Wall clock time and date at job start Tue Mar 31 2020 22:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00281 * 2 1 4 4 H 1.48498 * 109.47353 * 270.00397 * 3 2 1 5 5 H 1.48506 * 109.46794 * 30.00143 * 3 2 1 6 6 H 1.48497 * 109.47421 * 149.99955 * 3 2 1 7 7 C 1.38957 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00121 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00241 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99856 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00274 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46843 * 180.02562 * 12 10 9 14 14 C 1.46270 * 110.99370 * 190.00437 * 13 12 10 15 15 C 1.47543 * 114.36993 * 148.55984 * 14 13 12 16 16 C 1.54945 * 109.69350 * 62.23910 * 15 14 13 17 17 N 1.44695 * 109.51501 * 290.43766 * 16 15 14 18 18 C 1.34776 * 118.60125 * 269.15224 * 17 16 15 19 19 O 1.21281 * 120.00272 * 180.02562 * 18 17 16 20 20 C 1.50695 * 120.00030 * 0.02562 * 18 17 16 21 21 H 1.09006 * 110.49207 * 317.30014 * 20 18 17 22 22 C 1.54101 * 110.55348 * 80.00128 * 20 18 17 23 23 N 1.47042 * 103.86492 * 118.59257 * 22 20 18 24 24 C 1.33950 * 109.17937 * 0.02562 * 23 22 20 25 25 O 1.21596 * 123.04099 * 179.97438 * 24 23 22 26 26 N 1.33948 * 113.91417 * 359.97438 * 24 23 22 27 27 C 1.47783 * 122.85173 * 89.15317 * 17 16 15 28 28 C 1.44763 * 110.99970 * 66.51429 * 13 12 10 29 29 H 0.96998 * 119.99950 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00223 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46400 * 60.00585 * 12 10 9 32 32 H 1.08992 * 109.47409 * 300.00588 * 12 10 9 33 33 H 1.08990 * 108.50531 * 27.29190 * 14 13 12 34 34 H 1.09001 * 108.37657 * 269.72763 * 14 13 12 35 35 H 1.09002 * 109.42631 * 182.29532 * 15 14 13 36 36 H 1.09002 * 109.42877 * 302.18666 * 15 14 13 37 37 H 1.09001 * 109.46014 * 50.51052 * 16 15 14 38 38 H 1.09000 * 109.46474 * 170.47737 * 16 15 14 39 39 H 1.09003 * 110.55254 * 237.19650 * 22 20 18 40 40 H 1.09007 * 110.54333 * 359.85639 * 22 20 18 41 41 H 0.96997 * 125.41461 * 180.02562 * 23 22 20 42 42 H 0.97008 * 125.40604 * 179.97438 * 26 24 23 43 43 H 1.09006 * 109.05995 * 197.58000 * 27 17 16 44 44 H 1.08996 * 109.06789 * 78.64472 * 27 17 16 45 45 H 1.09005 * 109.43153 * 337.91568 * 28 13 12 46 46 H 1.08994 * 109.43503 * 97.83368 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9795 0.0005 14 6 1.5168 -7.2519 -0.2361 15 6 2.3289 -8.2533 -0.9534 16 6 3.5770 -8.6150 -0.1095 17 7 4.4811 -7.4858 -0.0752 18 6 5.4358 -7.3948 -1.0221 19 8 6.2075 -6.4592 -1.0172 20 6 5.5445 -8.4555 -2.0870 21 1 5.4230 -9.4473 -1.6514 22 6 4.4992 -8.2194 -3.1944 23 7 5.3087 -8.0072 -4.4035 24 6 6.6067 -8.0988 -4.0857 25 8 7.4997 -7.9646 -4.9001 26 7 6.8320 -8.3517 -2.7898 27 6 4.4033 -6.4275 0.9534 28 6 2.9449 -6.0232 1.2401 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 0.0002 31 1 0.6168 -4.9208 -0.8897 32 1 0.6173 -4.9205 0.8901 33 1 0.6146 -7.0583 -0.8162 34 1 1.2244 -7.6695 0.7273 35 1 1.7327 -9.1502 -1.1219 36 1 2.6461 -7.8435 -1.9123 37 1 3.2688 -8.8657 0.9056 38 1 4.0826 -9.4707 -0.5570 39 1 3.8602 -9.0948 -3.3104 40 1 3.8999 -7.3363 -2.9727 41 1 4.9584 -7.8292 -5.2903 42 1 7.7057 -8.4511 -2.3801 43 1 4.9536 -5.5528 0.6064 44 1 4.8593 -6.7915 1.8740 45 1 2.9268 -5.0394 1.7092 46 1 2.4919 -6.7533 1.9107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196962568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:54 Heat of formation + Delta-G solvation = -86.565614 kcal Electronic energy + Delta-G solvation = -31058.269130 eV Core-core repulsion = 26789.898329 eV Total energy + Delta-G solvation = -4268.370801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48184 -40.99321 -40.15591 -38.73641 -37.39012 -36.31827 -35.74187 -34.03460 -33.65255 -33.26480 -31.19537 -29.74401 -28.00155 -26.84593 -25.90641 -24.79982 -23.16506 -22.80669 -21.69414 -20.93439 -20.06110 -19.81366 -19.01879 -18.62723 -17.73595 -17.53404 -17.26337 -16.72834 -16.65654 -16.50625 -16.09328 -16.01527 -15.73995 -15.55600 -15.27409 -15.01791 -14.98343 -14.36405 -14.30861 -14.03005 -13.91580 -13.66440 -13.50752 -13.41332 -13.14483 -12.96120 -12.63054 -12.43497 -12.30758 -12.23078 -12.15353 -11.78796 -11.57427 -11.47983 -11.40351 -11.21683 -10.49932 -10.25400 -9.98694 -9.80339 -9.51509 -9.10243 -8.47512 -5.94912 1.34757 1.38441 1.50488 1.50660 1.65706 2.00057 2.09493 2.17618 2.27295 2.81491 3.03650 3.20151 3.31817 3.37701 3.48861 3.87493 4.00817 4.06524 4.13486 4.20085 4.31801 4.36373 4.44345 4.55388 4.58608 4.63380 4.66295 4.71944 4.77705 4.88650 4.90803 5.07804 5.12954 5.19840 5.40197 5.52983 5.67983 5.89616 5.94113 6.15757 6.19710 6.27583 6.42310 6.51845 6.62490 7.14818 7.23357 7.50850 7.59362 8.17048 8.69930 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.003123 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.261406 B = 8963.591839 C =10046.230587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.986 3.014 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.277 1.277 7 C -0.329 4.329 8 H 0.072 0.928 9 N -0.578 5.578 10 C 0.437 3.563 11 O -0.612 6.612 12 C 0.064 3.936 13 N -0.533 5.533 14 C 0.049 3.951 15 C -0.144 4.144 16 C 0.092 3.908 17 N -0.577 5.577 18 C 0.488 3.512 19 O -0.588 6.588 20 C 0.111 3.889 21 H 0.171 0.829 22 C 0.102 3.898 23 N -0.731 5.731 24 C 0.694 3.306 25 O -0.641 6.641 26 N -0.715 5.715 27 C 0.130 3.870 28 C 0.065 3.935 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.153 0.847 40 H 0.079 0.921 41 H 0.439 0.561 42 H 0.434 0.566 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 -26.987 0.782 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.210 4.210 3 Si 0.810 3.190 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.090 0.910 9 N -0.216 5.216 10 C 0.224 3.776 11 O -0.498 6.498 12 C -0.067 4.067 13 N -0.258 5.258 14 C -0.077 4.077 15 C -0.182 4.182 16 C -0.029 4.029 17 N -0.308 5.308 18 C 0.274 3.726 19 O -0.467 6.467 20 C 0.002 3.998 21 H 0.188 0.812 22 C -0.022 4.022 23 N -0.393 5.393 24 C 0.393 3.607 25 O -0.523 6.523 26 N -0.376 5.376 27 C 0.007 3.993 28 C -0.064 4.064 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.170 0.830 40 H 0.097 0.903 41 H 0.282 0.718 42 H 0.276 0.724 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.496 -26.222 0.066 26.265 hybrid contribution -0.240 1.913 0.632 2.029 sum -1.736 -24.309 0.698 24.381 Atomic orbital electron populations 1.69648 1.06578 1.29130 1.50715 1.25911 0.96502 1.02041 0.96552 0.85035 0.77908 0.77498 0.78544 1.19933 1.19192 1.20213 1.19557 0.92390 0.84281 1.49682 0.91022 1.41928 1.09208 1.04672 1.65776 1.21020 0.88441 0.86189 0.81915 1.90554 1.15784 1.87827 1.55597 1.21779 0.93372 0.88207 1.03374 1.60368 1.26316 1.03291 1.35796 1.21223 0.97031 0.88274 1.01209 1.21779 0.97236 0.99759 0.99416 1.22205 0.90455 0.87075 1.03211 1.47650 1.31279 1.24405 1.27417 1.21506 0.81089 0.87037 0.82925 1.90761 1.44843 1.35928 1.75218 1.22249 0.84573 1.00352 0.92663 0.81233 1.22815 0.92836 1.05463 0.81070 1.45082 1.04708 1.76785 1.12749 1.16202 0.84137 0.77181 0.83216 1.90944 1.47445 1.60866 1.53050 1.44886 1.09244 1.76273 1.07163 1.21669 0.96923 0.90334 0.90387 1.22125 0.93511 1.00400 0.90409 0.91354 0.77070 0.87347 0.91230 0.90584 0.92803 0.85274 0.91240 0.88534 0.86307 0.82954 0.90283 0.71770 0.72438 0.94050 0.90542 0.93503 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 8 H 0.07 4.51 7.16 -2.91 -0.02 4.49 16 9 N -0.58 -29.51 5.29 -306.98 -1.62 -31.13 16 10 C 0.44 20.36 7.15 87.66 0.63 20.99 16 11 O -0.61 -34.03 14.49 -3.07 -0.04 -34.07 16 12 C 0.06 1.97 5.25 85.56 0.45 2.42 16 13 N -0.53 -14.08 3.90 -916.53 -3.57 -17.65 16 14 C 0.05 0.69 4.97 84.72 0.42 1.11 16 15 C -0.14 -1.02 5.77 29.55 0.17 -0.85 16 16 C 0.09 0.70 5.17 87.38 0.45 1.15 16 17 N -0.58 -11.77 2.53 -817.11 -2.07 -13.84 16 18 C 0.49 12.47 6.76 87.66 0.59 13.06 16 19 O -0.59 -23.49 15.84 -3.03 -0.05 -23.53 16 20 C 0.11 1.67 3.27 44.51 0.15 1.82 16 21 H 0.17 0.66 6.39 -2.38 -0.02 0.64 16 22 C 0.10 1.27 5.88 86.65 0.51 1.78 16 23 N -0.73 -14.03 6.37 -477.34 -3.04 -17.07 16 24 C 0.69 19.28 8.92 179.57 1.60 20.88 16 25 O -0.64 -24.09 18.05 -4.02 -0.07 -24.17 16 26 N -0.72 -15.94 5.60 -460.35 -2.58 -18.52 16 27 C 0.13 3.72 6.46 86.48 0.56 4.28 16 28 C 0.06 1.76 4.62 87.05 0.40 2.16 16 29 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 31 H 0.11 2.93 7.75 -2.39 -0.02 2.91 16 32 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 33 H 0.08 0.96 7.44 -2.39 -0.02 0.94 16 34 H 0.05 0.58 7.17 -2.39 -0.02 0.56 16 35 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.07 0.69 4.66 -2.39 -0.01 0.68 16 37 H 0.10 0.49 8.09 -2.39 -0.02 0.47 16 38 H 0.12 -0.04 5.78 -2.39 -0.01 -0.05 16 39 H 0.15 0.19 8.11 -2.39 -0.02 0.17 16 40 H 0.08 1.35 6.08 -2.38 -0.01 1.33 16 41 H 0.44 6.99 8.96 -92.71 -0.83 6.16 16 42 H 0.43 9.30 8.96 -92.70 -0.83 8.47 16 43 H 0.04 1.73 6.96 -2.38 -0.02 1.71 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.68 6.25 -2.38 -0.01 1.66 16 46 H 0.07 1.35 7.13 -2.39 -0.02 1.33 16 Total: -1.00 -95.21 362.89 -4.85 -100.06 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -1.32 Total: 32.72 kcal Atomic # 6 Polarization: 43.26 SS G_CDS: 7.21 Total: 50.47 kcal Atomic # 7 Polarization: -135.15 SS G_CDS: -12.60 Total: -147.75 kcal Atomic # 8 Polarization: -81.61 SS G_CDS: -0.16 Total: -81.77 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -95.21 -4.85 -100.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196962568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.491 kcal (2) G-P(sol) polarization free energy of solvation -95.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds