Wall clock time and date at job start Tue Mar 31 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99754 * 2 1 4 4 H 1.48497 * 109.46704 * 274.45190 * 3 2 1 5 5 H 1.48496 * 109.46994 * 34.45291 * 3 2 1 6 6 H 1.48496 * 109.47070 * 154.45325 * 3 2 1 7 7 C 1.38816 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99823 * 164.49470 * 7 2 1 9 9 N 1.36927 * 120.00301 * 344.50115 * 7 2 1 10 10 C 1.47013 * 121.37514 * 335.97289 * 9 7 2 11 11 C 1.50319 * 109.16670 * 222.96985 * 10 9 7 12 12 C 1.29454 * 123.65308 * 349.27852 * 11 10 9 13 13 C 1.50697 * 117.69309 * 180.57644 * 12 11 10 14 14 C 1.53002 * 109.46992 * 95.00370 * 13 12 11 15 15 N 1.46499 * 109.47066 * 179.97438 * 14 13 12 16 16 C 1.34773 * 120.00172 * 179.97438 * 15 14 13 17 17 O 1.21589 * 119.99711 * 0.02562 * 16 15 14 18 18 C 1.47579 * 120.00389 * 179.97438 * 16 15 14 19 19 C 1.40242 * 119.83053 * 359.73060 * 18 16 15 20 20 C 1.36201 * 120.37878 * 179.74721 * 19 18 16 21 21 C 1.39909 * 119.95749 * 0.48963 * 20 19 18 22 22 C 1.46255 * 133.83926 * 179.78735 * 21 20 19 23 23 C 1.34451 * 107.03393 * 180.02562 * 22 21 20 24 24 N 1.36563 * 109.97922 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.07062 * 180.02562 * 24 23 22 26 26 C 1.37819 * 109.85449 * 0.02562 * 24 23 22 27 27 C 1.38692 * 133.36769 * 180.02562 * 26 24 23 28 28 C 1.49963 * 124.61116 * 0.34360 * 12 11 10 29 29 C 1.47338 * 121.37892 * 155.99443 * 9 7 2 30 30 H 0.97000 * 120.00990 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.51719 * 103.05987 * 10 9 7 32 32 H 1.08996 * 109.51867 * 342.88055 * 10 9 7 33 33 H 1.07998 * 118.17029 * 168.99906 * 11 10 9 34 34 H 1.09002 * 109.46647 * 214.99981 * 13 12 11 35 35 H 1.08996 * 109.47295 * 335.00008 * 13 12 11 36 36 H 1.08997 * 109.47007 * 299.99792 * 14 13 12 37 37 H 1.09004 * 109.47057 * 59.99675 * 14 13 12 38 38 H 0.97005 * 120.00008 * 0.02562 * 15 14 13 39 39 H 1.08005 * 119.80802 * 359.97438 * 19 18 16 40 40 H 1.07998 * 120.01688 * 180.29428 * 20 19 18 41 41 H 1.08006 * 126.48171 * 0.02562 * 22 21 20 42 42 H 1.08010 * 125.01064 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.16457 * 359.93230 * 27 26 24 44 44 H 1.09002 * 109.43565 * 221.05353 * 28 12 11 45 45 H 1.08996 * 109.13473 * 101.66676 * 28 12 11 46 46 H 1.08998 * 109.78220 * 237.79085 * 29 9 7 47 47 H 1.08996 * 109.77666 * 358.59740 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4034 2.1008 -1.3959 5 1 1.4977 2.6237 0.7920 6 1 3.5915 1.4150 0.6038 7 6 2.0103 -1.2022 0.0005 8 1 3.0608 -1.2192 -0.2495 9 7 1.3631 -2.3663 0.3179 10 6 0.1447 -2.3650 1.1407 11 6 0.2253 -3.4818 2.1436 12 6 1.1239 -4.4130 2.1097 13 6 1.0713 -5.4763 3.1763 14 6 0.2982 -6.6876 2.6511 15 7 0.2475 -7.7215 3.6878 16 6 -0.3875 -8.8858 3.4479 17 8 -0.9179 -9.0783 2.3709 18 6 -0.4381 -9.9276 4.4920 19 6 0.1807 -9.7045 5.7306 20 6 0.1365 -10.6562 6.7040 21 6 -0.5204 -11.8685 6.4665 22 6 -0.7467 -13.0717 7.2666 23 6 -1.4529 -13.9246 6.5040 24 7 -1.6973 -13.3656 5.2823 25 1 -2.1894 -13.7913 4.5629 26 6 -1.1404 -12.1062 5.2240 27 6 -1.0949 -11.1296 4.2402 28 6 2.2107 -4.5110 1.0810 29 6 1.8591 -3.6722 -0.1506 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7263 -2.5111 0.5019 32 1 0.0589 -1.4121 1.6628 33 1 -0.5047 -3.5063 2.9392 34 1 2.0853 -5.7782 3.4386 35 1 0.5701 -5.0804 4.0596 36 1 -0.7157 -6.3857 2.3888 37 1 0.7995 -7.0835 1.7678 38 1 0.6704 -7.5678 4.5472 39 1 0.6921 -8.7713 5.9150 40 1 0.6110 -10.4764 7.6574 41 1 -0.4102 -13.2427 8.2785 42 1 -1.7795 -14.9068 6.8125 43 1 -1.5663 -11.3005 3.2837 44 1 2.3363 -5.5522 0.7841 45 1 3.1436 -4.1466 1.5110 46 1 1.0848 -4.1746 -0.7303 47 1 2.7475 -3.5300 -0.7659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161328472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:43 Heat of formation + Delta-G solvation = 58.446629 kcal Electronic energy + Delta-G solvation = -27333.165253 eV Core-core repulsion = 23481.931917 eV Total energy + Delta-G solvation = -3851.233335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66029 -39.84494 -37.90682 -36.88205 -35.42822 -33.55612 -32.36090 -31.44511 -30.16522 -29.72264 -29.47039 -28.35446 -25.45971 -23.85957 -22.92440 -22.81592 -22.28426 -21.14557 -20.93279 -20.38672 -18.68352 -17.57774 -17.27870 -16.56012 -16.21466 -15.69358 -15.49888 -15.03242 -14.82578 -14.69822 -14.36369 -14.12653 -14.00101 -13.94251 -13.60938 -13.49159 -13.45160 -13.26702 -12.61483 -12.32198 -12.18266 -11.94137 -11.90506 -11.53248 -11.39963 -11.35828 -10.96565 -10.88558 -10.69453 -10.30794 -10.25425 -10.16966 -10.02228 -9.77876 -9.51063 -9.13409 -8.66189 -8.62308 -8.16399 -7.88402 -6.68817 -5.75507 -3.13926 0.44949 1.09973 2.17694 2.60208 2.83441 2.88782 3.23338 3.39922 3.46749 3.49223 3.66950 4.26750 4.41176 4.52598 4.54400 4.70041 4.87909 4.99960 5.13845 5.15128 5.16679 5.31019 5.34227 5.43305 5.50185 5.59859 5.62214 5.68600 5.83473 5.95731 6.05261 6.08406 6.11270 6.19404 6.19739 6.25673 6.30018 6.39701 6.44346 6.59665 6.67757 6.83018 6.94634 7.03810 7.27588 7.35653 7.41089 7.46002 7.78483 7.92250 8.12423 8.42601 9.24074 9.87140 10.45999 11.34917 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038799 B = 0.001620 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.492318 B =17279.470659 C =17477.462121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.146 4.146 12 C -0.142 4.142 13 C -0.092 4.092 14 C 0.124 3.876 15 N -0.724 5.724 16 C 0.557 3.443 17 O -0.540 6.540 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.079 4.079 21 C -0.088 4.088 22 C -0.211 4.211 23 C 0.060 3.940 24 N -0.592 5.592 25 H 0.418 0.582 26 C 0.080 3.920 27 C -0.059 4.059 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.173 0.827 43 H 0.135 0.865 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.023 0.977 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -27.645 16.393 32.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.166 4.166 12 C -0.143 4.143 13 C -0.130 4.130 14 C 0.001 3.999 15 N -0.375 5.375 16 C 0.345 3.655 17 O -0.418 6.418 18 C -0.121 4.121 19 C -0.134 4.134 20 C -0.097 4.097 21 C -0.093 4.093 22 C -0.236 4.236 23 C -0.067 4.067 24 N -0.194 5.194 25 H 0.255 0.745 26 C -0.026 4.026 27 C -0.081 4.081 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.234 0.766 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.166 0.834 42 H 0.190 0.810 43 H 0.153 0.847 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.041 0.959 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.253 -27.664 15.506 31.793 hybrid contribution 0.300 0.686 0.237 0.785 sum -1.953 -26.978 15.743 31.296 Atomic orbital electron populations 1.70016 1.05171 1.25401 1.54895 1.24984 0.95372 0.98246 1.01384 0.86253 0.79090 0.83738 0.77559 1.21528 1.21609 1.20518 1.19185 0.92200 0.84423 1.41600 0.91433 1.44127 1.29289 1.01121 1.57323 1.19705 0.88635 0.94754 0.89771 1.23118 0.96622 0.97403 0.99455 1.20219 0.99310 0.96650 0.98133 1.20913 1.00037 0.94106 0.97908 1.21471 1.01363 0.86660 0.90373 1.46003 1.56626 1.16348 1.18544 1.18141 0.78456 0.81906 0.87017 1.90792 1.45891 1.79738 1.25368 1.19534 1.02812 0.94789 0.94944 1.20737 1.00381 0.99672 0.92576 1.20177 0.98664 0.91591 0.99291 1.19408 1.00859 0.95444 0.93604 1.21752 1.07643 0.93560 1.00669 1.21921 1.00671 0.99264 0.84888 1.41798 1.49017 1.13685 1.14929 0.74483 1.18099 1.00686 0.87228 0.96611 1.20089 0.99195 0.90817 0.97972 1.20759 0.96651 0.99008 0.96614 1.20952 0.97328 0.87217 0.92875 0.93669 0.94445 0.89161 0.89059 0.91414 0.91489 0.91133 0.91124 0.76576 0.85510 0.85327 0.83353 0.81011 0.84737 0.92839 0.91974 0.95859 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.60 11.08 55.49 0.61 -25.98 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 3 Si 0.90 21.89 29.58 -169.99 -5.03 16.87 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.81 9.71 -15.06 -0.15 -6.96 16 8 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 9 N -0.60 -15.25 3.01 -173.67 -0.52 -15.77 16 10 C 0.20 4.79 5.23 -5.10 -0.03 4.76 16 11 C -0.15 -2.87 9.47 -35.78 -0.34 -3.20 16 12 C -0.14 -2.48 5.11 -100.99 -0.52 -2.99 16 13 C -0.09 -1.20 5.32 -27.88 -0.15 -1.35 16 14 C 0.12 1.65 5.66 -4.04 -0.02 1.63 16 15 N -0.72 -8.20 5.50 -61.33 -0.34 -8.53 16 16 C 0.56 7.39 7.76 -12.45 -0.10 7.29 16 17 O -0.54 -9.19 16.31 5.29 0.09 -9.11 16 18 C -0.12 -1.27 5.87 -104.95 -0.62 -1.89 16 19 C -0.11 -0.98 9.46 -39.56 -0.37 -1.35 16 20 C -0.08 -0.64 10.03 -39.69 -0.40 -1.04 16 21 C -0.09 -0.79 6.37 -105.05 -0.67 -1.46 16 22 C -0.21 -1.42 11.08 -37.70 -0.42 -1.83 16 23 C 0.06 0.31 11.81 -16.78 -0.20 0.11 16 24 N -0.59 -3.66 6.07 -10.68 -0.06 -3.73 16 25 H 0.42 1.46 8.96 -40.82 -0.37 1.09 16 26 C 0.08 0.74 7.26 -84.00 -0.61 0.13 16 27 C -0.06 -0.63 9.61 -39.03 -0.37 -1.00 16 28 C -0.09 -1.63 5.94 -28.19 -0.17 -1.80 16 29 C 0.14 3.06 6.58 -3.53 -0.02 3.04 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 33 H 0.09 1.58 7.73 -52.49 -0.41 1.18 16 34 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 38 H 0.40 3.32 6.46 -40.82 -0.26 3.06 16 39 H 0.13 0.78 6.36 -52.48 -0.33 0.45 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 42 H 0.17 0.24 8.06 -52.48 -0.42 -0.18 16 43 H 0.13 1.41 7.62 -52.49 -0.40 1.01 16 44 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -34.58 386.63 -11.35 -45.92 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.69 Total: 2.58 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -5.23 Total: -8.07 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.31 Total: -54.02 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.58 -11.35 -45.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161328472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.368 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds