Wall clock time and date at job start Tue Mar 31 2020 22:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00184 * 2 1 4 4 H 1.48500 * 109.46949 * 270.00243 * 3 2 1 5 5 H 1.48507 * 109.47109 * 29.99790 * 3 2 1 6 6 H 1.48492 * 109.47450 * 149.99950 * 3 2 1 7 7 C 1.37874 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00082 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46905 * 175.27617 * 9 7 2 11 11 C 1.46899 * 110.99861 * 295.50549 * 10 9 7 12 12 C 1.53235 * 109.33876 * 187.25526 * 11 10 9 13 13 N 1.47071 * 108.52378 * 306.17578 * 12 11 10 14 14 C 1.34777 * 120.88080 * 231.18867 * 13 12 11 15 15 O 1.21691 * 120.00116 * 7.65158 * 14 13 12 16 16 C 1.46730 * 120.00080 * 187.65853 * 14 13 12 17 17 C 1.36663 * 126.02017 * 206.20834 * 16 14 13 18 18 C 1.40822 * 107.05725 * 179.97438 * 17 16 14 19 19 C 1.48447 * 126.29205 * 179.97438 * 18 17 16 20 20 C 1.39327 * 120.11450 * 359.72793 * 19 18 17 21 21 C 1.38024 * 119.87507 * 179.76975 * 20 19 18 22 22 C 1.38314 * 120.12060 * 0.50610 * 21 20 19 23 23 C 1.38325 * 120.24267 * 359.74157 * 22 21 20 24 24 C 1.38027 * 120.11590 * 0.02562 * 23 22 21 25 25 C 1.36601 * 107.42458 * 0.02562 * 18 17 16 26 26 N 1.34854 * 108.60055 * 359.97438 * 25 18 17 27 27 H 0.97001 * 125.51787 * 179.97438 * 26 25 18 28 28 C 1.47080 * 118.24176 * 51.45408 * 13 12 11 29 29 C 1.46893 * 111.00299 * 59.81493 * 10 9 7 30 30 H 0.97007 * 119.99789 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47061 * 55.27316 * 9 7 2 32 32 H 1.09005 * 109.46987 * 295.27387 * 9 7 2 33 33 H 1.08999 * 109.48765 * 67.30094 * 11 10 9 34 34 H 1.08996 * 109.52008 * 307.23415 * 11 10 9 35 35 H 1.08997 * 109.62862 * 186.46316 * 12 11 10 36 36 H 1.09003 * 109.62956 * 65.88680 * 12 11 10 37 37 H 1.08007 * 126.46964 * 359.97438 * 17 16 14 38 38 H 1.07994 * 120.06127 * 0.02562 * 20 19 18 39 39 H 1.07995 * 119.93979 * 180.27471 * 21 20 19 40 40 H 1.08001 * 119.88202 * 179.76884 * 22 21 20 41 41 H 1.07994 * 119.94249 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.05860 * 180.02562 * 24 23 22 43 43 H 1.07999 * 125.69704 * 179.73289 * 25 18 17 44 44 H 1.09005 * 109.62618 * 68.25174 * 28 13 12 45 45 H 1.08999 * 109.63383 * 188.83271 * 28 13 12 46 46 H 1.09005 * 109.48990 * 292.70120 * 29 10 9 47 47 H 1.08998 * 109.49570 * 52.78184 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2015 -3.6133 -0.1152 11 6 2.9016 -3.5773 -1.4061 12 6 3.7444 -4.8475 -1.5620 13 7 4.6165 -4.9769 -0.3849 14 6 5.9424 -5.1744 -0.5246 15 8 6.4545 -5.1092 -1.6266 16 6 6.7685 -5.4682 0.6519 17 6 8.1030 -5.2047 0.7830 18 6 8.4875 -5.6466 2.0636 19 6 9.8494 -5.5662 2.6487 20 6 10.8958 -5.0166 1.9110 21 6 12.1592 -4.9400 2.4616 22 6 12.3896 -5.4172 3.7392 23 6 11.3555 -5.9686 4.4740 24 6 10.0872 -6.0458 3.9349 25 6 7.3771 -6.1637 2.6683 26 7 6.3356 -6.0576 1.8183 27 1 5.4285 -6.3499 1.9992 28 6 4.0027 -4.8911 0.9489 29 6 3.1505 -3.6133 1.0060 30 1 -0.4850 0.8401 0.0004 31 1 0.5620 -2.5209 -0.8448 32 1 0.6897 -2.5946 0.9290 33 1 3.5513 -2.7029 -1.4431 34 1 2.1724 -3.5230 -2.2145 35 1 4.3536 -4.7744 -2.4628 36 1 3.0890 -5.7158 -1.6294 37 1 8.7422 -4.7446 0.0439 38 1 10.7178 -4.6474 0.9119 39 1 12.9700 -4.5101 1.8924 40 1 13.3805 -5.3588 4.1648 41 1 11.5410 -6.3401 5.4709 42 1 9.2804 -6.4760 4.5096 43 1 7.3405 -6.5902 3.6599 44 1 3.3715 -5.7635 1.1184 45 1 4.7827 -4.8468 1.7090 46 1 3.7968 -2.7383 0.9353 47 1 2.6016 -3.5854 1.9472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195648255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:03 Heat of formation + Delta-G solvation = 35.830043 kcal Electronic energy + Delta-G solvation = -28490.625933 eV Core-core repulsion = 24638.411869 eV Total energy + Delta-G solvation = -3852.214064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.69665 -40.78662 -39.58181 -38.97169 -36.17215 -34.43555 -33.65612 -32.25679 -31.86323 -31.09377 -30.15860 -29.17065 -27.25093 -24.96883 -24.69623 -23.83124 -23.61078 -22.70385 -21.40042 -20.97353 -20.56685 -19.10841 -18.31482 -17.66432 -17.33804 -16.78269 -16.74592 -16.61062 -16.07196 -15.86295 -15.58048 -15.51480 -15.24430 -15.06867 -14.76161 -14.66992 -14.37580 -14.14705 -13.81024 -13.70758 -13.66593 -13.53928 -13.32905 -13.01634 -12.96849 -12.61176 -12.52920 -12.27501 -12.05710 -11.99172 -11.86549 -11.73366 -11.70757 -11.21991 -10.71800 -10.65078 -9.96471 -9.74942 -9.59584 -9.12282 -8.67143 -8.21731 -6.40140 0.26422 0.44706 0.60630 1.31104 1.33174 1.42278 1.72958 1.81399 2.03881 2.31877 2.33754 3.04092 3.16270 3.24042 3.40735 3.85193 3.88297 4.00121 4.03125 4.14967 4.20132 4.24339 4.27574 4.37556 4.39079 4.41118 4.52091 4.64564 4.67741 4.70231 4.77065 4.83070 4.98104 5.03037 5.09421 5.15750 5.21492 5.26128 5.28476 5.35679 5.52602 5.60080 5.68985 5.72324 5.79500 5.91731 5.95490 6.11356 6.21437 6.28224 6.38333 6.43918 6.79442 6.94077 7.31409 8.80752 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.002504 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.646037 B =11178.825285 C =12121.733475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.047 0.953 9 C 0.200 3.800 10 N -0.531 5.531 11 C 0.054 3.946 12 C 0.126 3.874 13 N -0.608 5.608 14 C 0.584 3.416 15 O -0.576 6.576 16 C -0.064 4.064 17 C -0.110 4.110 18 C -0.166 4.166 19 C -0.014 4.014 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.139 4.139 23 C -0.120 4.120 24 C -0.126 4.126 25 C 0.069 3.931 26 N -0.520 5.520 27 H 0.436 0.564 28 C 0.106 3.894 29 C 0.049 3.951 30 H 0.266 0.734 31 H 0.011 0.989 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.221 0.779 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.014 0.986 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.651 -16.619 11.067 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.597 4.597 8 H 0.066 0.934 9 C 0.074 3.926 10 N -0.255 5.255 11 C -0.076 4.076 12 C 0.004 3.996 13 N -0.340 5.340 14 C 0.375 3.625 15 O -0.456 6.456 16 C -0.175 4.175 17 C -0.137 4.137 18 C -0.172 4.172 19 C -0.014 4.014 20 C -0.159 4.159 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.069 4.069 26 N -0.120 5.120 27 H 0.280 0.720 28 C -0.016 4.016 29 C -0.080 4.080 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.237 0.763 44 H 0.126 0.874 45 H 0.122 0.878 46 H 0.032 0.968 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.249 -16.953 10.474 27.021 hybrid contribution 0.107 2.271 -0.595 2.350 sum 18.357 -14.682 9.878 25.498 Atomic orbital electron populations 1.70032 1.07237 1.27901 1.50796 1.25702 0.95576 1.02452 0.94551 0.85688 0.78697 0.79807 0.78296 1.20281 1.20145 1.19775 1.21929 0.92967 0.93275 1.51536 0.93439 1.19448 0.91006 0.86159 0.96023 1.62447 1.16832 1.44508 1.01674 1.22220 0.96376 0.95765 0.93201 1.21740 0.91756 0.97999 0.88111 1.48188 1.06303 1.70643 1.08876 1.17510 0.81224 0.76306 0.87483 1.90784 1.72721 1.54626 1.27486 1.19634 0.94752 1.13762 0.89398 1.21125 0.92634 1.02158 0.97734 1.18336 0.93724 1.10139 0.95016 1.18319 0.90685 0.98091 0.94325 1.21314 0.93446 1.00973 1.00180 1.21305 0.96709 0.99907 0.96425 1.21476 1.00323 0.99297 0.94636 1.21415 0.92610 0.98954 1.00773 1.21400 0.98300 1.00486 0.94203 1.22620 0.85239 1.01728 0.97320 1.42302 1.12290 1.46161 1.11237 0.71996 1.22470 0.97029 0.99112 0.83036 1.22362 0.94206 0.95801 0.95645 0.92477 0.97049 0.96751 0.97091 0.90390 0.89700 0.88633 0.84918 0.86837 0.84951 0.84303 0.83610 0.83550 0.76276 0.87429 0.87804 0.96811 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.62 13.29 21.45 0.28 -53.34 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.56 -30.47 7.76 25.60 0.20 -30.27 16 8 H 0.05 2.64 5.88 -2.91 -0.02 2.62 16 9 C 0.20 10.04 5.11 85.56 0.44 10.47 16 10 N -0.53 -21.13 4.83 -898.90 -4.34 -25.47 16 11 C 0.05 2.05 5.24 86.38 0.45 2.51 16 12 C 0.13 3.92 6.61 86.35 0.57 4.49 16 13 N -0.61 -17.87 3.00 -821.71 -2.47 -20.34 16 14 C 0.58 18.72 7.62 86.46 0.66 19.38 16 15 O -0.58 -22.73 16.43 -4.32 -0.07 -22.80 16 16 C -0.06 -1.64 6.24 40.08 0.25 -1.39 16 17 C -0.11 -2.90 10.06 22.53 0.23 -2.68 16 18 C -0.17 -3.45 6.05 -20.31 -0.12 -3.57 16 19 C -0.01 -0.27 5.88 -20.03 -0.12 -0.39 16 20 C -0.14 -2.93 9.58 22.48 0.22 -2.72 16 21 C -0.13 -2.17 10.03 22.24 0.22 -1.94 16 22 C -0.14 -2.01 10.04 22.31 0.22 -1.79 16 23 C -0.12 -1.59 10.04 22.24 0.22 -1.36 16 24 C -0.13 -1.85 9.57 22.48 0.22 -1.64 16 25 C 0.07 0.97 11.30 83.85 0.95 1.92 16 26 N -0.52 -8.51 4.67 -184.08 -0.86 -9.37 16 27 H 0.44 4.68 6.68 -92.71 -0.62 4.06 16 28 C 0.11 2.54 5.38 86.50 0.47 3.01 16 29 C 0.05 1.69 5.18 86.54 0.45 2.13 16 30 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 31 H 0.01 0.62 8.07 -2.39 -0.02 0.60 16 32 H 0.01 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.01 0.48 7.08 -2.39 -0.02 0.47 16 34 H 0.08 2.97 8.06 -2.39 -0.02 2.95 16 35 H 0.08 2.76 7.04 -2.39 -0.02 2.74 16 36 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.13 3.73 7.39 -2.91 -0.02 3.71 16 38 H 0.11 2.42 7.08 -2.91 -0.02 2.40 16 39 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 40 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.15 1.24 7.01 -2.91 -0.02 1.22 16 43 H 0.22 0.97 7.26 -2.91 -0.02 0.95 16 44 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.10 2.01 4.65 -2.39 -0.01 2.00 16 46 H 0.01 0.56 6.64 -2.38 -0.02 0.54 16 47 H 0.09 2.86 8.11 -2.39 -0.02 2.84 16 Total: -1.00 -73.61 378.07 0.93 -72.67 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.38 Total: 14.87 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.98 Total: -2.40 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -7.38 Total: -108.51 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.07 Total: -22.80 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -73.61 0.93 -72.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195648255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.503 kcal (2) G-P(sol) polarization free energy of solvation -73.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds