Wall clock time and date at job start Tue Mar 31 2020 22:39:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30834 * 1
3 3 Si 1.86798 * 120.00061 * 2 1
4 4 H 1.48498 * 109.47217 * 240.00008 * 3 2 1
5 5 H 1.48501 * 109.47042 * 0.02562 * 3 2 1
6 6 H 1.48508 * 109.46812 * 119.99767 * 3 2 1
7 7 C 1.39930 * 119.99749 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99958 * 189.15662 * 7 2 1
9 9 C 1.41424 * 120.00088 * 9.15712 * 7 2 1
10 10 C 1.40797 * 120.62041 * 209.19325 * 9 7 2
11 11 N 1.31470 * 120.56194 * 179.97438 * 10 9 7
12 12 C 1.32020 * 122.05853 * 359.70662 * 11 10 9
13 13 C 1.39292 * 121.20561 * 0.58045 * 12 11 10
14 14 N 1.39720 * 120.36215 * 179.70152 * 13 12 11
15 15 C 1.46500 * 120.00110 * 183.96827 * 14 13 12
16 16 C 1.50706 * 109.47209 * 86.40747 * 15 14 13
17 17 C 1.38225 * 120.00240 * 94.48351 * 16 15 14
18 18 C 1.38237 * 120.00102 * 180.27836 * 17 16 15
19 19 C 1.38236 * 119.99905 * 359.48837 * 18 17 16
20 20 C 1.38228 * 119.99806 * 0.51624 * 19 18 17
21 21 C 1.38234 * 119.99645 * 274.50723 * 16 15 14
22 22 C 1.46499 * 120.00151 * 3.96467 * 14 13 12
23 23 C 1.53004 * 112.99526 * 64.55432 * 22 14 13
24 24 N 1.46900 * 109.47380 * 65.75781 * 23 22 14
25 25 C 1.54035 * 113.81967 * 292.73114 * 22 14 13
26 26 O 1.44570 * 85.38167 * 268.28784 * 25 22 14
27 27 C 1.44179 * 93.32858 * 335.80233 * 26 25 22
28 28 C 1.38695 * 119.27824 * 359.43582 * 13 12 11
29 29 H 0.97002 * 119.99782 * 359.97438 * 1 2 3
30 30 H 1.07994 * 119.72214 * 359.97438 * 10 9 7
31 31 H 1.07999 * 119.39572 * 180.28811 * 12 11 10
32 32 H 1.08997 * 109.47015 * 326.40644 * 15 14 13
33 33 H 1.08996 * 109.47441 * 206.40532 * 15 14 13
34 34 H 1.08008 * 119.99837 * 0.02562 * 17 16 15
35 35 H 1.08006 * 119.99800 * 179.72495 * 18 17 16
36 36 H 1.08002 * 119.99920 * 180.23466 * 19 18 17
37 37 H 1.08005 * 120.00125 * 179.72594 * 20 19 18
38 38 H 1.07998 * 120.00194 * 0.02562 * 21 16 15
39 39 H 1.08999 * 109.47216 * 185.76227 * 23 22 14
40 40 H 1.09006 * 109.46957 * 305.76002 * 23 22 14
41 41 H 1.00898 * 110.99484 * 56.04202 * 24 23 22
42 42 H 1.00893 * 111.00057 * 179.97438 * 24 23 22
43 43 H 1.09002 * 113.86485 * 22.49249 * 25 22 14
44 44 H 1.08997 * 113.86417 * 154.20231 * 25 22 14
45 45 H 1.09001 * 113.86452 * 270.04440 * 27 26 25
46 46 H 1.08997 * 113.98456 * 138.34927 * 27 26 25
47 47 H 1.07998 * 120.93262 * 180.29158 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2424 1.6177 0.0000
4 1 3.0961 1.6964 -1.2125
5 1 1.2773 2.7464 0.0006
6 1 3.0961 1.6963 1.2126
7 6 2.0079 -1.2119 -0.0005
8 1 3.0776 -1.2179 0.1483
9 6 1.3143 -2.4287 -0.1960
10 6 1.7913 -3.6254 0.3723
11 7 1.1453 -4.7558 0.1902
12 6 0.0330 -4.8212 -0.5180
13 6 -0.5064 -3.6872 -1.1207
14 7 -1.6812 -3.7776 -1.8716
15 6 -2.1944 -2.5987 -2.5737
16 6 -1.5430 -2.4980 -3.9290
17 6 -2.1688 -3.0351 -5.0382
18 6 -1.5686 -2.9478 -6.2804
19 6 -0.3474 -2.3140 -6.4150
20 6 0.2784 -1.7770 -5.3057
21 6 -0.3194 -1.8689 -4.0626
22 6 -2.3998 -5.0514 -1.9568
23 6 -2.9576 -5.5144 -0.6094
24 7 -3.9956 -4.5767 -0.1608
25 6 -1.6349 -6.1471 -2.7230
26 8 -2.3410 -5.6620 -3.8876
27 6 -3.4221 -5.1131 -3.1074
28 6 0.1323 -2.4662 -0.9628
29 1 -0.4850 0.8401 0.0004
30 1 2.6955 -3.6146 0.9627
31 1 -0.4652 -5.7721 -0.6360
32 1 -1.9680 -1.7036 -1.9943
33 1 -3.2738 -2.6894 -2.6953
34 1 -3.1249 -3.5266 -4.9338
35 1 -2.0555 -3.3714 -7.1464
36 1 0.1197 -2.2425 -7.3861
37 1 1.2346 -1.2857 -5.4101
38 1 0.1699 -1.4499 -3.1958
39 1 -3.3889 -6.5095 -0.7173
40 1 -2.1532 -5.5447 0.1257
41 1 -4.7216 -4.4818 -0.8551
42 1 -4.3803 -4.8611 0.7276
43 1 -0.5572 -5.9884 -2.7605
44 1 -1.9085 -7.1613 -2.4321
45 1 -4.2399 -5.8125 -2.9337
46 1 -3.7622 -4.1352 -3.4480
47 1 -0.2651 -1.5693 -1.4144
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001167374645.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:39:30
Heat of formation + Delta-G solvation = 71.521014 kcal
Electronic energy + Delta-G solvation = -31066.030715 eV
Core-core repulsion = 27215.364327 eV
Total energy + Delta-G solvation = -3850.666387 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.97215 -38.76152 -38.15241 -35.50559 -34.14591 -33.92424 -31.47143 -30.57867
-30.21219 -29.28398 -28.14585 -26.51133 -25.48083 -24.90808 -23.90789 -22.32232
-21.58571 -21.23412 -20.60444 -18.73822 -17.26571 -16.98183 -16.49961 -16.10973
-15.98513 -15.33108 -15.25292 -14.87896 -14.74219 -14.56681 -14.40899 -14.28995
-14.03126 -13.23397 -13.09453 -12.98477 -12.97755 -12.62827 -12.41798 -12.19842
-12.05037 -11.74619 -11.47199 -11.28643 -11.17435 -11.03265 -10.91888 -10.79115
-10.55841 -10.38489 -10.13287 -9.99601 -9.66515 -9.34557 -9.06335 -8.53624
-8.46497 -8.38134 -8.02416 -7.63443 -6.74501 -6.29116 -4.46006 1.72827
1.85709 2.77140 3.05756 3.08595 3.11723 3.25518 3.57162 3.77552
3.91809 4.12617 4.34275 4.69794 4.84218 4.97156 5.08080 5.22096
5.23696 5.29227 5.37901 5.40786 5.47769 5.59148 5.64233 5.75345
5.86272 5.92372 5.99520 6.06609 6.08773 6.14009 6.22118 6.24510
6.41312 6.48722 6.56623 6.67647 6.84879 6.88940 6.97399 7.08457
7.12157 7.17045 7.20270 7.44266 7.49245 7.56559 7.73375 8.00323
8.11246 8.26688 8.66309 8.79367 8.86042 9.74490 10.18839
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.009925 B = 0.005459 C = 0.004195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2820.619071 B = 5127.721410 C = 6672.750990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.796 5.796
2 C 0.075 3.925
3 Si 0.908 3.092
4 H -0.264 1.264
5 H -0.279 1.279
6 H -0.265 1.265
7 C -0.453 4.453
8 H 0.079 0.921
9 C 0.095 3.905
10 C -0.047 4.047
11 N -0.448 5.448
12 C -0.094 4.094
13 C 0.184 3.816
14 N -0.585 5.585
15 C 0.171 3.829
16 C -0.099 4.099
17 C -0.095 4.095
18 C -0.130 4.130
19 C -0.126 4.126
20 C -0.127 4.127
21 C -0.095 4.095
22 C 0.141 3.859
23 C 0.046 3.954
24 N -0.833 5.833
25 C 0.022 3.978
26 O -0.362 6.362
27 C 0.021 3.979
28 C -0.196 4.196
29 H 0.280 0.720
30 H 0.122 0.878
31 H 0.114 0.886
32 H 0.092 0.908
33 H 0.069 0.931
34 H 0.114 0.886
35 H 0.112 0.888
36 H 0.112 0.888
37 H 0.116 0.884
38 H 0.134 0.866
39 H 0.028 0.972
40 H 0.093 0.907
41 H 0.330 0.670
42 H 0.340 0.660
43 H 0.101 0.899
44 H 0.081 0.919
45 H 0.079 0.921
46 H 0.100 0.900
47 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.152 -4.558 -7.616 12.749
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.422 5.422
2 C -0.142 4.142
3 Si 0.733 3.267
4 H -0.189 1.189
5 H -0.204 1.204
6 H -0.190 1.190
7 C -0.484 4.484
8 H 0.097 0.903
9 C 0.090 3.910
10 C -0.212 4.212
11 N -0.155 5.155
12 C -0.253 4.253
13 C 0.085 3.915
14 N -0.297 5.297
15 C 0.048 3.952
16 C -0.101 4.101
17 C -0.113 4.113
18 C -0.148 4.148
19 C -0.144 4.144
20 C -0.145 4.145
21 C -0.114 4.114
22 C 0.053 3.947
23 C -0.087 4.087
24 N -0.362 5.362
25 C -0.056 4.056
26 O -0.281 6.281
27 C -0.056 4.056
28 C -0.226 4.226
29 H 0.091 0.909
30 H 0.139 0.861
31 H 0.132 0.868
32 H 0.110 0.890
33 H 0.087 0.913
34 H 0.131 0.869
35 H 0.130 0.870
36 H 0.130 0.870
37 H 0.134 0.866
38 H 0.152 0.848
39 H 0.046 0.954
40 H 0.111 0.889
41 H 0.142 0.858
42 H 0.152 0.848
43 H 0.120 0.880
44 H 0.099 0.901
45 H 0.097 0.903
46 H 0.118 0.882
47 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -8.524 -4.641 -7.556 12.300
hybrid contribution -0.637 0.642 -0.224 0.932
sum -9.160 -3.998 -7.780 12.666
Atomic orbital electron populations
1.69783 1.07297 1.29075 1.36023 1.25869 0.94850 1.01068 0.92395
0.86357 0.80060 0.80313 0.79962 1.18891 1.20359 1.19012 1.19469
0.95573 0.90103 1.43247 0.90309 1.18298 0.91522 0.93300 0.87908
1.22385 1.02775 0.88967 1.07042 1.66853 1.06311 1.29620 1.12755
1.21311 0.98584 0.95466 1.09914 1.18581 0.85748 0.95510 0.91671
1.45543 1.24733 1.06214 1.53238 1.20140 0.96160 0.90081 0.88812
1.20478 0.95882 0.97883 0.95810 1.20974 0.99731 0.98281 0.92354
1.20957 0.96127 1.00501 0.97219 1.21032 0.95843 0.99315 0.98231
1.21131 0.99824 1.00574 0.92960 1.21463 0.94562 0.97507 0.97853
1.22774 0.91771 0.86702 0.93482 1.22371 0.96049 0.92119 0.98115
1.58444 1.16800 1.53786 1.07153 1.24612 0.99967 0.96728 0.84336
1.89801 1.34683 1.76479 1.27096 1.24404 0.91620 0.99748 0.89824
1.21287 1.00402 0.94802 1.06067 0.90917 0.86081 0.86835 0.88988
0.91305 0.86857 0.87033 0.87005 0.86596 0.84812 0.95380 0.88905
0.85786 0.84770 0.88046 0.90149 0.90274 0.88241 0.84648
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -19.54 10.83 55.55 0.60 -18.93 16
2 C 0.08 1.81 5.30 -17.34 -0.09 1.72 16
3 Si 0.91 18.19 29.57 -169.99 -5.03 13.16 16
4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16
5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16
6 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16
7 C -0.45 -11.53 9.09 -37.74 -0.34 -11.87 16
8 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16
9 C 0.09 2.45 5.56 -106.69 -0.59 1.86 16
10 C -0.05 -1.20 10.97 -16.74 -0.18 -1.38 16
11 N -0.45 -11.01 10.33 -12.37 -0.13 -11.13 16
12 C -0.09 -2.11 8.51 -17.08 -0.15 -2.25 16
13 C 0.18 4.04 6.26 -83.70 -0.52 3.52 16
14 N -0.59 -10.42 2.65 -165.42 -0.44 -10.86 16
15 C 0.17 2.91 4.86 -5.19 -0.03 2.89 16
16 C -0.10 -1.67 5.44 -104.63 -0.57 -2.24 16
17 C -0.09 -1.43 7.84 -39.59 -0.31 -1.74 16
18 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16
19 C -0.13 -1.84 10.05 -39.59 -0.40 -2.24 16
20 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16
21 C -0.10 -1.75 9.33 -39.58 -0.37 -2.12 16
22 C 0.14 2.06 0.57 -130.74 -0.07 1.99 16
23 C 0.05 0.62 5.89 -3.82 -0.02 0.60 16
24 N -0.83 -10.43 9.62 -10.37 -0.10 -10.53 16
25 C 0.02 0.33 7.22 37.64 0.27 0.60 16
26 O -0.36 -5.47 10.92 -35.23 -0.38 -5.86 16
27 C 0.02 0.26 6.52 37.64 0.25 0.51 16
28 C -0.20 -4.75 6.67 -38.39 -0.26 -5.01 16
29 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16
30 H 0.12 2.88 8.06 -52.49 -0.42 2.46 16
31 H 0.11 2.27 4.71 -52.49 -0.25 2.02 16
32 H 0.09 1.79 6.25 -51.93 -0.32 1.47 16
33 H 0.07 1.00 6.05 -51.93 -0.31 0.68 16
34 H 0.11 1.53 5.38 -52.48 -0.28 1.25 16
35 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16
36 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16
37 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16
38 H 0.13 2.76 5.47 -52.49 -0.29 2.47 16
39 H 0.03 0.32 8.07 -51.93 -0.42 -0.10 16
40 H 0.09 1.54 5.82 -51.93 -0.30 1.24 16
41 H 0.33 3.42 8.37 -39.29 -0.33 3.09 16
42 H 0.34 3.70 9.08 -39.30 -0.36 3.34 16
43 H 0.10 1.76 7.08 -51.93 -0.37 1.39 16
44 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16
45 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16
46 H 0.10 1.18 3.77 -51.93 -0.20 0.99 16
47 H 0.14 3.30 2.95 -52.49 -0.15 3.15 16
LS Contribution 362.93 15.07 5.47 5.47
Total: -1.00 -28.53 362.93 -9.85 -38.38
By element:
Atomic # 1 Polarization: 25.87 SS G_CDS: -5.66 Total: 20.21 kcal
Atomic # 6 Polarization: -15.73 SS G_CDS: -4.18 Total: -19.92 kcal
Atomic # 7 Polarization: -51.39 SS G_CDS: -0.06 Total: -51.45 kcal
Atomic # 8 Polarization: -5.47 SS G_CDS: -0.38 Total: -5.86 kcal
Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -28.53 -9.85 -38.38 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001167374645.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.899 kcal
(2) G-P(sol) polarization free energy of solvation -28.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.368 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.521 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds