Wall clock time and date at job start Tue Mar 31 2020 22:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48507 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47404 * 300.00415 * 3 2 1 6 6 H 1.48493 * 109.47361 * 60.00385 * 3 2 1 7 7 C 1.37882 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99930 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.53147 * 60.10257 * 9 7 2 11 11 C 1.53119 * 109.50548 * 300.00900 * 9 7 2 12 12 C 1.53116 * 109.16114 * 182.40497 * 11 9 7 13 13 C 1.53035 * 109.28155 * 57.64769 * 12 11 9 14 14 N 1.46851 * 109.52481 * 300.82580 * 13 12 11 15 15 C 1.39005 * 111.00092 * 185.83779 * 14 13 12 16 16 C 1.39136 * 119.70582 * 56.04045 * 15 14 13 17 17 C 1.38300 * 119.09630 * 180.02562 * 16 15 14 18 18 C 1.38875 * 118.50617 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.33766 * 180.02562 * 18 17 16 20 20 N 1.46496 * 109.47144 * 269.98290 * 19 18 17 21 21 C 1.35770 * 119.61783 * 269.72448 * 20 19 18 22 22 C 1.35357 * 120.69496 * 179.72053 * 21 20 19 23 23 C 1.40196 * 119.95004 * 0.52606 * 22 21 20 24 24 C 1.36395 * 119.26462 * 359.75364 * 23 22 21 25 25 C 1.34658 * 119.63149 * 89.99652 * 20 19 18 26 26 O 1.22066 * 119.97998 * 0.02562 * 25 20 19 27 27 C 1.38025 * 119.32870 * 0.02562 * 18 17 16 28 28 N 1.31964 * 120.85841 * 0.02562 * 27 18 17 29 29 C 1.46847 * 111.19759 * 61.73885 * 14 13 12 30 30 H 0.97002 * 120.00493 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.52408 * 62.49702 * 11 9 7 32 32 H 1.08998 * 109.51885 * 302.30356 * 11 9 7 33 33 H 1.08999 * 109.50241 * 297.71023 * 12 11 9 34 34 H 1.08993 * 109.50310 * 177.59152 * 12 11 9 35 35 H 1.08996 * 109.46681 * 180.80661 * 13 12 11 36 36 H 1.09003 * 109.45958 * 60.84009 * 13 12 11 37 37 H 1.08004 * 120.45453 * 0.05035 * 16 15 14 38 38 H 1.08001 * 120.74469 * 180.02562 * 17 16 15 39 39 H 1.09009 * 109.46836 * 29.98017 * 19 18 17 40 40 H 1.08998 * 109.47357 * 149.97856 * 19 18 17 41 41 H 1.07996 * 119.65609 * 0.02562 * 21 20 19 42 42 H 1.08001 * 120.02120 * 180.27653 * 22 21 20 43 43 H 1.07994 * 120.36813 * 179.77068 * 23 22 21 44 44 H 1.08003 * 120.34970 * 180.02562 * 24 23 22 45 45 H 1.08006 * 119.57087 * 179.72418 * 27 18 17 46 46 H 1.08998 * 109.46449 * 58.27473 * 29 14 13 47 47 H 1.09002 * 109.46087 * 178.24699 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6251 -2.5586 -0.8909 11 6 0.3708 -2.5813 1.2496 12 6 -0.3448 -3.9348 1.2724 13 6 0.6953 -5.0569 1.2398 14 7 1.5113 -4.9347 0.0250 15 6 2.3794 -6.0128 -0.1025 16 6 1.8730 -7.3087 -0.1098 17 6 2.7482 -8.3720 -0.2368 18 6 4.1058 -8.1030 -0.3521 19 6 5.0959 -9.2303 -0.4932 20 7 5.5455 -9.6544 0.8350 21 6 6.6377 -9.0709 1.3917 22 6 7.0688 -9.4419 2.6200 23 6 6.3915 -10.4464 3.3256 24 6 5.2978 -11.0353 2.7622 25 6 4.8741 -10.6223 1.4875 26 8 3.8971 -11.1411 0.9715 27 6 4.5390 -6.7926 -0.3363 28 7 3.6811 -5.7975 -0.2128 29 6 2.2449 -3.6628 0.0039 30 1 -0.4851 0.8400 0.0004 31 1 -0.3672 -1.7794 1.2289 32 1 0.9922 -2.4829 2.1397 33 1 -0.9959 -4.0168 0.4020 34 1 -0.9399 -4.0165 2.1818 35 1 0.1886 -6.0219 1.2414 36 1 1.3373 -4.9825 2.1176 37 1 0.8109 -7.4819 -0.0180 38 1 2.3841 -9.3887 -0.2461 39 1 4.6208 -10.0697 -1.0012 40 1 5.9525 -8.8908 -1.0755 41 1 7.1652 -8.2991 0.8510 42 1 7.9363 -8.9674 3.0543 43 1 6.7318 -10.7503 4.3044 44 1 4.7626 -11.8106 3.2904 45 1 5.5943 -6.5790 -0.4212 46 1 2.8797 -3.5950 0.8873 47 1 2.8637 -3.6153 -0.8923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:24 Heat of formation + Delta-G solvation = 25.908778 kcal Electronic energy + Delta-G solvation = -28810.787364 eV Core-core repulsion = 24958.143082 eV Total energy + Delta-G solvation = -3852.644282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40365 -41.58834 -39.44964 -37.88257 -36.33340 -35.40168 -33.83864 -33.39924 -31.85389 -31.34031 -30.68106 -27.66970 -27.10562 -25.51070 -24.68299 -24.55593 -23.45868 -22.96264 -22.26155 -20.51562 -18.96514 -18.53764 -18.19920 -17.90374 -17.47161 -17.21432 -17.15651 -16.53145 -16.08093 -15.83627 -15.63562 -15.30992 -15.17142 -15.01382 -14.89264 -14.43086 -14.25565 -14.06289 -14.04695 -13.55571 -13.43722 -13.33009 -13.06272 -12.87972 -12.73171 -12.68697 -12.56697 -12.49011 -11.90970 -11.82344 -11.53652 -11.18251 -11.09182 -11.04668 -10.86970 -10.79547 -10.65384 -10.39382 -10.34660 -9.04205 -8.89957 -8.09950 -6.23744 -0.08083 0.05163 0.31204 0.98499 1.40351 1.41988 1.53759 1.78381 2.40219 2.56255 2.74043 2.88319 3.17407 3.47088 3.67541 3.72506 3.87939 3.94732 3.98144 4.01647 4.10371 4.13554 4.21409 4.33257 4.36674 4.44114 4.49770 4.57013 4.59012 4.63288 4.76484 4.80189 4.86413 4.94724 5.01128 5.09798 5.11983 5.21268 5.23898 5.29882 5.40612 5.44763 5.56313 5.61621 5.70392 5.74888 5.98430 6.11826 6.15843 6.26174 6.37218 6.86146 7.04921 7.05185 7.44032 8.95373 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002451 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.444407 B =11419.221880 C =11998.810782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.049 3.951 10 H -0.003 1.003 11 C -0.106 4.106 12 C -0.111 4.111 13 C 0.072 3.928 14 N -0.489 5.489 15 C 0.309 3.691 16 C -0.200 4.200 17 C -0.030 4.030 18 C -0.201 4.201 19 C 0.146 3.854 20 N -0.489 5.489 21 C 0.133 3.867 22 C -0.237 4.237 23 C 0.002 3.998 24 C -0.287 4.287 25 C 0.495 3.505 26 O -0.604 6.604 27 C 0.145 3.855 28 N -0.549 5.549 29 C 0.106 3.894 30 H 0.261 0.739 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.035 0.965 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.146 0.854 41 H 0.202 0.798 42 H 0.177 0.823 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.190 0.810 46 H 0.025 0.975 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.507 -21.126 4.833 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.030 3.970 10 H 0.015 0.985 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.053 4.053 14 N -0.205 5.205 15 C 0.078 3.922 16 C -0.223 4.223 17 C -0.056 4.056 18 C -0.205 4.205 19 C 0.025 3.975 20 N -0.198 5.198 21 C 0.007 3.993 22 C -0.259 4.259 23 C -0.020 4.020 24 C -0.308 4.308 25 C 0.300 3.700 26 O -0.492 6.492 27 C -0.014 4.014 28 N -0.263 5.263 29 C -0.021 4.021 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.054 0.946 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.115 0.885 40 H 0.163 0.837 41 H 0.219 0.781 42 H 0.194 0.806 43 H 0.179 0.821 44 H 0.158 0.842 45 H 0.206 0.794 46 H 0.043 0.957 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.646 -20.394 4.094 25.440 hybrid contribution -0.078 0.289 0.405 0.503 sum 14.568 -20.106 4.499 25.233 Atomic orbital electron populations 1.70022 1.07134 1.27131 1.51128 1.25709 0.95699 1.02314 0.94647 0.85541 0.79081 0.79582 0.77668 1.19176 1.20615 1.20402 1.21452 0.92935 0.91899 1.50956 0.93159 1.18679 0.92925 0.91358 0.93998 0.98518 1.21504 0.99258 0.96372 0.97317 1.21632 0.97100 0.94089 1.02008 1.22230 0.94776 1.00684 0.87585 1.59082 1.22121 1.02162 1.37117 1.20221 0.88339 0.90818 0.92825 1.21667 1.02013 0.91038 1.07535 1.21575 0.93106 0.99156 0.91783 1.20901 0.95031 0.96037 1.08523 1.20820 0.98748 0.95526 0.82396 1.45690 1.24508 1.31416 1.18182 1.22770 0.86079 0.95230 0.95270 1.21162 1.05954 1.03354 0.95465 1.21844 0.90282 0.90346 0.99504 1.22139 1.03742 1.08406 0.96549 1.17545 0.84056 0.80422 0.87975 1.90897 1.29316 1.58686 1.70294 1.22995 1.00073 0.86800 0.91554 1.67745 1.02782 1.37887 1.17887 1.21744 0.94683 0.86229 0.99424 0.92950 0.91663 0.95541 0.92373 0.89850 0.88356 0.94643 0.83891 0.84220 0.88452 0.83652 0.78127 0.80582 0.82148 0.84193 0.79352 0.95672 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.24 11.35 21.45 0.24 -53.00 16 2 C 0.02 0.85 5.30 84.66 0.45 1.30 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.53 -30.23 8.56 25.60 0.22 -30.01 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.05 2.58 2.26 -11.49 -0.03 2.55 16 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 11 C -0.11 -5.12 5.02 30.67 0.15 -4.96 16 12 C -0.11 -4.19 6.09 30.64 0.19 -4.01 16 13 C 0.07 2.51 5.25 86.32 0.45 2.97 16 14 N -0.49 -19.20 4.68 -701.99 -3.28 -22.48 16 15 C 0.31 10.73 6.40 133.06 0.85 11.58 16 16 C -0.20 -5.84 9.18 22.50 0.21 -5.63 16 17 C -0.03 -0.76 9.85 22.44 0.22 -0.54 16 18 C -0.20 -4.19 5.48 -19.76 -0.11 -4.30 16 19 C 0.15 2.08 5.48 85.63 0.47 2.55 16 20 N -0.49 -7.74 2.57 -655.06 -1.68 -9.42 16 21 C 0.13 1.15 10.28 83.42 0.86 2.01 16 22 C -0.24 -1.84 10.01 22.08 0.22 -1.62 16 23 C 0.00 0.02 10.10 22.32 0.23 0.25 16 24 C -0.29 -5.30 9.99 22.40 0.22 -5.08 16 25 C 0.50 11.52 7.40 84.82 0.63 12.15 16 26 O -0.60 -18.85 16.20 -5.53 -0.09 -18.94 16 27 C 0.14 3.29 10.85 84.62 0.92 4.21 16 28 N -0.55 -18.12 8.69 -193.26 -1.68 -19.80 16 29 C 0.11 4.83 3.87 86.32 0.33 5.17 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.06 3.52 6.15 -2.39 -0.01 3.51 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.10 2.82 6.68 -2.39 -0.02 2.81 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 37 H 0.14 3.81 7.16 -2.91 -0.02 3.79 16 38 H 0.14 3.53 7.62 -2.91 -0.02 3.50 16 39 H 0.10 1.67 7.34 -2.38 -0.02 1.65 16 40 H 0.15 0.77 7.96 -2.39 -0.02 0.75 16 41 H 0.20 0.05 8.03 -2.91 -0.02 0.02 16 42 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 43 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 44 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 46 H 0.02 1.18 8.11 -2.39 -0.02 1.16 16 47 H 0.06 2.66 7.71 -2.39 -0.02 2.64 16 Total: -1.00 -77.48 381.49 2.98 -74.50 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.97 Total: 14.54 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 6.48 Total: -11.42 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -6.40 Total: -104.70 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.09 Total: -18.94 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.48 2.98 -74.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.408 kcal (2) G-P(sol) polarization free energy of solvation -77.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds