Wall clock time and date at job start Tue Mar 31 2020 22:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00160 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00444 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99933 * 3 2 1 7 7 C 1.38941 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.49542 * 34.93732 * 14 13 12 16 16 C 1.53040 * 109.49829 * 274.83951 * 14 13 12 17 17 C 1.53034 * 109.53827 * 178.68364 * 16 14 13 18 18 C 1.53194 * 109.31321 * 61.36461 * 17 16 14 19 19 N 1.46927 * 108.77570 * 305.36439 * 18 17 16 20 20 C 1.34773 * 120.63011 * 233.58124 * 19 18 17 21 21 O 1.21286 * 119.99767 * 180.02562 * 20 19 18 22 22 C 1.50699 * 120.00188 * 0.03105 * 20 19 18 23 23 H 1.09002 * 110.48664 * 317.28949 * 22 20 19 24 24 C 1.54105 * 110.55039 * 79.99328 * 22 20 19 25 25 N 1.47060 * 103.85937 * 118.59801 * 24 22 20 26 26 C 1.33943 * 109.18149 * 359.97438 * 25 24 22 27 27 O 1.21584 * 123.04398 * 179.97438 * 26 25 24 28 28 N 1.33953 * 113.91539 * 0.02562 * 26 25 24 29 29 C 1.46929 * 118.73531 * 53.60853 * 19 18 17 30 30 H 0.96996 * 119.99520 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 35 35 H 1.09002 * 109.46158 * 298.70720 * 16 14 13 36 36 H 1.09001 * 109.46034 * 58.66262 * 16 14 13 37 37 H 1.09007 * 109.50074 * 301.41525 * 17 16 14 38 38 H 1.09004 * 109.50094 * 181.31420 * 17 16 14 39 39 H 1.08999 * 109.58548 * 185.57743 * 18 17 16 40 40 H 1.09004 * 109.58481 * 65.15117 * 18 17 16 41 41 H 1.09003 * 110.54777 * 237.18793 * 24 22 20 42 42 H 1.08992 * 110.54946 * 0.02562 * 24 22 20 43 43 H 0.96995 * 125.40412 * 180.02562 * 25 24 22 44 44 H 0.96995 * 125.40815 * 180.02562 * 28 26 25 45 45 H 1.08998 * 109.58341 * 186.60428 * 29 19 18 46 46 H 1.09004 * 109.70184 * 66.24772 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3703 -0.0021 13 7 6.0505 -3.7553 -0.0027 14 6 7.5190 -3.7945 -0.0034 15 1 7.9054 -2.9624 0.5851 16 6 8.0323 -3.6860 -1.4410 17 6 9.5626 -3.6937 -1.4401 18 6 10.0623 -5.0147 -0.8467 19 7 9.4572 -5.1961 0.4798 20 6 10.2281 -5.4315 1.5599 21 8 9.7164 -5.5800 2.6494 22 6 11.7260 -5.5102 1.4139 23 1 11.9931 -6.0827 0.5256 24 6 12.3383 -4.0974 1.3513 25 7 13.2237 -4.0449 2.5244 26 6 13.1584 -5.2125 3.1776 27 8 13.7933 -5.4430 4.1885 28 7 12.3310 -6.1036 2.6156 29 6 7.9955 -5.1166 0.6063 30 1 -0.4849 0.8401 0.0004 31 1 3.8649 -0.3632 -0.0014 32 1 5.9242 -1.8557 -0.8917 33 1 5.9242 -1.8573 0.8883 34 1 5.6751 -4.2720 0.7784 35 1 7.6653 -4.5318 -2.0225 36 1 7.6741 -2.7574 -1.8854 37 1 9.9303 -2.8624 -0.8383 38 1 9.9277 -3.5929 -2.4622 39 1 11.1478 -4.9853 -0.7522 40 1 9.7722 -5.8401 -1.4967 41 1 12.9117 -3.9692 0.4332 42 1 11.5591 -3.3390 1.4263 43 1 13.7678 -3.2852 2.7842 44 1 12.1580 -6.9979 2.9489 45 1 7.7173 -5.1546 1.6595 46 1 7.5349 -5.9504 0.0763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209315255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:54 Heat of formation + Delta-G solvation = -68.036879 kcal Electronic energy + Delta-G solvation = -29514.161057 eV Core-core repulsion = 25246.593722 eV Total energy + Delta-G solvation = -4267.567335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91130 -40.24238 -38.67239 -37.88696 -36.64177 -35.37567 -33.95916 -33.51035 -32.64566 -31.71345 -30.94176 -29.35051 -26.59955 -26.08632 -24.30745 -23.59717 -22.90137 -22.25297 -20.92274 -19.71418 -19.35861 -18.43716 -18.38759 -18.09867 -16.82253 -16.49592 -16.34522 -15.99675 -15.54470 -15.46842 -15.11055 -14.94220 -14.83941 -14.50084 -14.42616 -14.06967 -13.98600 -13.75814 -13.64164 -13.36980 -13.08036 -12.88488 -12.65694 -12.51731 -12.21731 -12.00365 -11.65809 -11.33634 -11.25095 -11.06167 -10.95279 -10.77869 -10.62626 -10.62023 -10.00578 -9.87796 -9.60683 -9.38682 -9.13868 -8.64737 -8.28747 -8.20680 -6.33898 -3.85567 1.92186 2.14332 2.42095 2.77609 2.99497 3.03737 3.12431 3.42164 3.62260 3.69391 3.76073 3.94339 4.07331 4.15926 4.34255 4.46351 4.53274 4.60333 4.66853 4.74894 4.82005 4.90886 5.02039 5.09216 5.17360 5.21780 5.33737 5.46918 5.50267 5.58559 5.66208 5.73134 5.84086 5.86718 5.94900 6.10221 6.50028 6.63842 6.81467 6.88443 6.99018 7.43865 7.54778 7.59753 8.11156 8.16129 8.56267 8.91802 9.39038 9.78634 10.79147 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002070 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.716714 B =13520.839824 C =13803.215782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.050 3.950 13 N -0.661 5.661 14 C 0.075 3.925 15 H 0.046 0.954 16 C -0.111 4.111 17 C -0.135 4.135 18 C 0.101 3.899 19 N -0.603 5.603 20 C 0.502 3.498 21 O -0.519 6.519 22 C 0.104 3.896 23 H 0.118 0.882 24 C 0.104 3.896 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.581 6.581 28 N -0.715 5.715 29 C 0.110 3.890 30 H 0.274 0.726 31 H 0.370 0.630 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.353 0.647 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.434 0.566 44 H 0.435 0.565 45 H 0.093 0.907 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.126 -6.248 -5.029 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.446 6.446 12 C -0.083 4.083 13 N -0.294 5.294 14 C -0.036 4.036 15 H 0.064 0.936 16 C -0.150 4.150 17 C -0.174 4.174 18 C -0.021 4.021 19 N -0.338 5.338 20 C 0.287 3.713 21 O -0.393 6.393 22 C -0.007 4.007 23 H 0.136 0.864 24 C -0.022 4.022 25 N -0.402 5.402 26 C 0.405 3.595 27 O -0.458 6.458 28 N -0.377 5.377 29 C -0.013 4.013 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.174 0.826 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.276 0.724 44 H 0.278 0.722 45 H 0.111 0.889 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 28.480 -7.125 -4.577 29.713 hybrid contribution 0.641 1.786 0.864 2.085 sum 29.121 -5.338 -3.714 29.838 Atomic orbital electron populations 1.69623 1.05636 1.27520 1.49241 1.25049 0.95510 0.97998 0.97645 0.86665 0.79746 0.84048 0.78873 1.19588 1.20165 1.19563 1.19429 0.79203 0.96649 1.48114 0.86252 1.42204 1.07563 1.06138 1.67030 1.19672 0.88114 0.84598 0.84132 1.90572 1.69394 1.30903 1.53708 1.21748 0.95133 0.90169 1.01255 1.60081 1.04820 1.13029 1.51490 1.21841 0.88815 0.96398 0.96546 0.93614 1.21568 0.93375 1.03625 0.96392 1.21955 0.96994 0.96808 1.01639 1.21925 0.97811 0.98920 0.83477 1.48064 1.07192 1.70746 1.07790 1.20756 0.88857 0.77382 0.84306 1.90786 1.74364 1.48464 1.25677 1.21875 0.91236 0.96076 0.91522 0.86417 1.22277 0.94226 0.94840 0.90831 1.45054 1.49511 1.16604 1.29061 1.15859 0.80138 0.81010 0.82533 1.91020 1.49983 1.79872 1.24963 1.44851 1.46585 1.17659 1.28617 1.21791 0.78440 0.97996 1.03078 0.91585 0.79711 0.89440 0.93709 0.82618 0.90580 0.91212 0.91452 0.89974 0.89897 0.90305 0.88458 0.89451 0.72418 0.72218 0.88884 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.52 13.96 55.50 0.77 -24.75 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.07 27.74 -169.99 -4.71 14.36 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.54 10.16 -14.94 -0.15 -8.69 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.77 5.09 -10.96 -0.06 -13.82 16 10 C 0.45 9.90 7.82 -10.98 -0.09 9.81 16 11 O -0.56 -14.81 15.78 5.55 0.09 -14.72 16 12 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 13 N -0.66 -9.25 5.93 -107.86 -0.64 -9.89 16 14 C 0.07 0.75 2.64 -67.59 -0.18 0.57 16 15 H 0.05 0.47 7.80 -51.93 -0.41 0.07 16 16 C -0.11 -0.87 5.40 -26.69 -0.14 -1.02 16 17 C -0.14 -0.57 6.08 -26.61 -0.16 -0.73 16 18 C 0.10 0.35 6.19 -3.71 -0.02 0.32 16 19 N -0.60 -4.17 2.97 -172.76 -0.51 -4.68 16 20 C 0.50 4.24 6.82 -10.99 -0.07 4.17 16 21 O -0.52 -6.93 15.97 5.55 0.09 -6.84 16 22 C 0.10 0.54 3.15 -68.20 -0.22 0.32 16 23 H 0.12 0.22 7.02 -51.93 -0.36 -0.15 16 24 C 0.10 0.38 6.95 -3.16 -0.02 0.36 16 25 N -0.74 -4.78 6.37 -64.70 -0.41 -5.19 16 26 C 0.71 7.35 8.92 -88.40 -0.79 6.56 16 27 O -0.58 -8.69 18.05 5.29 0.10 -8.60 16 28 N -0.71 -5.74 5.60 -59.33 -0.33 -6.08 16 29 C 0.11 1.02 5.70 -3.71 -0.02 1.00 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 32 H 0.09 1.19 7.43 -51.93 -0.39 0.80 16 33 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 34 H 0.35 5.30 8.06 -39.29 -0.32 4.99 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.61 7.44 -51.93 -0.39 0.22 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.08 0.05 5.26 -51.93 -0.27 -0.22 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.10 0.03 8.12 -51.93 -0.42 -0.39 16 42 H 0.09 0.34 7.72 -51.93 -0.40 -0.06 16 43 H 0.43 2.07 8.96 -40.82 -0.37 1.70 16 44 H 0.44 3.26 8.96 -40.82 -0.37 2.90 16 45 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -39.14 373.49 -8.36 -47.50 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.37 Total: 12.64 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -1.99 Total: 14.44 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -1.18 Total: -64.40 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: 0.27 Total: -30.16 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.14 -8.36 -47.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209315255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.538 kcal (2) G-P(sol) polarization free energy of solvation -39.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds