Wall clock time and date at job start Tue Mar 31 2020 22:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00160 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00444 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99933 * 3 2 1 7 7 C 1.38941 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.49542 * 34.93732 * 14 13 12 16 16 C 1.53040 * 109.49829 * 274.83951 * 14 13 12 17 17 C 1.53034 * 109.53827 * 178.68364 * 16 14 13 18 18 C 1.53194 * 109.31321 * 61.36461 * 17 16 14 19 19 N 1.46927 * 108.77570 * 305.36439 * 18 17 16 20 20 C 1.34773 * 120.63011 * 233.58124 * 19 18 17 21 21 O 1.21286 * 119.99767 * 180.02562 * 20 19 18 22 22 C 1.50699 * 120.00188 * 0.03105 * 20 19 18 23 23 H 1.09002 * 110.48664 * 317.28949 * 22 20 19 24 24 C 1.54105 * 110.55039 * 79.99328 * 22 20 19 25 25 N 1.47060 * 103.85937 * 118.59801 * 24 22 20 26 26 C 1.33943 * 109.18149 * 359.97438 * 25 24 22 27 27 O 1.21584 * 123.04398 * 179.97438 * 26 25 24 28 28 N 1.33953 * 113.91539 * 0.02562 * 26 25 24 29 29 C 1.46929 * 118.73531 * 53.60853 * 19 18 17 30 30 H 0.96996 * 119.99520 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 35 35 H 1.09002 * 109.46158 * 298.70720 * 16 14 13 36 36 H 1.09001 * 109.46034 * 58.66262 * 16 14 13 37 37 H 1.09007 * 109.50074 * 301.41525 * 17 16 14 38 38 H 1.09004 * 109.50094 * 181.31420 * 17 16 14 39 39 H 1.08999 * 109.58548 * 185.57743 * 18 17 16 40 40 H 1.09004 * 109.58481 * 65.15117 * 18 17 16 41 41 H 1.09003 * 110.54777 * 237.18793 * 24 22 20 42 42 H 1.08992 * 110.54946 * 0.02562 * 24 22 20 43 43 H 0.96995 * 125.40412 * 180.02562 * 25 24 22 44 44 H 0.96995 * 125.40815 * 180.02562 * 28 26 25 45 45 H 1.08998 * 109.58341 * 186.60428 * 29 19 18 46 46 H 1.09004 * 109.70184 * 66.24772 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3703 -0.0021 13 7 6.0505 -3.7553 -0.0027 14 6 7.5190 -3.7945 -0.0034 15 1 7.9054 -2.9624 0.5851 16 6 8.0323 -3.6860 -1.4410 17 6 9.5626 -3.6937 -1.4401 18 6 10.0623 -5.0147 -0.8467 19 7 9.4572 -5.1961 0.4798 20 6 10.2281 -5.4315 1.5599 21 8 9.7164 -5.5800 2.6494 22 6 11.7260 -5.5102 1.4139 23 1 11.9931 -6.0827 0.5256 24 6 12.3383 -4.0974 1.3513 25 7 13.2237 -4.0449 2.5244 26 6 13.1584 -5.2125 3.1776 27 8 13.7933 -5.4430 4.1885 28 7 12.3310 -6.1036 2.6156 29 6 7.9955 -5.1166 0.6063 30 1 -0.4849 0.8401 0.0004 31 1 3.8649 -0.3632 -0.0014 32 1 5.9242 -1.8557 -0.8917 33 1 5.9242 -1.8573 0.8883 34 1 5.6751 -4.2720 0.7784 35 1 7.6653 -4.5318 -2.0225 36 1 7.6741 -2.7574 -1.8854 37 1 9.9303 -2.8624 -0.8383 38 1 9.9277 -3.5929 -2.4622 39 1 11.1478 -4.9853 -0.7522 40 1 9.7722 -5.8401 -1.4967 41 1 12.9117 -3.9692 0.4332 42 1 11.5591 -3.3390 1.4263 43 1 13.7678 -3.2852 2.7842 44 1 12.1580 -6.9979 2.9489 45 1 7.7173 -5.1546 1.6595 46 1 7.5349 -5.9504 0.0763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209315255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:53 Heat of formation + Delta-G solvation = -105.645007 kcal Electronic energy + Delta-G solvation = -29515.791867 eV Core-core repulsion = 25246.593722 eV Total energy + Delta-G solvation = -4269.198146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.48615 -40.93081 -40.28479 -38.80851 -37.39609 -36.43443 -35.82292 -34.03650 -33.76924 -33.24459 -31.73719 -30.04006 -27.98773 -26.69649 -25.64847 -24.34312 -23.49528 -22.85606 -21.61299 -21.32404 -20.43341 -20.04381 -18.97945 -18.69389 -17.84029 -17.43708 -17.18953 -16.97103 -16.61267 -16.55900 -16.22278 -15.88867 -15.54484 -15.41006 -15.20474 -15.06371 -15.02052 -14.80207 -14.53103 -14.14879 -14.11621 -14.02172 -13.74658 -13.43579 -13.36883 -13.11371 -12.93418 -12.42723 -12.33267 -11.99428 -11.80039 -11.77348 -11.61345 -11.57554 -11.51704 -11.34077 -10.56469 -10.45820 -10.26159 -9.85895 -9.75224 -9.39103 -8.42113 -6.03423 1.29485 1.33620 1.35189 1.44182 1.55403 1.88565 1.93714 2.08393 2.22452 2.72541 3.00576 3.13709 3.23549 3.28926 3.37638 3.78146 3.90277 3.96090 4.06853 4.13922 4.17593 4.30119 4.31415 4.39365 4.51423 4.55337 4.60994 4.67973 4.73985 4.82510 4.87926 5.07009 5.14954 5.30116 5.38140 5.51474 5.54942 5.88016 5.89246 6.02394 6.17363 6.23547 6.29070 6.36323 6.58217 6.86730 7.00220 7.38090 7.49156 7.94574 8.75489 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002070 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.716714 B =13520.839824 C =13803.215782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.966 3.034 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.232 1.232 7 C -0.329 4.329 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.614 6.614 12 C 0.066 3.934 13 N -0.678 5.678 14 C 0.081 3.919 15 H 0.049 0.951 16 C -0.112 4.112 17 C -0.127 4.127 18 C 0.094 3.906 19 N -0.594 5.594 20 C 0.499 3.501 21 O -0.580 6.580 22 C 0.107 3.893 23 H 0.166 0.834 24 C 0.103 3.897 25 N -0.729 5.729 26 C 0.693 3.307 27 O -0.640 6.640 28 N -0.717 5.717 29 C 0.114 3.886 30 H 0.279 0.721 31 H 0.390 0.610 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.342 0.658 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.090 0.910 43 H 0.441 0.559 44 H 0.434 0.566 45 H 0.064 0.936 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.464 -3.928 -7.477 34.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.215 4.215 3 Si 0.786 3.214 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.155 1.155 7 C -0.458 4.458 8 H 0.073 0.927 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.499 6.499 12 C -0.067 4.067 13 N -0.310 5.310 14 C -0.029 4.029 15 H 0.067 0.933 16 C -0.150 4.150 17 C -0.166 4.166 18 C -0.027 4.027 19 N -0.327 5.327 20 C 0.285 3.715 21 O -0.458 6.458 22 C -0.002 4.002 23 H 0.183 0.817 24 C -0.022 4.022 25 N -0.392 5.392 26 C 0.392 3.608 27 O -0.522 6.522 28 N -0.377 5.377 29 C -0.010 4.010 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.168 0.832 42 H 0.108 0.892 43 H 0.284 0.716 44 H 0.276 0.724 45 H 0.082 0.918 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 32.850 -4.783 -7.120 33.952 hybrid contribution -0.828 0.917 1.576 2.002 sum 32.022 -3.867 -5.544 32.728 Atomic orbital electron populations 1.69811 1.08169 1.29273 1.50221 1.26153 0.96511 1.02827 0.96058 0.85345 0.79392 0.76583 0.80060 1.17827 1.20159 1.15529 1.18999 0.81515 0.94915 1.50404 0.92737 1.42028 1.05815 1.07618 1.67750 1.20983 0.91001 0.83305 0.81157 1.90551 1.71407 1.32804 1.55104 1.21649 0.89466 0.91740 1.03808 1.60151 1.07578 1.12063 1.51227 1.21918 0.86070 0.96530 0.98424 0.93311 1.21597 0.96382 1.02932 0.94070 1.21950 0.93738 0.97384 1.03512 1.22312 0.99976 0.99051 0.81339 1.48126 1.05868 1.69619 1.09116 1.21436 0.90346 0.76127 0.83544 1.90771 1.75672 1.51291 1.28112 1.22240 0.88360 0.97841 0.91793 0.81715 1.22678 0.94382 0.93553 0.91567 1.45057 1.49346 1.15413 1.29430 1.16214 0.80150 0.82229 0.82217 1.90965 1.52414 1.81172 1.27619 1.44919 1.45963 1.17385 1.29443 1.21532 0.80520 0.97751 1.01173 0.91135 0.77448 0.86356 0.91177 0.83938 0.91550 0.91712 0.90524 0.87353 0.85790 0.89307 0.83225 0.89196 0.71593 0.72442 0.91770 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.96 21.66 0.30 -55.92 16 2 C -0.02 -0.93 5.50 84.92 0.47 -0.47 16 3 Si 0.97 38.21 27.74 68.60 1.90 40.11 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.23 -7.67 6.52 99.48 0.65 -7.03 16 7 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 8 H 0.05 3.81 7.39 -2.91 -0.02 3.78 16 9 N -0.59 -27.48 5.09 -306.98 -1.56 -29.04 16 10 C 0.45 19.87 7.82 87.66 0.69 20.55 16 11 O -0.61 -33.84 15.78 -3.07 -0.05 -33.89 16 12 C 0.07 1.91 5.97 85.56 0.51 2.42 16 13 N -0.68 -18.53 5.93 -495.17 -2.94 -21.46 16 14 C 0.08 1.45 2.64 44.99 0.12 1.57 16 15 H 0.05 0.87 7.80 -2.39 -0.02 0.85 16 16 C -0.11 -1.38 5.40 30.62 0.17 -1.22 16 17 C -0.13 -0.39 6.08 30.67 0.19 -0.21 16 18 C 0.09 0.15 6.19 86.36 0.53 0.69 16 19 N -0.59 -6.57 2.97 -818.90 -2.43 -9.00 16 20 C 0.50 7.41 6.82 87.66 0.60 8.01 16 21 O -0.58 -15.67 15.97 -3.05 -0.05 -15.72 16 22 C 0.11 0.71 3.15 44.51 0.14 0.85 16 23 H 0.17 -0.41 7.02 -2.39 -0.02 -0.43 16 24 C 0.10 0.25 6.95 86.65 0.60 0.86 16 25 N -0.73 -7.53 6.37 -477.33 -3.04 -10.57 16 26 C 0.69 13.84 8.92 179.57 1.60 15.44 16 27 O -0.64 -19.64 18.05 -3.98 -0.07 -19.71 16 28 N -0.72 -10.53 5.60 -460.34 -2.58 -13.11 16 29 C 0.11 2.05 5.70 86.36 0.49 2.55 16 30 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.39 14.87 5.76 -92.71 -0.53 14.33 16 32 H 0.12 2.77 7.43 -2.39 -0.02 2.75 16 33 H 0.07 1.73 8.06 -2.39 -0.02 1.71 16 34 H 0.34 10.59 8.06 -89.69 -0.72 9.87 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.89 7.44 -2.39 -0.02 0.87 16 37 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16 38 H 0.11 -0.10 8.14 -2.38 -0.02 -0.12 16 39 H 0.12 -0.78 5.26 -2.39 -0.01 -0.79 16 40 H 0.09 0.07 8.14 -2.39 -0.02 0.06 16 41 H 0.15 -1.06 8.12 -2.39 -0.02 -1.08 16 42 H 0.09 0.27 7.72 -2.39 -0.02 0.25 16 43 H 0.44 3.18 8.96 -92.71 -0.83 2.35 16 44 H 0.43 6.40 8.96 -92.71 -0.83 5.57 16 45 H 0.06 1.54 7.01 -2.39 -0.02 1.53 16 46 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -97.49 373.49 -5.47 -102.96 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -1.90 Total: 32.67 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 6.96 Total: 32.68 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -12.25 Total: -139.11 kcal Atomic # 8 Polarization: -69.14 SS G_CDS: -0.17 Total: -69.31 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.90 Total: 40.11 kcal Total: -97.49 -5.47 -102.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209315255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.689 kcal (2) G-P(sol) polarization free energy of solvation -97.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds