Wall clock time and date at job start Tue Mar 31 2020 22:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99754 * 2 1 4 4 H 1.48497 * 109.46704 * 274.45190 * 3 2 1 5 5 H 1.48496 * 109.46994 * 34.45291 * 3 2 1 6 6 H 1.48496 * 109.47070 * 154.45325 * 3 2 1 7 7 C 1.38816 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99823 * 164.49470 * 7 2 1 9 9 N 1.36927 * 120.00301 * 344.50115 * 7 2 1 10 10 C 1.47013 * 121.37514 * 335.97289 * 9 7 2 11 11 C 1.50319 * 109.16670 * 222.96985 * 10 9 7 12 12 C 1.29454 * 123.65308 * 349.27852 * 11 10 9 13 13 C 1.50697 * 117.69309 * 180.57644 * 12 11 10 14 14 C 1.53002 * 109.46992 * 95.00370 * 13 12 11 15 15 N 1.46499 * 109.47066 * 179.97438 * 14 13 12 16 16 C 1.34773 * 120.00172 * 179.97438 * 15 14 13 17 17 O 1.21589 * 119.99711 * 0.02562 * 16 15 14 18 18 C 1.47579 * 120.00389 * 179.97438 * 16 15 14 19 19 C 1.40242 * 119.83053 * 359.73060 * 18 16 15 20 20 C 1.36201 * 120.37878 * 179.74721 * 19 18 16 21 21 C 1.39909 * 119.95749 * 0.48963 * 20 19 18 22 22 C 1.46255 * 133.83926 * 179.78735 * 21 20 19 23 23 C 1.34451 * 107.03393 * 180.02562 * 22 21 20 24 24 N 1.36563 * 109.97922 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.07062 * 180.02562 * 24 23 22 26 26 C 1.37819 * 109.85449 * 0.02562 * 24 23 22 27 27 C 1.38692 * 133.36769 * 180.02562 * 26 24 23 28 28 C 1.49963 * 124.61116 * 0.34360 * 12 11 10 29 29 C 1.47338 * 121.37892 * 155.99443 * 9 7 2 30 30 H 0.97000 * 120.00990 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.51719 * 103.05987 * 10 9 7 32 32 H 1.08996 * 109.51867 * 342.88055 * 10 9 7 33 33 H 1.07998 * 118.17029 * 168.99906 * 11 10 9 34 34 H 1.09002 * 109.46647 * 214.99981 * 13 12 11 35 35 H 1.08996 * 109.47295 * 335.00008 * 13 12 11 36 36 H 1.08997 * 109.47007 * 299.99792 * 14 13 12 37 37 H 1.09004 * 109.47057 * 59.99675 * 14 13 12 38 38 H 0.97005 * 120.00008 * 0.02562 * 15 14 13 39 39 H 1.08005 * 119.80802 * 359.97438 * 19 18 16 40 40 H 1.07998 * 120.01688 * 180.29428 * 20 19 18 41 41 H 1.08006 * 126.48171 * 0.02562 * 22 21 20 42 42 H 1.08010 * 125.01064 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.16457 * 359.93230 * 27 26 24 44 44 H 1.09002 * 109.43565 * 221.05353 * 28 12 11 45 45 H 1.08996 * 109.13473 * 101.66676 * 28 12 11 46 46 H 1.08998 * 109.78220 * 237.79085 * 29 9 7 47 47 H 1.08996 * 109.77666 * 358.59740 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4034 2.1008 -1.3959 5 1 1.4977 2.6237 0.7920 6 1 3.5915 1.4150 0.6038 7 6 2.0103 -1.2022 0.0005 8 1 3.0608 -1.2192 -0.2495 9 7 1.3631 -2.3663 0.3179 10 6 0.1447 -2.3650 1.1407 11 6 0.2253 -3.4818 2.1436 12 6 1.1239 -4.4130 2.1097 13 6 1.0713 -5.4763 3.1763 14 6 0.2982 -6.6876 2.6511 15 7 0.2475 -7.7215 3.6878 16 6 -0.3875 -8.8858 3.4479 17 8 -0.9179 -9.0783 2.3709 18 6 -0.4381 -9.9276 4.4920 19 6 0.1807 -9.7045 5.7306 20 6 0.1365 -10.6562 6.7040 21 6 -0.5204 -11.8685 6.4665 22 6 -0.7467 -13.0717 7.2666 23 6 -1.4529 -13.9246 6.5040 24 7 -1.6973 -13.3656 5.2823 25 1 -2.1894 -13.7913 4.5629 26 6 -1.1404 -12.1062 5.2240 27 6 -1.0949 -11.1296 4.2402 28 6 2.2107 -4.5110 1.0810 29 6 1.8591 -3.6722 -0.1506 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7263 -2.5111 0.5019 32 1 0.0589 -1.4121 1.6628 33 1 -0.5047 -3.5063 2.9392 34 1 2.0853 -5.7782 3.4386 35 1 0.5701 -5.0804 4.0596 36 1 -0.7157 -6.3857 2.3888 37 1 0.7995 -7.0835 1.7678 38 1 0.6704 -7.5678 4.5472 39 1 0.6921 -8.7713 5.9150 40 1 0.6110 -10.4764 7.6574 41 1 -0.4102 -13.2427 8.2785 42 1 -1.7795 -14.9068 6.8125 43 1 -1.5663 -11.3005 3.2837 44 1 2.3363 -5.5522 0.7841 45 1 3.1436 -4.1466 1.5110 46 1 1.0848 -4.1746 -0.7303 47 1 2.7475 -3.5300 -0.7659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161328472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:42 Heat of formation + Delta-G solvation = 37.106951 kcal Electronic energy + Delta-G solvation = -27334.090611 eV Core-core repulsion = 23481.931917 eV Total energy + Delta-G solvation = -3852.158693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22424 -40.81434 -39.47014 -37.58430 -36.76198 -35.13737 -33.20765 -32.93986 -31.53700 -30.94891 -30.17195 -29.53178 -27.12715 -25.05825 -24.35689 -23.57054 -23.55800 -22.46421 -21.61494 -21.33131 -19.48340 -19.32550 -17.97552 -17.66747 -17.16073 -17.03200 -16.87069 -16.53967 -15.84514 -15.57263 -15.45360 -15.35293 -15.13869 -14.98680 -14.87347 -14.73832 -14.29924 -14.25254 -13.91567 -13.84766 -13.38490 -13.20771 -12.90456 -12.78422 -12.74245 -12.58354 -12.56291 -12.34539 -12.16782 -12.02900 -11.88314 -11.66805 -11.28212 -11.03166 -10.77824 -10.67950 -10.17053 -9.47954 -9.28132 -8.74562 -8.70681 -7.87566 -5.29652 -0.25393 0.47547 1.42096 1.47015 1.48046 1.58532 1.60687 2.02636 2.04620 2.37371 2.51612 2.94743 3.29289 3.64395 3.69284 3.78384 3.97024 3.98715 4.08515 4.12343 4.19742 4.29973 4.30661 4.38354 4.55767 4.59717 4.68039 4.69528 4.74601 4.87626 4.92024 4.98481 5.00538 5.03201 5.09219 5.18562 5.24496 5.30657 5.38190 5.42711 5.48479 5.51057 5.61328 5.68902 5.77497 5.89056 6.09971 6.29366 6.34064 6.52358 6.64398 7.13582 7.18035 7.83736 8.38911 9.21178 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038799 B = 0.001620 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.492318 B =17279.470659 C =17477.462121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.972 3.028 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.614 5.614 10 C 0.206 3.794 11 C -0.174 4.174 12 C -0.120 4.120 13 C -0.078 4.078 14 C 0.132 3.868 15 N -0.708 5.708 16 C 0.556 3.444 17 O -0.588 6.588 18 C -0.138 4.138 19 C -0.113 4.113 20 C -0.082 4.082 21 C -0.102 4.102 22 C -0.232 4.232 23 C 0.076 3.924 24 N -0.588 5.588 25 H 0.429 0.571 26 C 0.059 3.941 27 C -0.072 4.072 28 C -0.087 4.087 29 C 0.135 3.865 30 H 0.249 0.751 31 H 0.001 0.999 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.416 0.584 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.214 0.786 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.016 0.984 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 -29.932 19.279 35.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.193 4.193 12 C -0.121 4.121 13 C -0.116 4.116 14 C 0.008 3.992 15 N -0.360 5.360 16 C 0.345 3.655 17 O -0.470 6.470 18 C -0.142 4.142 19 C -0.132 4.132 20 C -0.100 4.100 21 C -0.108 4.108 22 C -0.256 4.256 23 C -0.052 4.052 24 N -0.192 5.192 25 H 0.268 0.732 26 C -0.048 4.048 27 C -0.094 4.094 28 C -0.126 4.126 29 C 0.009 3.991 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.255 0.745 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.186 0.814 42 H 0.230 0.770 43 H 0.139 0.861 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.034 0.966 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.514 -29.979 18.419 35.189 hybrid contribution -0.235 1.211 -0.676 1.407 sum -0.750 -28.768 17.743 33.808 Atomic orbital electron populations 1.70198 1.06692 1.25777 1.56216 1.25803 0.96171 1.01532 1.01633 0.85193 0.78116 0.79378 0.77367 1.21308 1.21863 1.19286 1.19556 0.92599 0.85618 1.41059 0.91078 1.44416 1.29446 1.02048 1.57949 1.19355 0.87261 0.95283 0.89988 1.22824 0.99359 0.97221 0.99940 1.20570 0.97145 0.96289 0.98105 1.20810 1.01867 0.92221 0.96697 1.21220 1.00137 0.87134 0.90687 1.45782 1.56093 1.15295 1.18862 1.18550 0.77602 0.82527 0.86845 1.90761 1.48101 1.80724 1.27451 1.19441 1.04874 0.94425 0.95462 1.20954 0.99936 1.00848 0.91502 1.20516 0.98254 0.91118 1.00138 1.19896 1.00504 0.96541 0.93848 1.22104 1.08704 0.93021 1.01806 1.22638 0.98623 1.00265 0.83665 1.41946 1.48540 1.12817 1.15877 0.73210 1.18178 1.01755 0.88249 0.96651 1.20094 0.99636 0.91612 0.98017 1.20717 0.96924 0.99990 0.94954 1.21154 0.97049 0.86073 0.94790 0.94156 0.98101 0.92620 0.86875 0.88656 0.89626 0.93162 0.92143 0.74496 0.83060 0.82753 0.81387 0.76982 0.86053 0.89624 0.91209 0.96571 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.36 11.08 21.65 0.24 -57.12 16 2 C -0.06 -3.26 5.01 84.86 0.43 -2.84 16 3 Si 0.97 45.79 29.58 68.60 2.03 47.81 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.26 -14.65 9.71 84.04 0.82 -13.83 16 8 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 9 N -0.61 -32.26 3.01 -703.38 -2.12 -34.38 16 10 C 0.21 10.54 5.23 85.42 0.45 10.98 16 11 C -0.17 -6.82 9.47 27.11 0.26 -6.56 16 12 C -0.12 -3.97 5.11 -15.14 -0.08 -4.04 16 13 C -0.08 -1.79 5.32 29.85 0.16 -1.63 16 14 C 0.13 3.29 5.66 86.38 0.49 3.78 16 15 N -0.71 -14.79 5.50 -466.22 -2.57 -17.35 16 16 C 0.56 14.67 7.76 86.71 0.67 15.34 16 17 O -0.59 -20.78 16.31 -4.00 -0.07 -20.85 16 18 C -0.14 -2.97 5.87 -20.08 -0.12 -3.09 16 19 C -0.11 -1.72 9.46 22.28 0.21 -1.51 16 20 C -0.08 -1.15 10.03 22.20 0.22 -0.92 16 21 C -0.10 -1.65 6.37 -20.14 -0.13 -1.77 16 22 C -0.23 -2.47 11.08 23.49 0.26 -2.21 16 23 C 0.08 0.54 11.81 83.09 0.98 1.52 16 24 N -0.59 -6.31 6.07 -187.71 -1.14 -7.45 16 25 H 0.43 2.42 8.96 -92.71 -0.83 1.59 16 26 C 0.06 1.04 7.26 38.96 0.28 1.32 16 27 C -0.07 -1.56 9.61 22.63 0.22 -1.34 16 28 C -0.09 -2.94 5.94 29.65 0.18 -2.76 16 29 C 0.13 5.78 6.58 86.25 0.57 6.35 16 30 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.06 3.17 6.41 -2.39 -0.02 3.16 16 33 H 0.11 3.87 7.73 -2.91 -0.02 3.85 16 34 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 35 H 0.09 1.73 7.78 -2.39 -0.02 1.71 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.42 5.63 6.46 -92.70 -0.60 5.03 16 39 H 0.15 1.38 6.36 -2.91 -0.02 1.36 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.21 -0.36 8.06 -2.91 -0.02 -0.39 16 43 H 0.12 2.79 7.62 -2.91 -0.02 2.76 16 44 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 2.47 7.96 -2.39 -0.02 2.45 16 Total: -1.00 -79.57 386.63 1.82 -77.75 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -0.43 Total: 14.78 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.86 Total: -3.21 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.58 Total: -116.30 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.07 Total: -20.85 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -79.57 1.82 -77.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161328472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.860 kcal (2) G-P(sol) polarization free energy of solvation -79.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds