Wall clock time and date at job start Tue Mar 31 2020 22:39:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30834 * 1
3 3 Si 1.86798 * 120.00061 * 2 1
4 4 H 1.48498 * 109.47217 * 240.00008 * 3 2 1
5 5 H 1.48501 * 109.47042 * 0.02562 * 3 2 1
6 6 H 1.48508 * 109.46812 * 119.99767 * 3 2 1
7 7 C 1.39930 * 119.99749 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99958 * 189.15662 * 7 2 1
9 9 C 1.41424 * 120.00088 * 9.15712 * 7 2 1
10 10 C 1.40797 * 120.62041 * 209.19325 * 9 7 2
11 11 N 1.31470 * 120.56194 * 179.97438 * 10 9 7
12 12 C 1.32020 * 122.05853 * 359.70662 * 11 10 9
13 13 C 1.39292 * 121.20561 * 0.58045 * 12 11 10
14 14 N 1.39720 * 120.36215 * 179.70152 * 13 12 11
15 15 C 1.46500 * 120.00110 * 183.96827 * 14 13 12
16 16 C 1.50706 * 109.47209 * 86.40747 * 15 14 13
17 17 C 1.38225 * 120.00240 * 94.48351 * 16 15 14
18 18 C 1.38237 * 120.00102 * 180.27836 * 17 16 15
19 19 C 1.38236 * 119.99905 * 359.48837 * 18 17 16
20 20 C 1.38228 * 119.99806 * 0.51624 * 19 18 17
21 21 C 1.38234 * 119.99645 * 274.50723 * 16 15 14
22 22 C 1.46499 * 120.00151 * 3.96467 * 14 13 12
23 23 C 1.53004 * 112.99526 * 64.55432 * 22 14 13
24 24 N 1.46900 * 109.47380 * 65.75781 * 23 22 14
25 25 C 1.54035 * 113.81967 * 292.73114 * 22 14 13
26 26 O 1.44570 * 85.38167 * 268.28784 * 25 22 14
27 27 C 1.44179 * 93.32858 * 335.80233 * 26 25 22
28 28 C 1.38695 * 119.27824 * 359.43582 * 13 12 11
29 29 H 0.97002 * 119.99782 * 359.97438 * 1 2 3
30 30 H 1.07994 * 119.72214 * 359.97438 * 10 9 7
31 31 H 1.07999 * 119.39572 * 180.28811 * 12 11 10
32 32 H 1.08997 * 109.47015 * 326.40644 * 15 14 13
33 33 H 1.08996 * 109.47441 * 206.40532 * 15 14 13
34 34 H 1.08008 * 119.99837 * 0.02562 * 17 16 15
35 35 H 1.08006 * 119.99800 * 179.72495 * 18 17 16
36 36 H 1.08002 * 119.99920 * 180.23466 * 19 18 17
37 37 H 1.08005 * 120.00125 * 179.72594 * 20 19 18
38 38 H 1.07998 * 120.00194 * 0.02562 * 21 16 15
39 39 H 1.08999 * 109.47216 * 185.76227 * 23 22 14
40 40 H 1.09006 * 109.46957 * 305.76002 * 23 22 14
41 41 H 1.00898 * 110.99484 * 56.04202 * 24 23 22
42 42 H 1.00893 * 111.00057 * 179.97438 * 24 23 22
43 43 H 1.09002 * 113.86485 * 22.49249 * 25 22 14
44 44 H 1.08997 * 113.86417 * 154.20231 * 25 22 14
45 45 H 1.09001 * 113.86452 * 270.04440 * 27 26 25
46 46 H 1.08997 * 113.98456 * 138.34927 * 27 26 25
47 47 H 1.07998 * 120.93262 * 180.29158 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2424 1.6177 0.0000
4 1 3.0961 1.6964 -1.2125
5 1 1.2773 2.7464 0.0006
6 1 3.0961 1.6963 1.2126
7 6 2.0079 -1.2119 -0.0005
8 1 3.0776 -1.2179 0.1483
9 6 1.3143 -2.4287 -0.1960
10 6 1.7913 -3.6254 0.3723
11 7 1.1453 -4.7558 0.1902
12 6 0.0330 -4.8212 -0.5180
13 6 -0.5064 -3.6872 -1.1207
14 7 -1.6812 -3.7776 -1.8716
15 6 -2.1944 -2.5987 -2.5737
16 6 -1.5430 -2.4980 -3.9290
17 6 -2.1688 -3.0351 -5.0382
18 6 -1.5686 -2.9478 -6.2804
19 6 -0.3474 -2.3140 -6.4150
20 6 0.2784 -1.7770 -5.3057
21 6 -0.3194 -1.8689 -4.0626
22 6 -2.3998 -5.0514 -1.9568
23 6 -2.9576 -5.5144 -0.6094
24 7 -3.9956 -4.5767 -0.1608
25 6 -1.6349 -6.1471 -2.7230
26 8 -2.3410 -5.6620 -3.8876
27 6 -3.4221 -5.1131 -3.1074
28 6 0.1323 -2.4662 -0.9628
29 1 -0.4850 0.8401 0.0004
30 1 2.6955 -3.6146 0.9627
31 1 -0.4652 -5.7721 -0.6360
32 1 -1.9680 -1.7036 -1.9943
33 1 -3.2738 -2.6894 -2.6953
34 1 -3.1249 -3.5266 -4.9338
35 1 -2.0555 -3.3714 -7.1464
36 1 0.1197 -2.2425 -7.3861
37 1 1.2346 -1.2857 -5.4101
38 1 0.1699 -1.4499 -3.1958
39 1 -3.3889 -6.5095 -0.7173
40 1 -2.1532 -5.5447 0.1257
41 1 -4.7216 -4.4818 -0.8551
42 1 -4.3803 -4.8611 0.7276
43 1 -0.5572 -5.9884 -2.7605
44 1 -1.9085 -7.1613 -2.4321
45 1 -4.2399 -5.8125 -2.9337
46 1 -3.7622 -4.1352 -3.4480
47 1 -0.2651 -1.5693 -1.4144
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001167374645.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:39:29
Heat of formation + Delta-G solvation = 52.749329 kcal
Electronic energy + Delta-G solvation = -31066.844716 eV
Core-core repulsion = 27215.364327 eV
Total energy + Delta-G solvation = -3851.480389 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.17911 -40.10541 -39.78350 -36.90099 -35.80714 -35.25642 -32.84292 -32.18117
-31.69140 -30.71947 -29.48662 -27.74078 -27.20762 -26.34317 -24.98439 -23.78036
-23.09793 -22.88189 -21.95543 -20.20763 -18.85572 -18.31801 -17.65236 -17.55141
-17.32386 -17.01200 -16.67668 -16.10456 -16.02596 -15.97345 -15.74072 -15.59217
-15.30932 -14.67073 -14.61824 -14.28654 -14.24643 -13.99699 -13.76432 -13.61756
-13.39624 -13.32006 -13.12645 -12.99200 -12.77509 -12.44012 -12.35414 -12.19890
-11.98498 -11.79713 -11.61458 -11.30839 -11.14336 -10.99584 -10.50116 -10.01082
-9.71210 -9.63055 -9.52048 -9.44025 -8.57273 -7.90676 -6.40411 0.48606
0.60365 0.98217 1.26969 1.39060 1.49291 1.54907 2.21661 2.24106
2.64886 2.83279 3.03829 3.10596 3.77245 3.82401 3.85004 3.97458
4.06459 4.17457 4.22076 4.25982 4.27243 4.30646 4.33680 4.48661
4.52487 4.67312 4.68800 4.70042 4.79777 4.83755 4.90202 4.97669
5.03497 5.08219 5.16646 5.20022 5.23387 5.27043 5.32450 5.64808
5.68768 5.75732 5.81253 5.93930 6.11516 6.21181 6.28969 6.37531
6.60369 6.68609 6.86746 6.89921 7.01659 7.83931 8.36880
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.009925 B = 0.005459 C = 0.004195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2820.619071 B = 5127.721410 C = 6672.750990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.820 5.820
2 C 0.040 3.960
3 Si 0.977 3.023
4 H -0.262 1.262
5 H -0.268 1.268
6 H -0.261 1.261
7 C -0.486 4.486
8 H 0.076 0.924
9 C 0.068 3.932
10 C -0.079 4.079
11 N -0.460 5.460
12 C -0.093 4.093
13 C 0.192 3.808
14 N -0.580 5.580
15 C 0.175 3.825
16 C -0.108 4.108
17 C -0.092 4.092
18 C -0.127 4.127
19 C -0.123 4.123
20 C -0.141 4.141
21 C -0.125 4.125
22 C 0.125 3.875
23 C 0.053 3.947
24 N -0.848 5.848
25 C 0.024 3.976
26 O -0.379 6.379
27 C 0.035 3.965
28 C -0.210 4.210
29 H 0.286 0.714
30 H 0.122 0.878
31 H 0.140 0.860
32 H 0.057 0.943
33 H 0.100 0.900
34 H 0.136 0.864
35 H 0.145 0.855
36 H 0.142 0.858
37 H 0.120 0.880
38 H 0.097 0.903
39 H 0.064 0.936
40 H 0.058 0.942
41 H 0.346 0.654
42 H 0.349 0.651
43 H 0.067 0.933
44 H 0.114 0.886
45 H 0.119 0.881
46 H 0.105 0.895
47 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.836 -5.561 -9.799 16.341
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.446 5.446
2 C -0.175 4.175
3 Si 0.799 3.201
4 H -0.186 1.186
5 H -0.192 1.192
6 H -0.186 1.186
7 C -0.517 4.517
8 H 0.094 0.906
9 C 0.063 3.937
10 C -0.242 4.242
11 N -0.167 5.167
12 C -0.253 4.253
13 C 0.090 3.910
14 N -0.290 5.290
15 C 0.052 3.948
16 C -0.109 4.109
17 C -0.111 4.111
18 C -0.145 4.145
19 C -0.141 4.141
20 C -0.159 4.159
21 C -0.143 4.143
22 C 0.038 3.962
23 C -0.080 4.080
24 N -0.380 5.380
25 C -0.055 4.055
26 O -0.298 6.298
27 C -0.041 4.041
28 C -0.241 4.241
29 H 0.096 0.904
30 H 0.140 0.860
31 H 0.157 0.843
32 H 0.075 0.925
33 H 0.118 0.882
34 H 0.154 0.846
35 H 0.163 0.837
36 H 0.160 0.840
37 H 0.138 0.862
38 H 0.115 0.885
39 H 0.082 0.918
40 H 0.076 0.924
41 H 0.159 0.841
42 H 0.163 0.837
43 H 0.086 0.914
44 H 0.132 0.868
45 H 0.137 0.863
46 H 0.123 0.877
47 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -11.238 -5.660 -9.747 15.916
hybrid contribution 0.066 0.851 0.366 0.929
sum -11.172 -4.809 -9.380 15.360
Atomic orbital electron populations
1.69847 1.08521 1.30175 1.36045 1.26624 0.95609 1.03897 0.91419
0.85316 0.78808 0.76084 0.79928 1.18627 1.19209 1.18583 1.19681
0.95686 0.91146 1.45163 0.90593 1.18626 0.92610 0.93829 0.88636
1.22430 1.03699 0.89397 1.08685 1.66836 1.07130 1.29400 1.13334
1.21755 0.97956 0.96675 1.08951 1.18602 0.86832 0.94438 0.91100
1.45659 1.23376 1.08002 1.51930 1.20115 0.97748 0.88524 0.88442
1.20432 0.95583 0.98573 0.96349 1.21193 1.00367 0.97601 0.91896
1.21391 0.95780 0.99362 0.97972 1.21371 0.95931 0.98076 0.98687
1.21288 1.00342 1.01256 0.93015 1.21324 0.95893 0.99514 0.97594
1.23144 0.92727 0.85007 0.95345 1.22210 0.95532 0.94058 0.96155
1.58363 1.17376 1.54001 1.08275 1.24613 0.98164 0.98350 0.84336
1.89781 1.35649 1.76829 1.27494 1.24589 0.91347 1.00996 0.87182
1.21299 1.00575 0.95719 1.06491 0.90364 0.85999 0.84255 0.92475
0.88242 0.84631 0.83716 0.84014 0.86194 0.88506 0.91833 0.92399
0.84073 0.83717 0.91412 0.86816 0.86298 0.87735 0.85248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -42.21 10.83 21.82 0.24 -41.97 16
2 C 0.04 1.98 5.30 85.25 0.45 2.43 16
3 Si 0.98 38.49 29.57 68.60 2.03 40.52 16
4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16
5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16
6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16
7 C -0.49 -26.38 9.09 23.46 0.21 -26.17 16
8 H 0.08 3.98 7.86 -2.91 -0.02 3.96 16
9 C 0.07 3.76 5.56 -21.21 -0.12 3.64 16
10 C -0.08 -4.28 10.97 85.37 0.94 -3.34 16
11 N -0.46 -23.55 10.33 -193.06 -1.99 -25.54 16
12 C -0.09 -4.29 8.51 84.92 0.72 -3.57 16
13 C 0.19 8.75 6.26 38.25 0.24 8.99 16
14 N -0.58 -20.53 2.65 -688.33 -1.82 -22.35 16
15 C 0.17 5.94 4.86 85.64 0.42 6.35 16
16 C -0.11 -3.62 5.44 -19.87 -0.11 -3.73 16
17 C -0.09 -2.55 7.84 22.27 0.17 -2.37 16
18 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16
19 C -0.12 -3.31 10.05 22.27 0.22 -3.08 16
20 C -0.14 -4.65 10.05 22.27 0.22 -4.43 16
21 C -0.12 -4.77 9.33 22.27 0.21 -4.56 16
22 C 0.13 3.36 0.57 4.30 0.00 3.36 16
23 C 0.05 1.29 5.89 86.30 0.51 1.80 16
24 N -0.85 -19.11 9.62 -186.71 -1.80 -20.91 16
25 C 0.02 0.65 7.22 72.30 0.52 1.17 16
26 O -0.38 -10.09 10.92 -148.98 -1.63 -11.72 16
27 C 0.04 0.71 6.52 72.30 0.47 1.18 16
28 C -0.21 -10.88 6.67 23.04 0.15 -10.73 16
29 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16
30 H 0.12 6.27 8.06 -2.91 -0.02 6.25 16
31 H 0.14 5.57 4.71 -2.91 -0.01 5.55 16
32 H 0.06 2.35 6.25 -2.39 -0.01 2.33 16
33 H 0.10 2.69 6.05 -2.39 -0.01 2.68 16
34 H 0.14 3.09 5.38 -2.91 -0.02 3.07 16
35 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16
36 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16
37 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16
38 H 0.10 4.39 5.47 -2.91 -0.02 4.38 16
39 H 0.06 1.13 8.07 -2.39 -0.02 1.11 16
40 H 0.06 1.85 5.82 -2.38 -0.01 1.84 16
41 H 0.35 5.89 8.37 -89.70 -0.75 5.14 16
42 H 0.35 6.80 9.08 -89.70 -0.81 5.99 16
43 H 0.07 2.31 7.08 -2.39 -0.02 2.29 16
44 H 0.11 2.31 8.05 -2.39 -0.02 2.29 16
45 H 0.12 1.55 8.10 -2.39 -0.02 1.53 16
46 H 0.10 2.00 3.77 -2.39 -0.01 1.99 16
47 H 0.13 6.81 2.95 -2.91 -0.01 6.81 16
Total: -1.00 -66.82 362.93 -0.02 -66.85
By element:
Atomic # 1 Polarization: 51.68 SS G_CDS: -0.51 Total: 51.17 kcal
Atomic # 6 Polarization: -41.51 SS G_CDS: 5.46 Total: -36.05 kcal
Atomic # 7 Polarization: -105.39 SS G_CDS: -5.38 Total: -110.77 kcal
Atomic # 8 Polarization: -10.09 SS G_CDS: -1.63 Total: -11.72 kcal
Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal
Total: -66.82 -0.02 -66.85 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001167374645.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.596 kcal
(2) G-P(sol) polarization free energy of solvation -66.824 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.847 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.749 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds