.03 0.53 6.48 86.30 0.56 1.09 16 27 N -0.85 -9.80 9.55 -186.73 -1.78 -11.59 16 28 C -0.10 -2.54 9.28 22.23 0.21 -2.33 16 29 C -0.12 -4.10 7.46 22.54 0.17 -3.93 16 30 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.05 2.11 8.05 -2.38 -0.02 2.09 16 32 H 0.12 4.45 3.04 -4.27 -0.01 4.44 16 33 H 0.12 3.55 5.91 -2.91 -0.02 3.54 16 34 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 38 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.14 3.59 8.03 -2.91 -0.02 3.57 16 40 H 0.35 3.87 7.45 -89.70 -0.67 3.20 16 41 H 0.35 4.16 7.32 -89.70 -0.66 3.50 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.35 3.20 9.08 -89.70 -0.81 2.39 16 45 H 0.34 2.79 7.24 -89.70 -0.65 2.14 16 46 H 0.15 2.72 6.64 -2.91 -0.02 2.70 16 47 H 0.14 4.59 3.24 -2.91 -0.01 4.58 16 Total: -1.00 -79.95 376.76 -0.17 -80.12 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -1.73 Total: 34.62 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.45 Total: -22.74 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -4.86 Total: -103.87 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.06 Total: -37.49 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -79.95 -0.17 -80.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160670356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.540 kcal (2) G-P(sol) polarization free energy of solvation -79.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds