Wall clock time and date at job start Tue Mar 31 2020 22:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00121 * 2 1 4 4 H 1.48504 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46999 * 299.99855 * 3 2 1 6 6 H 1.48494 * 109.46872 * 59.99576 * 3 2 1 7 7 C 1.38811 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00104 * 164.51636 * 7 2 1 9 9 N 1.36941 * 119.99652 * 344.51948 * 7 2 1 10 10 C 1.47003 * 121.37655 * 335.96811 * 9 7 2 11 11 C 1.50316 * 109.16681 * 222.96646 * 10 9 7 12 12 C 1.29458 * 123.65029 * 349.02683 * 11 10 9 13 13 C 1.50705 * 117.69303 * 180.85367 * 12 11 10 14 14 C 1.53001 * 109.47160 * 94.99636 * 13 12 11 15 15 N 1.46495 * 109.47210 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99740 * 180.02562 * 15 14 13 17 17 O 1.21605 * 120.00364 * 0.02562 * 16 15 14 18 18 C 1.47377 * 119.99777 * 179.97438 * 16 15 14 19 19 C 1.39318 * 120.34604 * 0.02562 * 18 16 15 20 20 C 1.38276 * 120.20402 * 179.97438 * 19 18 16 21 21 C 1.38057 * 120.88146 * 359.97438 * 20 19 18 22 22 C 1.38987 * 120.27146 * 359.97438 * 21 20 19 23 23 N 1.37791 * 133.37641 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.08025 * 359.97438 * 23 22 21 25 25 C 1.36556 * 109.85390 * 179.97438 * 23 22 21 26 26 C 1.34553 * 109.89275 * 0.02562 * 25 23 22 27 27 C 1.40669 * 119.51529 * 0.31921 * 22 21 20 28 28 C 1.49965 * 124.61548 * 1.13601 * 12 11 10 29 29 C 1.47341 * 121.37066 * 155.99165 * 9 7 2 30 30 H 0.97005 * 119.99891 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.51680 * 103.06336 * 10 9 7 32 32 H 1.08996 * 109.52120 * 342.87913 * 10 9 7 33 33 H 1.08007 * 118.17597 * 168.99814 * 11 10 9 34 34 H 1.09002 * 109.46987 * 334.99840 * 13 12 11 35 35 H 1.08992 * 109.47459 * 214.99910 * 13 12 11 36 36 H 1.09005 * 109.46789 * 59.99740 * 14 13 12 37 37 H 1.08992 * 109.47159 * 300.00458 * 14 13 12 38 38 H 0.96996 * 120.00032 * 0.02562 * 15 14 13 39 39 H 1.08006 * 119.90136 * 359.97034 * 19 18 16 40 40 H 1.07991 * 119.56103 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.86975 * 180.02562 * 21 20 19 42 42 H 1.07996 * 125.05164 * 180.02562 * 25 23 22 43 43 H 1.07997 * 126.49030 * 179.97438 * 26 25 23 44 44 H 1.08995 * 109.31790 * 101.00961 * 28 12 11 45 45 H 1.08999 * 109.31653 * 220.44436 * 28 12 11 46 46 H 1.09001 * 109.77626 * 237.78430 * 29 9 7 47 47 H 1.08997 * 109.78379 * 358.59283 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0608 -1.2191 -0.2491 9 7 1.3628 -2.3664 0.3176 10 6 0.1444 -2.3651 1.1401 11 6 0.2245 -3.4822 2.1427 12 6 1.1203 -4.4161 2.1060 13 6 1.0639 -5.4828 3.1691 14 6 0.2870 -6.6899 2.6396 15 7 0.2327 -7.7271 3.6727 16 6 -0.4052 -8.8889 3.4282 17 8 -0.9351 -9.0765 2.3499 18 6 -0.4594 -9.9326 4.4674 19 6 0.1457 -9.7256 5.7051 20 6 0.0926 -10.7066 6.6781 21 6 -0.5570 -11.9021 6.4443 22 6 -1.1712 -12.1380 5.2200 23 7 -1.8772 -13.2034 4.7052 24 1 -2.0641 -14.0292 5.1784 25 6 -2.2744 -12.9233 3.4290 26 6 -1.8509 -11.6958 3.0767 27 6 -1.1205 -11.1522 4.2179 28 6 2.2138 -4.5080 1.0839 29 6 1.8590 -3.6721 -0.1511 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7265 -2.5110 0.5010 32 1 0.0585 -1.4123 1.6623 33 1 -0.5056 -3.5068 2.9382 34 1 0.5635 -5.0882 4.0535 35 1 2.0766 -5.7889 3.4309 36 1 0.7873 -7.0844 1.7551 37 1 -0.7258 -6.3838 2.3778 38 1 0.6557 -7.5777 4.5327 39 1 0.6580 -8.7960 5.9052 40 1 0.5656 -10.5353 7.6337 41 1 -0.5888 -12.6569 7.2161 42 1 -2.8439 -13.5882 2.7967 43 1 -2.0158 -11.2072 2.1278 44 1 3.1441 -4.1407 1.5172 45 1 2.3437 -5.5488 0.7874 46 1 1.0847 -4.1744 -0.7310 47 1 2.7475 -3.5299 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161296376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:16 Heat of formation + Delta-G solvation = 38.640604 kcal Electronic energy + Delta-G solvation = -27657.064817 eV Core-core repulsion = 23804.972628 eV Total energy + Delta-G solvation = -3852.092189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24249 -40.59525 -39.44069 -37.64495 -36.72894 -35.10610 -33.29376 -32.85169 -31.50974 -30.85848 -30.01482 -29.52915 -27.12901 -25.16532 -24.47765 -23.84951 -22.70540 -22.43320 -22.02122 -21.39383 -19.48000 -19.22885 -17.90375 -17.50641 -17.04658 -17.03741 -16.75519 -16.51151 -15.97271 -15.75822 -15.56975 -15.31450 -15.22003 -15.05419 -14.82510 -14.65655 -14.27869 -13.93221 -13.85537 -13.54608 -13.38371 -13.20722 -12.87914 -12.80141 -12.60991 -12.60094 -12.53724 -12.43561 -12.33543 -12.12182 -11.88299 -11.66503 -11.23768 -10.85953 -10.70989 -10.69136 -10.12249 -9.48178 -9.22867 -8.75071 -8.68889 -7.87702 -5.30058 -0.30672 0.60280 1.42246 1.46645 1.47427 1.58759 1.69543 1.98192 2.18227 2.28330 2.51222 2.99487 3.28908 3.64525 3.70270 3.92518 3.97427 4.03517 4.08709 4.12786 4.25723 4.29645 4.30545 4.43178 4.56129 4.59221 4.66185 4.69301 4.86386 4.88694 4.92296 4.93953 4.98339 5.10037 5.12876 5.18278 5.24193 5.39954 5.42009 5.44258 5.46623 5.50709 5.61381 5.70074 5.75345 5.88724 6.12067 6.29104 6.33956 6.58236 6.72607 7.13293 7.25409 7.83297 8.38551 9.21113 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030662 B = 0.001774 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.965833 B =15782.610226 C =16170.429853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.207 3.793 11 C -0.175 4.175 12 C -0.120 4.120 13 C -0.078 4.078 14 C 0.134 3.866 15 N -0.711 5.711 16 C 0.550 3.450 17 O -0.580 6.580 18 C -0.127 4.127 19 C -0.097 4.097 20 C -0.114 4.114 21 C -0.092 4.092 22 C 0.067 3.933 23 N -0.581 5.581 24 H 0.435 0.565 25 C 0.078 3.922 26 C -0.242 4.242 27 C -0.091 4.091 28 C -0.087 4.087 29 C 0.135 3.865 30 H 0.249 0.751 31 H 0.001 0.999 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.415 0.585 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.157 0.843 42 H 0.210 0.790 43 H 0.129 0.871 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.016 0.984 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -29.859 18.584 35.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.194 4.194 12 C -0.121 4.121 13 C -0.115 4.115 14 C 0.010 3.990 15 N -0.364 5.364 16 C 0.339 3.661 17 O -0.461 6.461 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.113 4.113 22 C -0.040 4.040 23 N -0.186 5.186 24 H 0.275 0.725 25 C -0.050 4.050 26 C -0.267 4.267 27 C -0.097 4.097 28 C -0.126 4.126 29 C 0.010 3.990 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.253 0.747 39 H 0.169 0.831 40 H 0.185 0.815 41 H 0.175 0.825 42 H 0.227 0.773 43 H 0.147 0.853 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.035 0.965 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.693 -29.963 17.846 34.882 hybrid contribution -0.110 1.181 -0.278 1.218 sum -0.803 -28.782 17.568 33.730 Atomic orbital electron populations 1.70209 1.06692 1.25712 1.56310 1.25822 0.96209 1.01587 1.01704 0.85127 0.78560 0.79569 0.76728 1.18898 1.21990 1.21660 1.19586 0.92585 0.85558 1.40868 0.91022 1.44438 1.29424 1.02091 1.57956 1.19349 0.87261 0.95274 0.89971 1.22826 0.99423 0.97212 0.99936 1.20573 0.97167 0.96174 0.98138 1.20808 1.01790 0.92233 0.96710 1.21173 0.99939 0.87118 0.90769 1.45804 1.56353 1.15467 1.18814 1.18631 0.77788 0.82466 0.87185 1.90735 1.47593 1.80566 1.27172 1.19385 1.04571 0.93640 0.95448 1.21470 0.98095 1.00873 0.91271 1.21161 0.99664 0.92133 1.00355 1.20659 0.97537 0.99229 0.93839 1.18450 1.00551 0.89215 0.95774 1.41732 1.47336 1.16395 1.13170 0.72451 1.22437 0.99661 0.97003 0.85898 1.21933 1.07740 0.97251 0.99795 1.19367 1.00853 0.93963 0.95535 1.20748 0.96833 0.99977 0.94995 1.21193 0.97031 0.86067 0.94759 0.94161 0.98103 0.92609 0.86919 0.89664 0.88683 0.92377 0.93395 0.74689 0.83083 0.81491 0.82504 0.77297 0.85267 0.91097 0.89754 0.96543 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.66 11.08 21.65 0.24 -57.42 16 2 C -0.06 -3.39 5.01 84.86 0.43 -2.96 16 3 Si 0.97 46.01 29.58 68.60 2.03 48.04 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.26 -14.56 9.71 84.03 0.82 -13.75 16 8 H 0.07 3.93 7.88 -2.91 -0.02 3.91 16 9 N -0.61 -32.50 3.01 -703.03 -2.11 -34.61 16 10 C 0.21 10.64 5.23 85.42 0.45 11.09 16 11 C -0.17 -6.93 9.47 27.10 0.26 -6.68 16 12 C -0.12 -4.01 5.11 -15.14 -0.08 -4.09 16 13 C -0.08 -1.84 5.32 29.85 0.16 -1.68 16 14 C 0.13 3.50 5.66 86.38 0.49 3.98 16 15 N -0.71 -15.80 5.51 -466.44 -2.57 -18.37 16 16 C 0.55 15.62 7.76 86.65 0.67 16.30 16 17 O -0.58 -21.55 15.09 -4.05 -0.06 -21.61 16 18 C -0.13 -2.97 5.90 -19.95 -0.12 -3.08 16 19 C -0.10 -1.44 9.53 22.54 0.21 -1.22 16 20 C -0.11 -1.18 9.99 22.24 0.22 -0.96 16 21 C -0.09 -1.02 10.05 22.41 0.23 -0.79 16 22 C 0.07 1.12 7.27 38.98 0.28 1.40 16 23 N -0.58 -6.54 6.06 -187.62 -1.14 -7.68 16 24 H 0.43 1.38 8.96 -92.71 -0.83 0.55 16 25 C 0.08 1.10 11.82 83.11 0.98 2.08 16 26 C -0.24 -5.82 10.24 23.43 0.24 -5.58 16 27 C -0.09 -2.21 6.15 -20.01 -0.12 -2.33 16 28 C -0.09 -2.97 5.95 29.72 0.18 -2.80 16 29 C 0.13 5.84 6.59 86.32 0.57 6.41 16 30 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.06 3.20 6.41 -2.39 -0.02 3.18 16 33 H 0.11 3.92 7.73 -2.91 -0.02 3.90 16 34 H 0.08 1.78 7.78 -2.39 -0.02 1.76 16 35 H 0.09 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.06 1.67 8.11 -2.38 -0.02 1.65 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.41 6.01 6.51 -92.71 -0.60 5.41 16 39 H 0.15 1.31 6.40 -2.91 -0.02 1.30 16 40 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 42 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 43 H 0.13 3.71 7.16 -2.91 -0.02 3.69 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.08 2.41 8.10 -2.39 -0.02 2.39 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 Total: -1.00 -82.52 384.55 1.82 -80.70 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.43 Total: 15.60 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.86 Total: -4.66 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -5.58 Total: -118.07 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.06 Total: -21.61 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -82.52 1.82 -80.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161296376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.345 kcal (2) G-P(sol) polarization free energy of solvation -82.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds