Wall clock time and date at job start Tue Mar 31 2020 22:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48507 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47404 * 300.00415 * 3 2 1 6 6 H 1.48493 * 109.47361 * 60.00385 * 3 2 1 7 7 C 1.37882 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99930 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.53147 * 60.10257 * 9 7 2 11 11 C 1.53119 * 109.50548 * 300.00900 * 9 7 2 12 12 C 1.53116 * 109.16114 * 182.40497 * 11 9 7 13 13 C 1.53035 * 109.28155 * 57.64769 * 12 11 9 14 14 N 1.46851 * 109.52481 * 300.82580 * 13 12 11 15 15 C 1.39005 * 111.00092 * 185.83779 * 14 13 12 16 16 C 1.39136 * 119.70582 * 56.04045 * 15 14 13 17 17 C 1.38300 * 119.09630 * 180.02562 * 16 15 14 18 18 C 1.38875 * 118.50617 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.33766 * 180.02562 * 18 17 16 20 20 N 1.46496 * 109.47144 * 269.98290 * 19 18 17 21 21 C 1.35770 * 119.61783 * 269.72448 * 20 19 18 22 22 C 1.35357 * 120.69496 * 179.72053 * 21 20 19 23 23 C 1.40196 * 119.95004 * 0.52606 * 22 21 20 24 24 C 1.36395 * 119.26462 * 359.75364 * 23 22 21 25 25 C 1.34658 * 119.63149 * 89.99652 * 20 19 18 26 26 O 1.22066 * 119.97998 * 0.02562 * 25 20 19 27 27 C 1.38025 * 119.32870 * 0.02562 * 18 17 16 28 28 N 1.31964 * 120.85841 * 0.02562 * 27 18 17 29 29 C 1.46847 * 111.19759 * 61.73885 * 14 13 12 30 30 H 0.97002 * 120.00493 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.52408 * 62.49702 * 11 9 7 32 32 H 1.08998 * 109.51885 * 302.30356 * 11 9 7 33 33 H 1.08999 * 109.50241 * 297.71023 * 12 11 9 34 34 H 1.08993 * 109.50310 * 177.59152 * 12 11 9 35 35 H 1.08996 * 109.46681 * 180.80661 * 13 12 11 36 36 H 1.09003 * 109.45958 * 60.84009 * 13 12 11 37 37 H 1.08004 * 120.45453 * 0.05035 * 16 15 14 38 38 H 1.08001 * 120.74469 * 180.02562 * 17 16 15 39 39 H 1.09009 * 109.46836 * 29.98017 * 19 18 17 40 40 H 1.08998 * 109.47357 * 149.97856 * 19 18 17 41 41 H 1.07996 * 119.65609 * 0.02562 * 21 20 19 42 42 H 1.08001 * 120.02120 * 180.27653 * 22 21 20 43 43 H 1.07994 * 120.36813 * 179.77068 * 23 22 21 44 44 H 1.08003 * 120.34970 * 180.02562 * 24 23 22 45 45 H 1.08006 * 119.57087 * 179.72418 * 27 18 17 46 46 H 1.08998 * 109.46449 * 58.27473 * 29 14 13 47 47 H 1.09002 * 109.46087 * 178.24699 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6251 -2.5586 -0.8909 11 6 0.3708 -2.5813 1.2496 12 6 -0.3448 -3.9348 1.2724 13 6 0.6953 -5.0569 1.2398 14 7 1.5113 -4.9347 0.0250 15 6 2.3794 -6.0128 -0.1025 16 6 1.8730 -7.3087 -0.1098 17 6 2.7482 -8.3720 -0.2368 18 6 4.1058 -8.1030 -0.3521 19 6 5.0959 -9.2303 -0.4932 20 7 5.5455 -9.6544 0.8350 21 6 6.6377 -9.0709 1.3917 22 6 7.0688 -9.4419 2.6200 23 6 6.3915 -10.4464 3.3256 24 6 5.2978 -11.0353 2.7622 25 6 4.8741 -10.6223 1.4875 26 8 3.8971 -11.1411 0.9715 27 6 4.5390 -6.7926 -0.3363 28 7 3.6811 -5.7975 -0.2128 29 6 2.2449 -3.6628 0.0039 30 1 -0.4851 0.8400 0.0004 31 1 -0.3672 -1.7794 1.2289 32 1 0.9922 -2.4829 2.1397 33 1 -0.9959 -4.0168 0.4020 34 1 -0.9399 -4.0165 2.1818 35 1 0.1886 -6.0219 1.2414 36 1 1.3373 -4.9825 2.1176 37 1 0.8109 -7.4819 -0.0180 38 1 2.3841 -9.3887 -0.2461 39 1 4.6208 -10.0697 -1.0012 40 1 5.9525 -8.8908 -1.0755 41 1 7.1652 -8.2991 0.8510 42 1 7.9363 -8.9674 3.0543 43 1 6.7318 -10.7503 4.3044 44 1 4.7626 -11.8106 3.2904 45 1 5.5943 -6.5790 -0.4212 46 1 2.8797 -3.5950 0.8873 47 1 2.8637 -3.6153 -0.8923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:25 Heat of formation + Delta-G solvation = 44.625188 kcal Electronic energy + Delta-G solvation = -28809.975760 eV Core-core repulsion = 24958.143082 eV Total energy + Delta-G solvation = -3851.832678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65167 -40.40878 -38.01387 -37.09540 -35.36119 -33.83510 -32.58529 -31.89928 -30.49545 -30.04217 -29.79168 -26.70572 -25.19789 -24.39650 -23.67111 -23.50657 -22.50113 -21.43807 -21.02545 -18.76352 -17.91129 -17.55186 -17.33756 -16.61990 -16.46743 -16.28448 -15.87081 -15.09043 -14.85033 -14.67407 -14.47502 -14.37999 -14.03572 -13.82516 -13.32739 -13.02510 -12.87650 -12.79738 -12.58668 -12.55826 -12.36207 -12.26407 -12.12166 -11.82879 -11.73935 -10.97944 -10.82593 -10.68077 -10.45398 -10.25074 -10.18890 -9.92671 -9.80654 -9.68729 -9.40740 -9.29813 -9.12329 -8.71297 -8.32379 -8.24085 -7.71315 -5.99754 -4.05405 0.54890 1.08566 1.40112 1.61840 2.48946 3.29399 3.37505 3.40022 3.41642 3.74882 4.06578 4.27163 4.29920 4.43230 4.55700 4.61377 4.63533 4.82357 4.95214 4.95942 5.06425 5.16002 5.28344 5.31858 5.39720 5.50643 5.60736 5.68251 5.76241 5.78513 5.88824 5.98780 6.02424 6.07751 6.22691 6.26874 6.38967 6.43542 6.55457 6.58932 6.73507 6.82917 6.91721 7.03235 7.25211 7.39391 7.68984 7.73922 7.81070 8.01755 8.09105 8.21570 8.44960 8.98359 9.59021 11.06664 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002451 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.444407 B =11419.221880 C =11998.810782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.050 3.950 10 H 0.034 0.966 11 C -0.114 4.114 12 C -0.119 4.119 13 C 0.069 3.931 14 N -0.476 5.476 15 C 0.338 3.662 16 C -0.199 4.199 17 C -0.024 4.024 18 C -0.222 4.222 19 C 0.146 3.854 20 N -0.490 5.490 21 C 0.138 3.862 22 C -0.238 4.238 23 C -0.016 4.016 24 C -0.248 4.248 25 C 0.513 3.487 26 O -0.552 6.552 27 C 0.147 3.853 28 N -0.518 5.518 29 C 0.080 3.920 30 H 0.259 0.741 31 H 0.095 0.905 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.037 0.963 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.473 -20.436 4.077 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.031 3.969 10 H 0.052 0.948 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.057 4.057 14 N -0.191 5.191 15 C 0.106 3.894 16 C -0.222 4.222 17 C -0.050 4.050 18 C -0.226 4.226 19 C 0.024 3.976 20 N -0.200 5.200 21 C 0.011 3.989 22 C -0.261 4.261 23 C -0.038 4.038 24 C -0.270 4.270 25 C 0.315 3.685 26 O -0.435 6.435 27 C -0.012 4.012 28 N -0.232 5.232 29 C -0.046 4.046 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.179 0.821 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.163 0.837 45 H 0.166 0.834 46 H 0.055 0.945 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.569 -19.690 3.329 23.079 hybrid contribution 0.698 0.168 0.614 0.945 sum 12.267 -19.522 3.943 23.391 Atomic orbital electron populations 1.69887 1.05861 1.26286 1.50790 1.24933 0.94839 0.99012 0.95090 0.86548 0.80185 0.83814 0.77527 1.19775 1.21044 1.21090 1.21133 0.92975 0.90343 1.50535 0.92564 1.18771 0.92651 0.90643 0.94831 0.94817 1.21714 1.00211 0.94584 0.98681 1.21739 0.96917 0.96133 1.00930 1.22218 0.95330 1.00022 0.88106 1.59089 1.21380 1.02839 1.35814 1.20244 0.87951 0.90873 0.90372 1.21615 1.01259 0.91704 1.07612 1.21399 0.92176 0.99524 0.91942 1.20588 0.95097 0.95273 1.11666 1.20681 0.97797 0.97010 0.82065 1.45736 1.24081 1.31977 1.18197 1.22012 0.87163 0.95028 0.94723 1.20663 1.05501 1.04179 0.95737 1.21443 0.92087 0.91592 0.98699 1.22137 1.01643 1.06612 0.96569 1.17154 0.84197 0.79893 0.87216 1.90939 1.26964 1.56570 1.69042 1.22371 0.98884 0.87335 0.92645 1.67806 1.02481 1.35767 1.17101 1.22288 0.95923 0.85429 1.00939 0.93077 0.88688 0.94823 0.91692 0.92623 0.91360 0.94316 0.84658 0.84465 0.87477 0.88202 0.82122 0.83806 0.84945 0.83654 0.83410 0.94473 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 11.35 55.43 0.63 -24.53 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.05 1.25 2.26 -91.70 -0.21 1.04 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.42 16 13 C 0.07 1.20 5.25 -3.83 -0.02 1.18 16 14 N -0.48 -9.21 4.68 -173.23 -0.81 -10.02 16 15 C 0.34 5.91 6.40 -155.02 -0.99 4.92 16 16 C -0.20 -2.96 9.18 -39.23 -0.36 -3.32 16 17 C -0.02 -0.32 9.85 -39.32 -0.39 -0.71 16 18 C -0.22 -2.57 5.48 -104.46 -0.57 -3.15 16 19 C 0.15 1.26 5.48 -5.20 -0.03 1.23 16 20 N -0.49 -4.53 2.57 -121.06 -0.31 -4.84 16 21 C 0.14 0.91 10.28 -16.84 -0.17 0.74 16 22 C -0.24 -1.45 10.01 -39.87 -0.40 -1.85 16 23 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 24 C -0.25 -2.38 9.99 -39.38 -0.39 -2.77 16 25 C 0.51 6.12 7.40 -15.45 -0.11 6.00 16 26 O -0.55 -8.38 16.20 4.86 0.08 -8.30 16 27 C 0.15 1.88 10.85 -17.57 -0.19 1.69 16 28 N -0.52 -8.80 8.69 -12.44 -0.11 -8.90 16 29 C 0.08 1.76 3.87 -3.84 -0.01 1.74 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.03 6.68 -51.93 -0.35 0.68 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.14 1.84 7.16 -52.48 -0.38 1.47 16 38 H 0.14 1.74 7.62 -52.49 -0.40 1.34 16 39 H 0.11 1.00 7.34 -51.92 -0.38 0.62 16 40 H 0.10 0.52 7.96 -51.93 -0.41 0.11 16 41 H 0.16 0.54 8.03 -52.49 -0.42 0.11 16 42 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 47 H 0.07 1.66 7.71 -51.93 -0.40 1.26 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -32.99 381.49 -11.56 -44.55 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.83 Total: 1.78 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -4.94 Total: -11.64 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.60 Total: -48.31 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.99 -11.56 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.174 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds