Wall clock time and date at job start Tue Mar 31 2020 22:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00121 * 2 1 4 4 H 1.48504 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46999 * 299.99855 * 3 2 1 6 6 H 1.48494 * 109.46872 * 59.99576 * 3 2 1 7 7 C 1.38811 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00104 * 164.51636 * 7 2 1 9 9 N 1.36941 * 119.99652 * 344.51948 * 7 2 1 10 10 C 1.47003 * 121.37655 * 335.96811 * 9 7 2 11 11 C 1.50316 * 109.16681 * 222.96646 * 10 9 7 12 12 C 1.29458 * 123.65029 * 349.02683 * 11 10 9 13 13 C 1.50705 * 117.69303 * 180.85367 * 12 11 10 14 14 C 1.53001 * 109.47160 * 94.99636 * 13 12 11 15 15 N 1.46495 * 109.47210 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99740 * 180.02562 * 15 14 13 17 17 O 1.21605 * 120.00364 * 0.02562 * 16 15 14 18 18 C 1.47377 * 119.99777 * 179.97438 * 16 15 14 19 19 C 1.39318 * 120.34604 * 0.02562 * 18 16 15 20 20 C 1.38276 * 120.20402 * 179.97438 * 19 18 16 21 21 C 1.38057 * 120.88146 * 359.97438 * 20 19 18 22 22 C 1.38987 * 120.27146 * 359.97438 * 21 20 19 23 23 N 1.37791 * 133.37641 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.08025 * 359.97438 * 23 22 21 25 25 C 1.36556 * 109.85390 * 179.97438 * 23 22 21 26 26 C 1.34553 * 109.89275 * 0.02562 * 25 23 22 27 27 C 1.40669 * 119.51529 * 0.31921 * 22 21 20 28 28 C 1.49965 * 124.61548 * 1.13601 * 12 11 10 29 29 C 1.47341 * 121.37066 * 155.99165 * 9 7 2 30 30 H 0.97005 * 119.99891 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.51680 * 103.06336 * 10 9 7 32 32 H 1.08996 * 109.52120 * 342.87913 * 10 9 7 33 33 H 1.08007 * 118.17597 * 168.99814 * 11 10 9 34 34 H 1.09002 * 109.46987 * 334.99840 * 13 12 11 35 35 H 1.08992 * 109.47459 * 214.99910 * 13 12 11 36 36 H 1.09005 * 109.46789 * 59.99740 * 14 13 12 37 37 H 1.08992 * 109.47159 * 300.00458 * 14 13 12 38 38 H 0.96996 * 120.00032 * 0.02562 * 15 14 13 39 39 H 1.08006 * 119.90136 * 359.97034 * 19 18 16 40 40 H 1.07991 * 119.56103 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.86975 * 180.02562 * 21 20 19 42 42 H 1.07996 * 125.05164 * 180.02562 * 25 23 22 43 43 H 1.07997 * 126.49030 * 179.97438 * 26 25 23 44 44 H 1.08995 * 109.31790 * 101.00961 * 28 12 11 45 45 H 1.08999 * 109.31653 * 220.44436 * 28 12 11 46 46 H 1.09001 * 109.77626 * 237.78430 * 29 9 7 47 47 H 1.08997 * 109.78379 * 358.59283 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0608 -1.2191 -0.2491 9 7 1.3628 -2.3664 0.3176 10 6 0.1444 -2.3651 1.1401 11 6 0.2245 -3.4822 2.1427 12 6 1.1203 -4.4161 2.1060 13 6 1.0639 -5.4828 3.1691 14 6 0.2870 -6.6899 2.6396 15 7 0.2327 -7.7271 3.6727 16 6 -0.4052 -8.8889 3.4282 17 8 -0.9351 -9.0765 2.3499 18 6 -0.4594 -9.9326 4.4674 19 6 0.1457 -9.7256 5.7051 20 6 0.0926 -10.7066 6.6781 21 6 -0.5570 -11.9021 6.4443 22 6 -1.1712 -12.1380 5.2200 23 7 -1.8772 -13.2034 4.7052 24 1 -2.0641 -14.0292 5.1784 25 6 -2.2744 -12.9233 3.4290 26 6 -1.8509 -11.6958 3.0767 27 6 -1.1205 -11.1522 4.2179 28 6 2.2138 -4.5080 1.0839 29 6 1.8590 -3.6721 -0.1511 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7265 -2.5110 0.5010 32 1 0.0585 -1.4123 1.6623 33 1 -0.5056 -3.5068 2.9382 34 1 0.5635 -5.0882 4.0535 35 1 2.0766 -5.7889 3.4309 36 1 0.7873 -7.0844 1.7551 37 1 -0.7258 -6.3838 2.3778 38 1 0.6557 -7.5777 4.5327 39 1 0.6580 -8.7960 5.9052 40 1 0.5656 -10.5353 7.6337 41 1 -0.5888 -12.6569 7.2161 42 1 -2.8439 -13.5882 2.7967 43 1 -2.0158 -11.2072 2.1278 44 1 3.1441 -4.1407 1.5172 45 1 2.3437 -5.5488 0.7874 46 1 1.0847 -4.1744 -0.7310 47 1 2.7475 -3.5299 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161296376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:17 Heat of formation + Delta-G solvation = 60.632730 kcal Electronic energy + Delta-G solvation = -27656.111167 eV Core-core repulsion = 23804.972628 eV Total energy + Delta-G solvation = -3851.138539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59996 -39.59492 -37.85663 -36.98319 -35.36273 -33.53025 -32.31982 -31.36380 -30.07938 -29.67100 -29.26297 -28.33541 -25.44540 -24.10320 -22.97036 -22.46717 -21.99975 -21.20189 -20.94388 -20.51289 -18.48168 -17.57006 -17.08591 -16.38837 -16.13222 -15.62142 -15.43029 -15.38944 -14.99706 -14.71748 -14.37539 -14.10113 -13.87444 -13.74911 -13.50828 -13.25945 -13.21066 -12.98001 -12.60063 -12.22441 -12.09623 -11.91932 -11.87169 -11.74480 -11.51617 -11.35741 -10.94899 -10.88017 -10.70860 -10.25760 -10.22002 -10.01893 -9.87201 -9.76588 -9.48708 -9.05987 -8.61927 -8.61127 -8.03918 -7.87039 -6.68146 -5.74808 -3.13365 0.38658 1.21048 2.43206 2.75437 2.80358 2.88741 3.24181 3.40118 3.47499 3.49838 3.73841 4.36966 4.48708 4.53091 4.60270 4.74985 4.86397 5.01712 5.17686 5.22417 5.25342 5.32630 5.43579 5.45580 5.55571 5.62318 5.70926 5.81127 5.85813 6.02109 6.05817 6.07639 6.11832 6.21238 6.27095 6.31544 6.43466 6.45415 6.47629 6.60889 6.75482 6.84160 6.96025 7.15779 7.28816 7.37505 7.44872 7.49469 7.79619 7.93574 8.20981 8.43348 9.24843 9.87828 10.46636 11.35553 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030662 B = 0.001774 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.965833 B =15782.610226 C =16170.429853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.147 4.147 12 C -0.142 4.142 13 C -0.092 4.092 14 C 0.125 3.875 15 N -0.726 5.726 16 C 0.555 3.445 17 O -0.531 6.531 18 C -0.087 4.087 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.105 4.105 22 C 0.084 3.916 23 N -0.597 5.597 24 H 0.416 0.584 25 C 0.047 3.953 26 C -0.185 4.185 27 C -0.058 4.058 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.397 0.603 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.173 0.827 43 H 0.158 0.842 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.024 0.976 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -27.299 15.167 31.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.166 4.166 12 C -0.143 4.143 13 C -0.130 4.130 14 C 0.002 3.998 15 N -0.378 5.378 16 C 0.342 3.658 17 O -0.408 6.408 18 C -0.091 4.091 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.023 4.023 23 N -0.200 5.200 24 H 0.252 0.748 25 C -0.079 4.079 26 C -0.209 4.209 27 C -0.064 4.064 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.190 0.810 43 H 0.176 0.824 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.553 -27.363 14.370 31.012 hybrid contribution 0.448 0.537 0.800 1.062 sum -2.105 -26.826 15.170 30.890 Atomic orbital electron populations 1.70029 1.05158 1.25293 1.54991 1.24992 0.95391 0.98263 1.01434 0.86191 0.79231 0.83974 0.77216 1.20337 1.21785 1.21656 1.19229 0.92213 0.84401 1.41434 0.91368 1.44146 1.29272 1.01155 1.57340 1.19701 0.88627 0.94765 0.89765 1.23117 0.96710 0.97384 0.99432 1.20226 0.99293 0.96548 0.98204 1.20915 0.99991 0.94175 0.97888 1.21443 1.01275 0.86589 0.90466 1.46031 1.56766 1.16526 1.18510 1.18133 0.78634 0.81781 0.87218 1.90766 1.45406 1.79578 1.25055 1.19401 1.01377 0.93759 0.94524 1.21124 0.99687 0.99583 0.92474 1.20705 0.99959 0.92781 0.99442 1.20170 0.99711 0.98509 0.94201 1.18191 0.99540 0.89135 0.95435 1.41722 1.48556 1.16182 1.13578 0.74756 1.22004 1.02015 0.98204 0.85658 1.21990 1.04097 0.94938 0.99896 1.18995 1.00141 0.92838 0.94434 1.20791 0.96539 0.99024 0.96657 1.20995 0.97307 0.87215 0.92858 0.93713 0.94430 0.89182 0.89067 0.91541 0.91467 0.91175 0.91183 0.76760 0.85447 0.85024 0.85915 0.80969 0.82431 0.91935 0.92882 0.95775 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.66 11.08 55.49 0.61 -26.05 16 2 C 0.00 -0.09 5.01 -17.43 -0.09 -0.17 16 3 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.78 9.71 -15.06 -0.15 -6.93 16 8 H 0.07 1.86 7.88 -52.49 -0.41 1.45 16 9 N -0.60 -15.31 3.01 -173.56 -0.52 -15.83 16 10 C 0.20 4.81 5.23 -5.11 -0.03 4.78 16 11 C -0.15 -2.89 9.47 -35.78 -0.34 -3.23 16 12 C -0.14 -2.49 5.11 -100.99 -0.52 -3.00 16 13 C -0.09 -1.22 5.32 -27.88 -0.15 -1.37 16 14 C 0.13 1.69 5.66 -4.04 -0.02 1.67 16 15 N -0.73 -8.46 5.51 -61.40 -0.34 -8.80 16 16 C 0.56 7.67 7.76 -12.54 -0.10 7.57 16 17 O -0.53 -9.16 15.09 5.27 0.08 -9.08 16 18 C -0.09 -1.02 5.90 -104.75 -0.62 -1.64 16 19 C -0.11 -0.94 9.53 -39.17 -0.37 -1.31 16 20 C -0.11 -0.78 9.99 -39.63 -0.40 -1.18 16 21 C -0.10 -0.77 10.05 -39.37 -0.40 -1.17 16 22 C 0.08 0.78 7.27 -83.99 -0.61 0.17 16 23 N -0.60 -4.04 6.06 -10.66 -0.06 -4.10 16 24 H 0.42 1.35 8.96 -40.82 -0.37 0.99 16 25 C 0.05 0.36 11.82 -16.75 -0.20 0.16 16 26 C -0.18 -2.07 10.24 -37.78 -0.39 -2.46 16 27 C -0.06 -0.69 6.15 -104.85 -0.64 -1.34 16 28 C -0.09 -1.64 5.95 -28.09 -0.17 -1.80 16 29 C 0.14 3.07 6.59 -3.43 -0.02 3.05 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 33 H 0.09 1.60 7.73 -52.48 -0.41 1.19 16 34 H 0.07 0.82 7.78 -51.93 -0.40 0.41 16 35 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 36 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.40 3.42 6.51 -40.82 -0.27 3.15 16 39 H 0.13 0.78 6.40 -52.48 -0.34 0.45 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.16 1.95 7.16 -52.49 -0.38 1.57 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -34.74 384.55 -11.33 -46.07 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.67 Total: 3.26 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -5.20 Total: -8.20 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.31 Total: -54.78 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.74 -11.33 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161296376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.706 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds